Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V3Q	42950	2025-02-11	2023-11-28	3.1	3.32	2.96	3.3	0.009	1.22	0.0	0.07	14.29	0.01	2.109	1.78	0.00	2.8	97.2	0.0	-1.29	0.66	0.76	4.11	3.3	0.003	0.57	0.0	0.04	15.28	0.00	2.012	3.95	1.64	1.6	98.4	0.0	0.92	0.55	0.77	0.85	3.38	4030	503	4	0	9	0	0	logfile
✔	8X8Q	38156	2025-02-11	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.003	0.57	0.0	0.04	15.60	0.00	2.603	8.21	1.14	1.3	98.7	0.0	0.25	0.35	0.84	0.87	3.61	4949	622	3	0	1	0	0	logfile
✔	8V3S	42952	2025-02-11	2023-11-28	3.6	3.74	3.40	3.7	0.011	1.52	0.0	0.09	12.86	0.01	1.978	2.51	0.00	3.9	96.1	0.0	-1.14	0.72	0.75	3.31	3.7	0.003	0.61	0.0	0.04	14.55	0.00	2.062	6.21	2.73	2.2	97.6	0.2	0.49	0.60	0.78	0.81	3.07	3909	501	4	0	5	0	0	logfile
✔	8X7o	38105	2025-02-11	2023-11-24	3.5	3.62	3.02	3.7	0.019	1.48	0.0	0.08	11.60	0.01	2.280	17.38	0.00	9.4	90.6	0.0	-4.07	0.33	0.58	5.29	3.6	0.005	0.70	0.0	0.05	15.15	0.00	2.591	10.63	5.53	9.1	90.9	0.0	-3.51	1.99	0.47	0.87	3.11	3996	550	18	0	12	0	0	logfile
✔	8X7Q	38107	2025-02-11	2023-11-24	2.7	2.32	2.42	3.3	0.014	1.60	0.0	0.08	14.72	0.01	2.275	17.91	0.00	9.4	90.6	0.0	-4.07	0.18	0.24	0.92	3.0	0.003	0.72	0.0	0.05	17.93	0.00	2.615	10.27	5.79	4.2	95.8	0.0	-3.46	2.16	0.49	0.86	2.95	3936	550	14	0	4	0	0	logfile
✔	8X7B	38097	2025-02-11	2023-11-23	3.0	3.06	2.30	3.3	0.017	1.42	0.0	0.08	17.12	0.01	2.297	30.43	0.00	9.4	90.6	0.0	-4.07	0.39	0.50	4.60	3.3	0.004	0.67	0.0	0.05	16.98	0.00	2.568	11.28	2.11	6.8	93.2	0.0	-3.34	1.34	0.59	0.84	3.61	4020	550	16	0	12	0	0	logfile
✔	8V2C	42905	2025-02-11	2023-11-22	3.46	3.79	3.43	3.7	0.003	0.51	0.0	0.04	22.68	0.00	2.336	3.32	0.20	3.1	96.9	0.0	-1.76	0.70	0.83	1.65	3.6	0.003	0.66	0.0	0.04	15.43	0.00	2.528	4.21	2.56	4.6	95.4	0.0	0.50	1.02	0.69	0.86	2.05	4600	551	10	0	13	0	0	logfile
✔	8V2A	42903	2025-02-11	2023-11-22	3.59	3.97	3.51	3.8	0.003	0.58	0.0	0.04	16.76	0.00	2.267	6.35	0.20	3.3	96.7	0.0	-1.69	0.73	0.77	1.22	3.7	0.003	0.69	0.0	0.04	14.55	0.00	2.564	7.35	3.04	3.5	96.5	0.0	0.46	0.59	0.74	0.79	1.52	4522	551	8	0	10	0	0	logfile
✔	8R68	18948	2025-02-10	2023-11-21	3.6	3.73	3.56	3.7	0.003	0.65	0.0	0.04	13.09	0.01	2.228	17.63	0.30	5.6	94.4	0.0	-1.70	0.53	0.52	1.77	3.7	0.003	0.74	0.0	0.04	15.62	0.00	2.578	12.64	1.79	7.4	92.6	0.0	-1.93	1.82	0.54	0.52	0.97	3241	391	1	0	0	0	0	logfile
✔	8V1Y	42892	2025-02-13	2023-11-21	2.7	2.29	—	1.9	0.003	0.52	0.0	0.04	12.81	0.00	2.268	5.27	0.00	1.8	98.2	0.0	1.13	0.79	0.85	3.37	1.9	0.003	0.66	0.0	0.04	16.50	0.01	2.344	8.56	2.11	2.1	97.9	0.0	0.93	0.56	0.77	0.81	3.24	8918	1137	6	0	2	0	0	logfile
