Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VAC	43088	2025-02-11	2023-12-11	3.4	3.62	3.46	3.6	0.012	0.79	0.0	0.05	15.87	0.00	2.232	11.25	0.00	5.7	94.3	0.0	1.17	0.79	0.83	1.66	3.6	0.003	0.60	0.0	0.04	16.73	0.00	2.587	7.57	2.76	4.3	95.7	0.0	1.89	0.36	0.79	0.85	1.03	4669	581	2	0	1	0	0	logfile
✔	8VAF	43090	2025-02-11	2023-12-11	3.5	3.70	3.53	3.6	0.003	0.59	0.0	0.04	15.27	0.00	2.216	6.11	0.00	5.2	94.8	0.0	1.47	0.81	0.84	2.47	3.6	0.003	0.55	0.0	0.04	16.96	0.00	2.551	4.36	1.38	5.0	95.0	0.0	1.55	0.38	0.81	0.85	2.30	4623	581	1	0	0	0	0	logfile
✔	8XDL	38280	2025-02-13	2023-12-11	2.44	2.66	2.49	2.6	0.004	0.77	0.0	0.04	18.26	0.01	2.286	4.95	6.74	2.6	97.4	0.0	1.09	0.70	0.83	3.76	2.6	0.004	0.74	0.0	0.05	17.48	0.01	2.449	3.80	2.57	2.3	97.7	0.0	1.19	0.53	0.70	0.86	3.55	8746	1109	6	0	6	0	0	logfile
✔	8XDM	38281	2025-02-13	2023-12-11	2.45	2.66	2.51	2.6	0.003	0.67	0.0	0.04	17.96	0.00	2.238	5.36	6.52	2.1	97.9	0.0	1.66	0.66	0.82	2.67	2.6	0.004	0.73	0.0	0.05	17.26	0.00	2.401	3.69	3.85	2.1	97.9	0.0	1.37	1.95	0.69	0.86	3.50	8746	1109	6	0	6	0	0	logfile
✔	8XEF	38288	2025-02-11	2023-12-11	4.41	6.10	4.46	5.4	0.004	1.00	0.0	0.06	12.95	0.01	1.886	13.27	0.00	9.9	90.0	0.2	-3.14	0.77	0.76	—	5.4	0.004	0.78	0.0	0.05	13.00	0.01	2.368	21.43	0.00	10.8	89.0	0.2	-2.99	0.92	0.78	0.79	—	5007	649	5	0	0	0	0	logfile
✔	8VAE	43089	2025-02-11	2023-12-11	3.7	3.91	3.77	3.8	0.003	0.68	0.0	0.04	15.27	0.00	2.251	9.01	0.00	2.9	97.1	0.0	1.75	0.83	0.81	1.63	3.8	0.003	0.68	0.0	0.04	17.00	0.00	2.548	9.12	1.97	3.1	96.9	0.0	1.97	0.77	0.83	0.82	1.77	4653	581	2	0	3	0	0	logfile
✔	8XE9	38283	2025-02-10	2023-12-11	3.3	4.04	3.24	3.8	0.003	0.56	0.0	0.04	13.28	0.01	2.265	6.71	0.00	7.5	92.5	0.0	-2.10	0.64	0.81	2.76	3.8	0.003	0.67	0.0	0.04	15.78	0.00	2.514	7.65	3.40	7.5	92.5	0.0	-1.12	0.92	0.61	0.85	2.69	3266	420	3	0	0	0	0	logfile
✔	8XCT	38254	2025-02-11	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.003	0.53	0.0	0.04	16.43	0.00	2.474	4.22	0.88	2.9	96.9	0.2	1.65	1.73	0.45	0.90	4.16	3358	417	2	0	1	28	0	logfile
✔	8XDG	38277	2025-02-12	2023-12-10	3.1	3.24	2.99	3.4	0.010	1.01	0.0	0.08	12.83	0.01	2.471	10.11	0.76	2.8	97.2	0.0	1.33	0.69	0.84	2.59	3.4	0.003	0.55	0.0	0.04	15.19	0.00	2.539	7.31	1.53	2.7	97.3	0.0	2.06	1.92	0.69	0.86	2.63	7938	1050	3	0	0	0	0	logfile
