Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8XGU	38332	2025-02-13	2023-12-15	3.0	3.72	3.05	3.6	0.008	0.66	2.0	0.23	13.14	0.00	2.111	10.42	0.21	7.0	93.0	0.0	-0.32	0.69	0.81	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8799	1134	7	0	3	0	0	logfile
✔	8XGo	38329	2025-02-13	2023-12-15	2.68	3.44	2.75	3.2	0.007	0.68	2.0	0.14	13.28	0.00	2.144	9.67	0.21	5.5	94.5	0.0	-0.06	0.72	0.87	3.24	3.2	0.003	0.68	0.0	0.04	16.13	0.00	2.260	7.39	1.96	5.3	94.7	0.0	0.22	1.24	0.71	0.87	2.92	9045	1155	8	0	3	0	0	logfile
✔	8RHB	19174	2025-02-13	2023-12-15	3.0	3.79	2.99	5.0	0.005	0.67	0.0	0.05	17.12	0.00	1.818	7.61	0.00	3.0	97.0	0.0	0.48	0.44	0.30	0.58	3.6	0.007	1.15	1.0	0.06	17.21	0.00	1.867	22.67	2.42	3.0	97.0	0.0	-0.33	1.61	0.66	0.78	0.91	9539	1196	9	1	5	0	0	logfile
✔	8XGM	38328	2025-02-14	2023-12-15	3.29	3.80	3.43	3.7	0.004	0.69	0.0	0.05	17.55	0.00	2.112	10.60	0.36	5.9	94.1	0.0	-0.68	0.58	0.78	2.33	3.7	0.004	0.64	0.0	0.04	17.61	0.00	2.503	7.47	3.94	6.1	93.9	0.0	-0.10	0.38	0.60	0.80	2.24	10319	1302	7	0	1	0	0	logfile
✔	8VCV	43141	2025-02-14	2023-12-14	2.8	3.10	2.90	3.1	0.006	0.93	0.0	0.05	15.78	0.01	2.095	3.17	0.00	2.5	97.5	0.0	-0.59	0.62	0.86	6.05	3.1	0.003	0.60	0.0	0.04	13.34	0.00	2.436	4.91	2.58	1.9	98.1	0.0	0.39	0.36	0.59	0.87	5.04	10466	1035	38	0	311	0	0	logfile
✔	8XFT	38309	2025-02-13	2023-12-14	3.24	3.25	2.62	3.2	0.003	0.52	0.0	0.04	10.57	0.00	2.208	6.93	1.54	5.5	94.5	0.0	0.22	0.68	0.83	3.29	3.2	0.003	0.60	0.0	0.04	13.65	0.00	2.407	6.70	2.68	6.1	93.9	0.0	0.29	0.37	0.74	0.87	2.99	8742	1122	4	0	0	0	0	logfile
✔	8VCH	43136	2025-02-12	2023-12-14	2.55	2.23	2.74	3.3	0.004	0.58	0.0	0.04	15.04	0.00	2.260	5.83	0.78	2.2	97.8	0.0	2.09	0.72	0.80	2.33	3.3	0.003	0.52	0.0	0.04	15.93	0.00	2.545	5.03	2.85	1.9	98.1	0.0	3.15	0.30	0.74	0.82	1.67	7614	1012	6	0	2	0	0	logfile
✔	8RGA	19131	2025-02-13	2023-12-13	3.7	4.13	3.83	4.1	0.005	0.93	1.0	0.05	16.16	0.01	2.091	14.15	1.04	6.2	92.8	1.0	0.17	0.61	0.79	0.56	4.1	0.003	0.80	0.0	0.04	17.01	0.00	2.509	11.14	5.08	6.6	92.9	0.5	1.04	0.45	0.61	0.79	0.79	8802	1144	2	0	0	0	0	logfile
✔	8RGH	19133	2025-02-14	2023-12-13	3.9	4.34	3.89	4.0	0.012	1.88	4.0	0.10	14.04	0.02	2.504	0.53	0.00	4.7	95.3	0.0	-1.05	0.82	0.66	1.27	4.0	0.003	0.67	0.0	0.04	15.97	0.00	2.530	10.47	1.05	4.0	96.0	0.0	1.00	0.90	0.84	0.69	1.13	9682	1287	6	0	0	0	0	logfile
