Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VE2	43162	2025-02-10	2023-12-18	3.3	3.54	3.12	3.6	0.002	0.57	0.0	0.05	10.51	0.00	2.295	5.05	0.00	1.1	98.9	0.0	1.60	0.75	0.77	4.10	3.5	0.004	0.61	0.0	0.05	12.87	0.01	2.602	7.15	5.50	2.6	97.4	0.0	-0.10	0.71	0.76	0.79	3.74	3105	465	4	0	0	0	0	logfile
✔	8VE8	43168	2025-02-14	2023-12-18	2.8	2.99	2.78	3.0	0.006	0.92	0.0	0.05	13.86	0.01	2.184	2.27	0.00	2.9	97.1	0.0	-0.04	0.63	0.87	6.08	3.0	0.003	0.58	0.0	0.04	13.58	0.00	2.520	3.57	2.69	1.9	98.1	0.0	0.39	1.65	0.62	0.88	5.15	10327	1035	34	0	294	0	0	logfile
✔	8XHS	38354	2025-02-11	2023-12-18	2.85	3.07	2.84	3.1	0.002	0.51	0.0	0.04	14.24	0.00	2.210	4.67	0.00	3.6	96.4	0.0	0.16	0.71	0.80	2.76	3.1	0.003	0.54	0.0	0.04	16.65	0.00	2.531	4.27	1.29	4.6	95.4	0.0	0.41	0.38	0.72	0.83	2.01	5067	618	2	0	0	23	0	logfile
✔	8VE0	43160	2025-02-11	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.003	0.58	0.0	0.05	15.03	0.00	2.541	7.56	0.85	1.5	98.5	0.0	0.62	0.39	0.73	0.81	3.91	3527	466	6	0	2	0	0	logfile
✔	8VE1	43161	2025-02-11	2023-12-18	2.7	2.67	2.66	2.8	0.006	0.58	0.0	0.05	13.15	0.00	2.258	2.95	0.26	2.2	97.8	0.0	0.62	0.75	0.85	5.80	2.8	0.005	0.67	0.0	0.05	16.10	0.00	1.707	5.75	1.82	2.6	97.4	0.0	-0.31	0.89	0.76	0.88	5.28	3656	466	10	0	2	27	0	logfile
✔	8RiK	19188	2025-02-13	2023-12-18	3.6	3.54	3.08	3.4	0.003	0.59	0.0	0.04	16.28	0.00	1.971	4.72	0.00	3.5	96.5	0.0	0.58	0.72	0.86	3.61	3.4	0.004	0.61	0.0	0.04	15.68	0.00	1.928	4.45	2.18	2.9	97.1	0.0	1.04	1.22	0.71	0.86	2.96	9353	1172	9	1	4	0	0	logfile
✔	8VE3	43163	2025-02-10	2023-12-18	3.3	3.47	3.13	3.4	0.005	0.65	0.0	0.05	11.27	0.00	2.204	11.69	0.00	3.7	96.3	0.0	0.45	0.75	0.78	5.02	3.4	0.003	0.61	0.0	0.05	13.14	0.00	2.575	8.57	4.30	2.8	97.2	0.0	0.23	0.39	0.75	0.79	3.51	3210	466	4	0	0	0	0	logfile
✔	8VE7	43167	2025-02-10	2023-12-18	4.0	4.19	3.24	4.1	0.003	0.61	0.0	0.04	11.54	0.00	2.139	11.66	0.00	1.7	98.3	0.0	2.80	0.41	0.79	—	4.1	0.003	0.62	0.0	0.04	15.06	0.00	2.517	8.80	2.97	3.1	96.9	0.0	2.86	1.94	0.42	0.83	—	2264	294	1	0	0	0	0	logfile
✔	8VE6	43166	2025-02-10	2023-12-18	4.1	4.24	3.95	4.2	0.004	0.67	0.0	0.05	11.95	0.01	2.230	9.76	0.00	3.7	96.3	0.0	-0.17	0.80	0.81	—	4.2	0.002	0.59	0.0	0.05	11.93	0.01	2.614	4.11	0.00	2.0	98.0	0.0	0.06	0.36	0.78	0.79	—	3178	465	5	0	1	0	0	logfile
✔	8RiA	19185	2025-02-13	2023-12-18	4.4	4.78	4.46	4.6	0.006	1.99	44.0	0.12	13.30	0.01	1.922	29.52	0.21	10.3	89.1	0.6	-1.40	0.66	0.77	—	4.6	0.003	0.82	0.0	0.05	13.36	0.01	2.408	15.07	0.00	7.6	92.1	0.4	-0.20	1.28	0.65	0.75	—	8786	1142	2	0	0	0	0	logfile