✔	8XD1	38262	2025-02-11	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.002	0.55	0.0	0.04	17.32	0.01	2.496	5.77	0.88	2.9	97.1	0.0	1.60	0.46	0.42	0.88	2.94	3307	416	2	0	1	9	0	logfile
✔	8XD6	38267	2025-02-11	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.003	0.51	0.0	0.04	16.24	0.00	2.506	5.23	1.17	1.4	98.6	0.0	1.65	0.39	0.47	0.92	4.70	3402	419	2	0	4	44	0	logfile
✔	8XDA	38271	2025-02-12	2023-12-10	3.0	3.46	3.00	3.4	0.008	0.86	3.0	0.06	12.75	0.01	2.291	10.69	0.98	3.1	96.9	0.0	0.56	0.58	0.79	3.43	3.4	0.003	0.58	0.0	0.04	14.05	0.00	2.586	9.72	1.71	2.6	97.4	0.0	1.90	0.47	0.64	0.84	2.95	7620	984	9	0	6	6	0	logfile
✔	8XDF	38276	2025-02-12	2023-12-10	2.4	2.35	2.23	2.6	0.005	0.57	0.0	0.04	14.78	0.01	2.262	6.60	0.00	2.6	97.4	0.0	1.82	0.65	0.87	3.50	2.6	0.003	0.54	0.0	0.04	14.31	0.01	2.618	5.86	1.61	3.2	96.8	0.0	2.62	0.34	0.62	0.88	3.30	8025	1050	3	0	0	0	0	logfile
✔	8XCW	38257	2025-02-11	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.002	0.50	0.0	0.04	16.93	0.00	2.442	4.83	0.88	2.7	97.3	0.0	1.93	0.41	0.48	0.91	3.23	3347	416	2	0	2	17	0	logfile
✔	8XDE	38275	2025-02-12	2023-12-10	2.3	3.03	2.43	2.9	0.005	0.53	0.0	0.04	14.68	0.01	2.152	6.25	0.00	3.0	97.0	0.0	1.44	0.66	0.91	3.73	2.9	0.003	0.51	0.0	0.04	14.99	0.00	2.619	4.95	1.27	2.7	97.3	0.0	2.69	0.26	0.53	0.84	3.63	8010	1035	3	0	0	0	0	logfile
✔	8XCo	38249	2025-02-11	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.002	0.50	0.0	0.04	17.21	0.00	2.446	4.08	0.88	3.1	96.9	0.0	2.03	0.55	0.50	0.93	4.48	3335	416	2	0	1	14	0	logfile
✔	8XDD	38274	2025-02-12	2023-12-10	3.0	3.80	3.09	3.6	0.006	0.70	0.0	0.04	12.32	0.01	2.214	12.13	0.00	2.7	97.3	0.0	1.83	0.63	0.87	3.42	3.6	0.003	0.65	0.0	0.04	14.36	0.00	2.511	8.44	0.74	2.8	97.2	0.0	2.72	0.39	0.61	0.87	2.84	7668	993	6	0	6	0	0	logfile
✔	8XCV	38256	2025-02-11	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.81	0.00	2.549	5.01	0.29	2.7	97.3	0.0	1.92	0.85	0.48	0.91	4.15	3310	415	2	0	1	7	0	logfile
✔	8XDH	38278	2025-02-12	2023-12-10	3.1	3.21	2.98	3.2	0.010	0.94	0.0	0.06	12.35	0.01	2.304	11.23	0.00	3.4	96.6	0.0	1.08	0.49	0.72	3.77	3.2	0.004	0.57	0.0	0.04	14.29	0.00	2.586	8.39	2.15	3.7	96.3	0.0	1.98	0.37	0.69	0.87	3.37	8310	1074	6	0	15	0	0	logfile
✔	8XD0	38261	2025-02-11	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.003	0.53	0.0	0.04	17.81	0.00	2.557	5.56	0.88	2.9	96.9	0.2	1.58	0.36	0.46	0.90	3.72	3357	417	2	0	2	14	0	logfile

• ← previous
• Page 41 of 255
• next →