Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XMJ	38479	2025-02-11	2023-12-27	4.18	4.63	4.20	4.4	0.004	0.66	0.0	0.05	24.61	0.00	1.932	8.98	0.00	5.2	94.8	0.0	2.35	0.56	0.76	—	4.5	0.003	0.58	0.0	0.04	13.16	0.00	1.966	8.72	0.00	5.4	94.5	0.2	2.04	0.98	0.63	0.81	—	4314	648	4	0	11	0	0	logfile
✔	8XMF	38475	2025-02-11	2023-12-27	3.64	4.12	3.77	4.0	0.005	0.69	0.0	0.04	19.98	0.00	1.982	9.07	0.00	5.3	94.7	0.0	1.35	0.59	0.80	2.19	4.1	0.003	0.65	0.0	0.04	16.42	0.00	1.864	8.87	5.63	4.5	95.5	0.0	1.32	0.54	0.59	0.81	1.93	4929	636	4	0	13	0	0	logfile
✔	8VGP	43220	2025-02-11	2023-12-27	2.7	3.48	2.69	3.2	0.010	1.02	0.0	0.06	14.34	0.02	2.148	2.04	0.91	5.0	94.8	0.2	-0.76	0.91	0.90	4.54	3.2	0.004	0.74	0.0	0.04	14.93	0.00	2.278	3.37	1.63	3.1	96.7	0.2	0.52	1.18	0.87	0.88	4.20	5046	648	6	0	1	43	0	logfile
✔	8XML	38481	2025-02-12	2023-12-27	2.58	3.37	2.66	3.2	0.005	0.84	0.0	0.05	9.18	0.01	2.236	4.22	0.00	3.9	96.0	0.1	-2.93	0.72	0.84	4.38	3.2	0.003	0.69	0.0	0.04	14.96	0.00	2.519	7.53	2.04	2.9	97.1	0.0	0.19	0.70	0.72	0.85	3.71	8245	1071	5	0	0	0	0	logfile
✔	8VGN	43212	2025-02-13	2023-12-27	2.5	3.15	2.50	2.9	0.006	0.83	0.0	0.05	14.29	0.01	2.290	3.35	0.78	5.1	94.5	0.3	-0.56	0.71	0.84	4.14	2.9	0.004	0.71	0.0	0.04	15.65	0.00	2.435	5.93	0.78	1.9	98.1	0.0	1.30	3.03	0.70	0.84	3.86	9150	1204	6	0	0	0	0	logfile
✔	8XM6	38465	2025-02-11	2023-12-27	3.48	3.62	3.58	3.7	0.004	0.68	0.0	0.04	23.94	0.00	2.004	8.27	0.00	4.1	95.9	0.0	2.70	0.57	0.77	1.78	3.7	0.003	0.58	0.0	0.04	15.79	0.00	2.100	8.08	3.28	2.7	97.3	0.0	2.70	0.47	0.56	0.80	1.88	5205	645	4	0	13	0	0	logfile
✔	8XLN	38454	2025-02-14	2023-12-26	3.78	3.92	3.75	3.8	0.004	0.65	0.0	0.04	17.14	0.00	2.162	7.15	0.00	6.2	93.8	0.0	0.46	0.78	0.81	1.72	3.8	0.003	0.59	0.0	0.04	16.30	0.00	2.499	5.52	1.30	5.7	94.3	0.0	0.46	0.38	0.79	0.82	1.29	6593	789	8	0	15	0	0	logfile
✔	8RK9	19265	2025-02-11	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.3	0.004	0.87	0.0	0.05	17.19	0.01	2.529	18.85	2.88	11.9	88.1	0.0	-3.53	4.07	0.28	0.11	-0.96	6138	816	6	0	0	0	0	logfile
✔	8RK4	19259	2025-02-12	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.995	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.67	0.0	0.04	11.73	0.00	2.474	8.31	0.00	7.4	92.4	0.3	-1.77	0.86	0.94	0.77	—	8373	1119	3	0	0	0	0	logfile
✔	8RK0	19254	2025-02-12	2023-12-22	3.38	4.52	3.57	4.1	0.005	0.92	0.0	0.06	23.31	0.01	2.111	16.47	0.14	12.9	87.1	0.0	-2.41	0.73	0.81	1.31	4.1	0.004	0.86	0.0	0.05	14.21	0.01	2.253	13.34	5.24	12.9	87.1	0.0	-2.32	0.40	0.73	0.82	1.38	6940	812	24	0	46	0	0	logfile