✔	8VE5	43165	2025-02-10	2023-12-18	3.4	3.67	3.31	3.8	0.005	0.58	0.0	0.05	11.51	0.01	2.216	7.40	0.00	2.2	97.8	0.0	0.60	0.72	0.80	4.97	3.8	0.002	0.56	0.0	0.05	14.24	0.01	2.602	5.24	2.64	2.2	97.8	0.0	0.20	0.37	0.71	0.80	4.27	3382	467	5	0	1	0	0	logfile
✔	8Ri9	19184	2025-02-11	2023-12-18	3.3	3.49	2.64	3.5	0.011	1.88	0.0	0.08	12.25	0.01	2.613	3.55	2.38	3.6	96.4	0.0	-1.61	0.44	0.71	6.15	3.7	0.003	0.54	0.0	0.05	11.83	0.00	2.539	2.37	0.48	10.2	89.8	0.0	-2.19	0.64	0.30	0.65	5.50	4230	295	5	0	0	0	2180	logfile
✔	8Ri1	19180	2025-02-13	2023-12-18	3.6	4.02	3.69	4.0	0.012	1.56	15.0	0.07	16.83	0.00	1.783	42.39	0.42	6.3	93.4	0.3	1.35	0.65	0.77	1.58	3.9	0.003	0.68	0.0	0.04	17.42	0.00	1.994	11.46	3.33	4.8	95.1	0.1	1.18	0.52	0.66	0.78	1.47	8834	1140	4	0	4	0	0	logfile
✔	8VE4	43164	2025-02-10	2023-12-18	3.3	3.35	3.10	3.3	0.003	0.56	0.0	0.05	10.45	0.01	2.302	7.13	0.00	1.3	98.7	0.0	1.77	0.74	0.75	4.32	3.3	0.003	0.62	0.0	0.05	13.02	0.01	2.597	8.15	3.81	2.2	97.8	0.0	0.07	0.46	0.75	0.78	3.40	3148	465	4	0	0	0	0	logfile
✘	8XH7	38343	2025-02-12	2023-12-17	3.52	3.84	3.46	3.9	0.005	0.91	0.0	0.06	14.93	0.00	2.376	7.40	2.17	4.5	95.5	0.0	2.45	0.57	0.77	1.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7902	966	6	0	0	0	0	logfile
✔	8XH6	38342	2025-02-10	2023-12-17	3.52	3.74	3.34	3.8	0.003	0.59	0.0	0.04	14.08	0.00	2.397	7.22	0.00	2.8	97.2	0.0	1.24	0.52	0.75	0.63	3.7	0.003	0.62	0.0	0.03	16.78	0.00	2.467	7.76	2.17	3.5	96.5	0.0	2.74	0.40	0.53	0.77	1.10	2634	322	2	0	0	0	0	logfile
✔	8RHB	19174	2025-02-13	2023-12-15	3.0	3.79	2.99	5.0	0.005	0.67	0.0	0.05	17.12	0.00	1.818	7.61	0.00	3.0	97.0	0.0	0.48	0.44	0.30	0.58	3.6	0.007	1.15	1.0	0.06	17.21	0.00	1.867	22.67	2.42	3.0	97.0	0.0	-0.33	1.61	0.66	0.78	0.91	9539	1196	9	1	5	0	0	logfile
✔	8XGo	38329	2025-02-13	2023-12-15	2.68	3.44	2.75	3.2	0.007	0.68	2.0	0.14	13.28	0.00	2.144	9.67	0.21	5.5	94.5	0.0	-0.06	0.72	0.87	3.24	3.2	0.003	0.68	0.0	0.04	16.13	0.00	2.260	7.39	1.96	5.3	94.7	0.0	0.22	1.24	0.71	0.87	2.92	9045	1155	8	0	3	0	0	logfile
✔	8XGM	38328	2025-02-14	2023-12-15	3.29	3.80	3.43	3.7	0.004	0.69	0.0	0.05	17.55	0.00	2.112	10.60	0.36	5.9	94.1	0.0	-0.68	0.58	0.78	2.33	3.7	0.004	0.64	0.0	0.04	17.61	0.00	2.503	7.47	3.94	6.1	93.9	0.0	-0.10	0.38	0.60	0.80	2.24	10319	1302	7	0	1	0	0	logfile
✔	8VDG	43149	2025-02-10	2023-12-15	3.35	3.57	3.30	3.6	0.006	0.82	0.0	0.05	13.86	0.01	2.274	7.04	0.35	6.5	93.5	0.0	-1.56	0.55	0.79	3.81	3.6	0.003	0.58	0.0	0.04	15.62	0.00	2.577	6.06	0.70	3.9	96.1	0.0	0.77	1.68	0.57	0.83	4.00	2583	323	3	0	0	0	0	logfile

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