Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RB5	19026	2025-02-13	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.003	0.56	0.0	0.03	17.65	0.01	2.406	6.96	0.43	3.0	97.0	0.0	1.89	1.42	0.31	0.80	1.63	8772	540	3	0	0	0	4422	logfile
✘	8V6U	42999	2025-02-12	2023-12-03	3.0	2.35	—	3.0	0.011	1.67	3.0	0.09	14.06	0.01	1.999	1.24	1.31	4.1	95.8	0.1	0.40	0.83	0.79	4.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8211	1090	6	0	1	0	0	logfile
✔	8RB7	19027	2025-02-11	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.59	0.0	0.04	17.80	0.01	2.498	8.55	1.28	2.2	97.8	0.0	1.73	2.07	0.28	0.76	1.59	5848	360	2	0	0	0	2948	logfile
✔	8RAo	19021	2025-02-11	2023-12-01	4.4	4.65	4.05	3.9	0.002	0.46	0.0	0.04	10.68	0.00	2.016	4.10	0.00	1.6	98.4	0.0	2.69	0.74	0.77	—	3.9	0.003	0.62	0.0	0.04	12.87	0.00	1.975	11.15	0.00	2.2	97.8	0.0	1.75	1.36	0.75	0.81	—	5781	694	3	9	3	0	0	logfile
✔	8RAN	19020	2025-02-11	2023-12-01	3.25	3.85	3.27	3.4	0.001	0.35	0.0	0.04	10.56	0.00	2.076	3.31	0.00	1.2	98.8	0.0	3.22	0.64	0.79	1.84	3.4	0.003	0.57	0.0	0.04	13.78	0.00	2.504	9.05	0.65	1.9	98.1	0.0	1.37	1.31	0.65	0.85	2.17	5799	690	2	13	0	0	0	logfile
✔	8R9Y	19016	2025-02-12	2023-11-30	3.0	3.63	3.03	3.5	0.003	0.59	0.0	0.04	13.51	0.00	2.255	6.05	0.00	5.1	94.9	0.0	0.13	0.84	0.83	3.66	3.5	0.003	0.65	0.0	0.05	15.59	0.00	2.481	7.27	2.63	5.3	94.7	0.0	0.24	2.03	0.85	0.85	3.76	7446	972	7	0	3	0	0	logfile
✔	8R9Z	19017	2025-02-12	2023-11-30	2.9	3.45	2.86	3.3	0.003	0.57	0.0	0.04	13.35	0.00	2.272	5.23	0.00	5.6	94.4	0.0	0.16	0.88	0.87	4.35	3.3	0.004	0.69	0.0	0.05	15.12	0.00	2.480	6.53	1.80	4.8	95.2	0.0	0.22	1.09	0.87	0.86	3.99	7441	972	7	0	3	0	0	logfile
✔	8V5D	42982	2025-02-11	2023-11-30	3.0	3.76	3.05	3.6	0.003	0.52	0.0	0.04	9.90	0.00	2.219	12.09	1.84	4.1	95.9	0.0	0.80	0.69	0.61	1.04	3.6	0.004	0.90	0.0	0.05	15.04	0.01	2.486	17.98	2.70	5.7	94.1	0.1	-0.39	2.09	0.68	0.62	0.91	6694	851	1	0	0	0	0	logfile
✔	8R9X	19015	2025-02-11	2023-11-30	3.1	3.71	3.14	3.5	0.004	0.65	0.0	0.04	16.48	0.00	2.277	5.12	0.00	4.4	95.6	0.0	-0.47	0.72	0.88	3.81	3.5	0.004	0.66	0.0	0.04	14.78	0.00	2.486	5.26	2.24	3.5	96.5	0.0	0.04	0.53	0.66	0.87	3.93	3782	461	8	0	15	0	0	logfile
✔	8R8V	19012	2025-02-14	2023-11-30	3.6	3.76	3.65	3.7	0.005	0.72	0.0	0.05	15.81	0.01	2.238	7.68	0.61	3.6	96.4	0.0	-0.34	0.73	0.80	2.37	3.7	0.003	0.61	0.0	0.04	16.56	0.00	2.225	5.56	3.12	3.9	96.1	0.0	0.56	1.06	0.72	0.80	2.21	10202	1292	8	0	12	0	0	logfile