✔	8XK4	38415	2025-02-14	2023-12-22	2.94	3.11	2.95	3.1	0.004	0.63	0.0	0.05	15.22	0.00	1.749	7.92	0.00	3.7	96.0	0.3	-1.05	0.62	0.75	2.72	3.1	0.005	0.69	0.0	0.05	18.27	0.00	1.954	7.66	1.82	4.8	95.2	0.0	-0.77	1.06	0.71	0.82	2.86	6048	689	8	22	3	2	0	logfile
✘	8XJW	38408	2025-02-15	2023-12-22	2.84	3.04	2.80	3.0	0.003	0.58	0.0	0.04	16.62	0.00	2.132	9.85	0.00	5.6	94.3	0.1	-0.92	0.66	0.71	2.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6248	690	5	31	1	6	0	logfile
✔	8XJK	38399	2025-02-13	2023-12-21	2.63	2.89	2.67	2.9	0.004	0.43	0.0	0.04	9.76	0.00	2.232	4.34	0.84	1.3	98.7	0.0	1.56	0.70	0.85	4.80	2.9	0.005	0.59	0.0	0.04	15.02	0.00	2.481	4.51	2.43	2.0	98.0	0.0	2.13	1.20	0.68	0.85	4.42	8850	1140	6	0	1	0	0	logfile
✔	8XJM	38401	2025-02-13	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.54	0.0	0.04	14.70	0.00	2.499	5.31	2.64	1.7	98.3	0.0	2.19	0.52	0.68	0.83	3.88	8849	1140	6	0	1	0	0	logfile
✔	8XJL	38400	2025-02-13	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.003	0.53	0.0	0.04	14.55	0.00	2.493	5.42	1.90	1.8	98.2	0.0	2.07	0.58	0.67	0.80	3.21	8846	1140	6	0	1	0	0	logfile
✔	8XJN	38402	2025-02-13	2023-12-21	3.06	3.28	3.09	3.2	0.004	0.43	0.0	0.04	10.30	0.00	2.207	4.41	0.85	1.6	98.4	0.0	0.92	0.66	0.82	3.85	3.2	0.003	0.54	0.0	0.04	14.35	0.00	2.439	5.20	1.90	1.9	98.1	0.0	1.92	0.60	0.68	0.84	2.75	8948	1164	6	0	1	0	0	logfile
✔	8RJJ	19243	2025-02-13	2023-12-21	3.55	4.74	3.73	4.2	0.005	0.88	0.0	0.06	22.55	0.00	2.086	18.05	0.24	12.0	88.0	0.0	-1.62	0.74	0.81	1.22	4.2	0.003	0.79	0.0	0.05	14.39	0.00	2.306	13.07	3.37	11.5	88.5	0.0	-1.16	0.90	0.74	0.81	1.43	8672	1078	24	0	46	0	0	logfile
✔	8XiT	38389	2025-02-11	2023-12-20	3.2	3.65	3.27	3.6	0.003	0.64	0.0	0.04	13.31	0.00	2.287	4.58	0.00	2.0	98.0	0.0	3.41	0.64	0.83	1.90	3.6	0.003	0.66	0.0	0.04	15.21	0.00	2.610	3.92	1.71	1.9	98.1	0.0	4.07	0.91	0.65	0.85	1.48	6002	784	2	0	0	0	0	logfile
✔	8XiU	38390	2025-02-10	2023-12-20	4.0	4.13	4.19	4.1	0.002	0.55	0.0	0.04	10.64	0.00	2.357	6.37	1.08	1.5	98.5	0.0	2.65	0.48	0.70	—	4.1	0.003	0.78	0.0	0.04	15.51	0.01	2.542	11.43	5.38	1.8	98.2	0.0	1.50	0.50	0.50	0.71	—	2615	348	1	0	0	0	0	logfile
✔	8XJ4	38393	2025-02-11	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.69	0.0	0.04	18.16	0.01	2.396	4.52	0.94	3.3	96.7	0.0	1.70	1.18	0.69	0.79	2.32	5820	693	6	0	12	0	0	logfile

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