Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCW	38257	2025-02-11	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.002	0.50	0.0	0.04	16.93	0.00	2.442	4.83	0.88	2.7	97.3	0.0	1.93	0.41	0.48	0.91	3.23	3347	416	2	0	2	17	0	logfile
✔	8XCT	38254	2025-02-11	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.003	0.53	0.0	0.04	16.43	0.00	2.474	4.22	0.88	2.9	96.9	0.2	1.65	1.73	0.45	0.90	4.16	3358	417	2	0	1	28	0	logfile
✔	8XCM	38247	2025-02-13	2023-12-09	3.08	3.84	3.13	3.7	0.030	1.33	0.0	0.46	17.72	0.01	2.118	18.72	0.68	4.8	95.2	0.0	-0.04	0.75	0.83	2.38	3.7	0.004	1.07	0.0	0.06	17.71	0.00	1.804	12.56	4.18	4.6	95.4	0.0	0.39	0.46	0.74	0.83	2.36	8605	1089	5	0	6	0	0	logfile
✔	8XCi	38244	2025-02-13	2023-12-09	3.57	3.94	3.60	3.9	0.017	2.34	11.0	0.11	19.30	0.01	1.529	43.22	14.39	14.1	82.6	3.3	-3.74	0.52	0.82	0.99	3.9	0.003	0.74	0.0	0.04	18.00	0.01	2.379	11.82	4.48	7.1	92.4	0.4	-1.78	0.52	0.50	0.73	1.74	8842	1143	3	0	0	0	0	logfile
✔	8XCN	38248	2025-02-13	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.13	0.0	0.06	17.51	0.01	1.621	13.99	3.50	4.5	95.4	0.1	0.42	1.17	0.74	0.83	2.21	8601	1089	5	0	6	0	0	logfile
✔	8XCC	38239	2025-02-11	2023-12-08	3.2	3.79	3.20	3.6	0.004	0.58	0.0	0.04	19.55	0.00	2.197	6.07	0.21	3.0	97.0	0.0	1.81	0.79	0.87	3.09	3.6	0.004	0.54	0.0	0.04	19.79	0.00	2.553	4.86	3.38	2.3	97.7	0.0	2.62	0.21	0.80	0.87	2.85	5617	546	4	56	0	0	0	logfile
✔	8XCD	38240	2025-02-11	2023-12-08	3.49	3.79	3.48	3.9	0.005	0.66	0.0	0.04	18.64	0.01	2.156	9.36	0.32	4.3	95.7	0.0	0.81	0.56	0.68	1.45	3.8	0.003	0.61	0.0	0.04	16.18	0.00	2.588	8.13	4.60	3.3	96.7	0.0	0.98	1.22	0.62	0.79	1.24	5626	727	4	0	2	0	0	logfile
✔	8XCA	38238	2025-02-12	2023-12-08	3.1	3.84	3.13	3.5	0.002	0.53	0.0	0.03	21.67	0.00	2.212	7.23	0.17	2.7	97.3	0.0	1.11	0.79	0.87	3.07	3.5	0.002	0.53	0.0	0.03	21.54	0.00	2.429	6.18	3.09	2.7	97.3	0.0	1.37	0.73	0.79	0.86	3.20	7106	668	4	79	0	0	0	logfile
✔	8V91	43047	2025-02-14	2023-12-07	2.6	3.28	2.75	3.1	0.003	0.55	0.0	0.04	14.09	0.00	2.087	8.78	0.00	2.8	97.2	0.0	0.68	0.70	0.79	3.95	3.1	0.003	0.63	0.0	0.04	15.16	0.00	2.546	7.56	2.38	3.2	96.8	0.0	1.66	0.90	0.68	0.78	3.18	9913	1320	10	0	0	87	0	logfile
✔	8XBS	38227	2025-02-14	2023-12-07	2.21	2.40	2.28	2.5	0.006	1.17	24.0	0.08	22.13	0.01	2.189	8.39	3.17	3.6	96.4	0.0	1.61	0.70	0.86	4.39	2.5	0.003	0.64	0.0	0.04	17.69	0.00	2.538	4.91	2.64	3.2	96.8	0.0	2.02	1.12	0.70	0.87	4.35	10658	1282	8	0	22	0	0	logfile