✔	8RGG	19132	2025-02-12	2023-12-13	4.0	4.37	3.92	4.0	0.012	1.85	5.0	0.10	13.18	0.01	2.531	0.14	0.00	4.1	95.9	0.0	-0.27	0.70	0.46	—	4.0	0.003	0.81	0.0	0.04	15.58	0.00	2.406	13.65	2.74	6.9	93.1	0.0	-0.65	2.96	0.76	0.60	—	7679	1156	7	0	0	0	0	logfile
✔	8REZ	19113	2025-02-13	2023-12-12	3.3	3.50	3.27	3.5	0.004	0.93	4.0	0.05	15.79	0.01	2.191	15.88	0.52	7.5	91.8	0.7	0.15	0.56	0.75	0.85	3.5	0.003	0.63	0.0	0.04	16.88	0.00	2.385	8.75	1.97	5.9	93.9	0.2	1.07	0.53	0.57	0.79	0.90	8802	1144	2	0	0	0	0	logfile
✘	8VBi	43126	2025-02-13	2023-12-12	2.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8514	944	4	38	3	0	0	logfile
✔	8RFB	19117	2025-02-11	2023-12-12	4.01	4.26	4.04	4.2	0.015	1.68	0.0	0.10	11.24	0.01	2.144	5.97	2.04	2.7	97.3	0.0	0.42	0.73	0.77	—	4.2	0.003	0.66	0.0	0.04	13.35	0.00	2.489	8.51	0.00	3.2	96.8	0.0	0.23	0.95	0.71	0.78	—	4632	597	1	0	0	0	0	logfile
✘	8VBE	43122	2025-02-12	2023-12-12	2.6	3.21	2.56	3.1	0.004	0.68	0.0	0.05	19.82	0.00	2.052	4.72	4.46	4.0	95.4	0.5	-0.35	0.79	0.86	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8421	931	4	39	3	0	0	logfile
✔	8XEL	38293	2025-02-14	2023-12-12	2.8	3.35	2.85	10.0	0.012	1.77	5.0	0.10	13.06	0.02	2.551	0.00	0.88	4.4	95.2	0.4	-0.52	0.19	0.01	0.17	2.9	0.004	0.79	0.0	0.05	16.62	0.01	2.224	75.69	4.40	9.0	91.0	0.0	-2.00	1.49	0.34	0.33	0.07	10119	1071	2	0	0	0	1837	logfile
✘	8VBA	43118	2025-02-13	2023-12-12	3.29	3.69	3.34	3.8	0.010	1.31	0.0	0.12	12.48	0.00	2.200	14.87	0.51	4.6	94.9	0.5	-0.19	0.67	0.76	3.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9416	1260	4	0	39	0	0	logfile
✘	8REV	19109	2025-02-12	2023-12-12	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7797	898	7	26	2	0	0	logfile
✔	8XEK	38292	2025-02-14	2023-12-12	2.9	3.42	2.88	3.2	0.004	0.58	0.0	0.04	14.01	0.00	2.081	4.16	0.22	2.9	97.1	0.0	0.38	0.85	0.90	4.28	3.2	0.003	0.55	0.0	0.04	14.97	0.00	2.161	17.63	1.65	3.6	96.4	0.0	0.35	0.77	0.84	0.90	3.68	10130	1073	2	0	0	0	1840	logfile
✔	8XEJ	38291	2025-02-12	2023-12-12	3.66	3.95	3.64	3.9	0.004	0.84	0.0	0.04	13.95	0.00	2.222	7.98	3.64	4.9	95.1	0.0	0.15	0.66	0.77	1.42	3.9	0.003	0.73	0.0	0.04	15.82	0.00	2.452	6.72	4.68	4.0	96.0	0.0	1.52	2.84	0.70	0.80	1.68	7153	916	5	0	1	0	0	logfile
✔	8VB8	43116	2025-02-13	2023-12-12	3.0	3.58	2.96	3.4	0.004	0.66	0.0	0.05	21.08	0.01	2.019	7.50	4.88	5.2	94.6	0.2	-1.07	0.84	0.89	2.80	3.4	0.004	0.90	0.0	0.04	20.74	0.00	1.025	5.88	2.26	5.0	94.8	0.2	-0.07	0.30	0.83	0.89	2.63	8511	951	4	37	3	0	0	logfile

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