✔	8V1N	42886	2025-02-10	2023-11-20	3.0	3.17	1.85	3.5	0.004	0.76	0.0	0.05	19.55	0.00	2.237	14.70	3.21	3.6	96.4	0.0	-3.49	0.38	0.70	3.30	3.6	0.003	0.67	0.0	0.05	20.49	0.00	2.625	8.68	4.49	5.4	93.5	1.2	-2.20	0.45	0.39	0.71	3.18	1440	192	12	0	0	0	0	logfile
✔	8X64	38079	2025-02-10	2023-11-20	3.4	4.16	3.79	4.1	0.006	0.79	1.0	0.05	14.11	0.01	2.290	13.75	0.42	7.5	92.5	0.0	-0.76	0.45	0.61	2.20	4.1	0.003	0.69	0.0	0.04	17.26	0.00	2.638	10.82	4.18	5.5	94.5	0.0	0.18	1.14	0.37	0.57	1.59	2189	263	2	0	1	0	0	logfile
✔	8X63	38078	2025-02-10	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.004	0.76	0.0	0.04	17.21	0.01	2.595	7.89	2.03	7.6	92.4	0.0	-0.28	0.80	0.30	0.48	1.25	2252	270	2	0	1	0	0	logfile
✔	8X5X	38074	2025-02-10	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.75	0.0	0.04	17.43	0.00	2.642	10.53	4.74	4.1	95.9	0.0	1.19	0.80	0.44	0.56	1.05	2105	256	1	0	0	0	0	logfile
✔	8X5Y	38075	2025-02-10	2023-11-20	3.0	3.88	3.52	3.9	0.013	0.90	0.0	0.05	14.80	0.01	2.346	8.21	0.40	7.5	92.5	0.0	-0.78	0.38	0.58	2.00	3.9	0.003	0.76	0.0	0.04	17.17	0.00	2.614	9.07	2.81	6.0	94.0	0.0	0.09	0.29	0.32	0.52	1.22	2292	274	2	0	1	0	0	logfile
✔	8X61	38077	2025-02-11	2023-11-20	3.05	3.26	3.01	3.3	0.004	0.60	0.0	0.04	16.00	0.00	2.218	5.90	0.34	3.2	96.8	0.0	0.61	0.69	0.80	2.83	3.3	0.004	0.62	0.0	0.04	16.29	0.00	2.410	4.34	2.05	2.8	97.2	0.0	1.97	0.91	0.67	0.82	2.91	5737	756	6	0	2	0	0	logfile
✔	8V12	42878	2025-02-12	2023-11-19	3.81	4.38	3.83	4.1	0.002	0.50	0.0	0.04	11.58	0.00	2.196	11.64	2.72	1.8	98.2	0.0	2.07	0.60	0.68	-0.08	4.1	0.003	0.80	0.0	0.05	14.93	0.00	2.448	16.23	3.51	3.0	97.0	0.0	1.65	0.96	0.62	0.77	0.30	7960	979	2	0	2	0	0	logfile
✔	8V0G	42854	2025-02-12	2023-11-17	3.11	3.81	3.34	3.6	0.006	0.95	0.0	0.04	10.81	0.01	2.417	25.65	0.88	4.4	95.5	0.1	-1.87	0.67	0.82	2.89	3.6	0.003	0.65	0.0	0.04	14.88	0.00	2.377	10.77	2.10	1.5	98.5	0.0	2.33	1.36	0.62	0.84	1.81	8106	985	2	0	3	0	0	logfile
✔	8X5H	38069	2025-02-10	2023-11-17	3.47	3.52	3.25	3.7	0.009	0.80	0.0	0.06	14.23	0.00	2.023	16.44	0.00	14.3	85.7	0.0	-5.99	0.31	0.84	4.70	3.7	0.003	0.62	0.0	0.05	15.63	0.00	2.522	5.99	4.23	8.8	91.2	0.0	-5.03	0.44	0.30	0.84	3.68	3258	405	3	0	0	0	0	logfile
✔	8X5E	38067	2025-02-10	2023-11-17	3.61	3.77	3.58	3.7	0.007	1.27	1.0	0.07	14.32	0.00	2.438	11.64	2.53	7.8	92.2	0.0	-1.30	0.51	0.81	2.40	3.7	0.003	0.62	0.0	0.04	15.37	0.00	2.443	4.87	5.70	4.4	95.6	0.0	1.43	1.43	0.51	0.81	2.68	3216	390	2	0	8	0	0	logfile

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