✔	8X9P	38178	2025-02-12	2023-11-30	3.54	3.88	3.62	3.8	0.004	0.67	0.0	0.04	16.06	0.00	2.145	17.35	0.12	3.1	96.9	0.0	0.51	0.80	0.77	1.64	3.7	0.003	0.73	0.0	0.04	17.22	0.00	2.510	13.45	3.11	2.8	97.2	0.0	0.22	1.08	0.80	0.79	1.22	7669	973	3	0	0	0	0	logfile
✔	8R8U	19011	2025-02-14	2023-11-30	3.1	3.24	3.12	3.2	0.002	0.48	0.0	0.04	16.32	0.00	1.792	4.52	0.00	2.4	97.6	0.0	0.37	0.75	0.86	3.03	3.2	0.003	0.51	0.0	0.04	16.70	0.00	2.231	3.77	2.89	2.1	97.9	0.0	0.37	1.91	0.74	0.86	2.94	10140	1280	6	0	12	0	0	logfile
✔	8R8D	18999	2025-02-12	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.003	0.66	0.0	0.05	14.91	0.01	2.501	6.96	2.62	4.7	95.3	0.0	0.30	1.13	0.67	0.82	3.40	7062	920	14	0	12	18	0	logfile
✔	8V4F	42970	2025-02-10	2023-11-29	2.68	2.21	2.74	2.1	0.005	0.99	0.0	0.06	13.78	0.01	2.360	4.27	0.00	4.0	96.0	0.0	-0.42	0.76	0.78	3.91	2.0	0.005	0.64	0.0	0.05	16.53	0.00	2.556	6.48	3.16	5.0	95.0	0.0	-0.27	1.12	0.78	0.79	4.39	3237	412	3	0	0	0	0	logfile
✘	8R8T	19009	2025-02-10	2023-11-29	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3256	418	2	0	1	0	0	logfile
✔	8R8K	19002	2025-02-11	2023-11-29	3.41	3.66	3.37	3.7	0.003	0.49	0.0	0.04	15.09	0.00	2.145	4.83	0.23	2.6	97.4	0.0	-0.18	0.58	0.84	2.55	3.7	0.003	0.50	0.0	0.04	15.63	0.00	2.624	4.06	3.18	4.3	95.7	0.0	-0.18	0.30	0.59	0.85	2.39	4005	515	3	0	0	0	0	logfile
✔	8V4N	42974	2025-02-10	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.002	0.54	0.0	0.04	17.77	0.00	2.652	1.71	2.80	1.9	98.1	0.0	0.88	0.99	0.31	0.87	3.51	2067	263	1	0	0	0	0	logfile
✔	8V4Q	42975	2025-02-11	2023-11-29	2.71	2.89	2.72	2.9	0.003	0.53	0.0	0.05	13.53	0.00	2.201	1.68	0.48	1.7	98.3	0.0	0.26	0.55	0.85	3.48	2.9	0.003	0.51	0.0	0.04	16.86	0.00	2.486	1.01	2.25	1.9	98.1	0.0	0.36	0.93	0.58	0.89	3.19	5993	761	3	0	0	0	0	logfile
✔	8R8Q	19006	2025-02-11	2023-11-29	4.08	4.33	4.04	4.3	0.003	0.69	0.0	0.04	13.96	0.00	2.210	7.88	0.17	7.9	92.1	0.0	-1.26	0.66	0.79	—	4.3	0.003	0.72	0.0	0.04	13.65	0.00	2.382	7.35	0.00	8.6	91.2	0.1	-0.89	0.39	0.66	0.80	—	5702	732	3	0	5	0	0	logfile
✔	8V3S	42952	2025-02-11	2023-11-28	3.6	3.74	3.40	3.7	0.011	1.52	0.0	0.09	12.86	0.01	1.978	2.51	0.00	3.9	96.1	0.0	-1.14	0.72	0.75	3.31	3.7	0.003	0.61	0.0	0.04	14.55	0.00	2.062	6.21	2.73	2.2	97.6	0.2	0.49	0.60	0.78	0.81	3.07	3909	501	4	0	5	0	0	logfile

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