✔	8V93	43048	2025-02-11	2023-12-07	3.12	3.33	3.16	3.4	0.005	0.98	0.0	0.06	13.54	0.01	2.308	7.40	0.00	6.0	93.5	0.5	-1.91	0.52	0.47	0.68	3.3	0.005	0.81	0.0	0.05	15.64	0.01	2.480	19.92	3.12	9.1	90.7	0.2	-1.60	2.29	0.65	0.68	2.68	4686	614	5	0	0	0	0	logfile
✘	8XBX	38232	2025-02-11	2023-12-07	4.36	6.89	4.04	7.5	0.005	0.90	0.0	0.04	18.16	0.01	2.260	13.70	0.00	0.9	99.1	0.0	-0.16	0.65	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5873	663	5	38	0	0	0	logfile
✔	8XBW	38231	2025-02-10	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.25	0.0	0.06	23.77	0.01	2.512	25.80	2.48	1.7	98.3	0.0	-1.70	2.03	0.81	0.82	0.77	2671	242	5	36	0	0	0	logfile
✔	8V8S	43044	2025-02-11	2023-12-06	2.2	2.62	2.16	2.5	0.002	0.47	0.0	0.04	14.02	0.00	2.203	6.43	0.00	3.2	96.8	0.0	0.33	0.63	0.78	4.97	2.5	0.003	0.60	0.0	0.04	14.48	0.00	2.645	5.60	2.16	3.6	96.4	0.0	2.00	1.59	0.64	0.78	4.14	6717	892	8	0	0	101	0	logfile
✔	8XB4	38210	2025-02-11	2023-12-05	2.92	3.16	2.96	3.2	0.005	0.61	0.0	0.04	14.47	0.00	2.258	7.33	0.00	1.9	98.1	0.0	-1.88	0.61	0.81	3.82	3.2	0.003	0.56	0.0	0.04	14.69	0.00	2.559	5.94	1.55	1.9	98.1	0.0	1.29	1.15	0.59	0.81	3.25	4307	536	2	0	1	0	0	logfile
✔	8XAN	38202	2025-02-12	2023-12-05	3.5	3.12	3.41	3.4	0.011	1.19	0.0	0.08	14.66	0.02	2.299	9.73	1.56	4.5	95.5	0.0	-2.22	0.57	0.76	2.31	3.3	0.002	0.61	0.0	0.04	16.32	0.00	2.606	4.18	1.82	2.3	97.7	0.0	-1.26	1.54	0.60	0.82	2.18	6963	918	3	0	0	0	0	logfile
✔	8V81	43014	2025-02-13	2023-12-04	3.6	2.82	3.57	3.6	0.003	0.53	0.0	0.04	19.32	0.00	1.993	6.01	0.50	3.7	96.3	0.0	-0.73	0.63	0.79	1.20	3.6	0.004	0.86	0.0	0.04	19.06	0.00	1.999	4.94	6.64	2.8	97.2	0.0	-0.27	0.28	0.64	0.79	1.07	9258	1132	2	0	11	0	0	logfile
✔	8RBG	19031	2025-02-11	2023-12-04	4.9	5.29	4.93	5.0	0.013	1.92	5.0	0.11	12.43	0.02	1.819	10.03	0.62	2.7	97.0	0.3	0.61	0.78	0.66	—	5.0	0.003	0.69	0.0	0.04	13.84	0.00	1.988	14.63	0.00	3.0	97.0	0.0	0.72	1.28	0.83	0.80	—	6008	737	2	0	3	0	0	logfile
✔	8V85	43023	2025-02-10	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.6	0.004	0.93	0.0	0.04	13.66	0.00	2.424	28.18	0.58	5.6	94.4	0.0	-0.43	4.16	0.35	0.28	0.83	1539	197	1	0	0	0	0	logfile
✔	8V7Z	43011	2025-02-13	2023-12-04	3.4	2.66	3.42	3.5	0.002	0.58	0.0	0.04	19.31	0.00	2.004	11.77	0.41	4.8	95.2	0.0	-0.10	0.50	0.72	1.84	3.5	0.004	0.61	0.0	0.04	19.18	0.00	1.939	9.80	5.87	5.4	94.5	0.1	-0.08	0.23	0.50	0.72	1.83	8977	1104	2	0	10	0	0	logfile

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