Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X5B	38065	2025-02-12	2023-11-16	2.84	3.12	2.88	3.1	0.014	1.74	10.0	0.11	18.03	0.02	2.248	11.12	1.65	4.1	95.8	0.1	-1.37	0.64	0.84	3.27	3.1	0.003	0.56	0.0	0.04	16.68	0.00	2.392	2.71	1.20	2.4	97.6	0.0	2.05	0.98	0.63	0.85	2.87	6973	786	6	0	28	14	0	logfile
✔	8X51	38058	2025-02-12	2023-11-16	2.92	3.16	2.94	3.2	0.008	1.27	0.0	0.07	18.47	0.01	2.328	1.89	0.00	7.3	92.3	0.3	-3.65	0.56	0.76	3.45	3.2	0.003	0.68	0.0	0.04	20.64	0.00	2.354	5.60	2.58	6.5	93.1	0.3	-0.57	1.56	0.61	0.79	2.77	8095	885	6	42	2	0	0	logfile
✔	8UZB	42838	2025-02-14	2023-11-14	2.63	2.93	2.72	2.9	0.003	0.53	0.0	0.04	20.26	0.00	2.147	5.73	0.00	3.7	96.3	0.0	0.49	0.67	0.78	2.83	2.9	0.005	0.63	0.0	0.04	21.32	0.00	2.462	4.89	2.10	4.1	95.9	0.0	0.56	0.32	0.65	0.79	2.66	10882	910	4	162	0	0	0	logfile
✔	8UZC	42839	2025-02-11	2023-11-14	3.8	4.02	3.72	4.0	0.004	0.71	0.0	0.04	16.35	0.01	1.992	14.20	3.45	9.7	90.0	0.2	-2.81	0.65	0.69	2.14	4.0	0.004	0.68	0.0	0.05	16.72	0.01	2.392	12.30	3.71	12.3	87.7	0.0	-3.02	0.45	0.65	0.70	1.57	6831	443	3	0	0	0	3367	logfile
✔	8UYH	42806	2025-02-11	2023-11-13	2.84	2.98	2.94	3.1	0.006	0.76	0.0	0.04	13.96	0.01	2.074	3.66	1.52	1.1	98.9	0.0	-1.53	0.55	0.80	3.13	3.1	0.003	0.52	0.0	0.04	15.82	0.00	1.941	5.07	2.42	1.8	98.2	0.0	1.50	0.96	0.60	0.83	2.25	6036	745	4	0	5	0	0	logfile
✔	8R4B	18884	2025-02-12	2023-11-13	3.88	2.61	—	2.9	0.003	0.69	0.0	0.04	16.62	0.00	2.206	12.29	0.52	9.5	90.2	0.3	-2.78	0.76	0.69	1.44	2.9	0.004	0.75	0.0	0.04	17.36	0.00	2.422	12.56	3.13	9.0	90.7	0.3	-2.44	1.57	0.77	0.71	1.62	7600	1031	4	0	1	0	0	logfile
✔	8R4C	18885	2025-02-11	2023-11-13	3.55	2.98	3.52	2.9	0.004	0.72	0.0	0.04	18.00	0.01	2.207	11.23	1.16	9.5	90.5	0.0	-2.95	0.64	0.76	1.62	2.9	0.003	0.70	0.0	0.04	18.41	0.01	2.552	10.09	7.91	8.4	91.6	0.0	-2.92	0.22	0.63	0.76	1.63	4027	553	2	0	0	0	0	logfile
✔	8X3K	38038	2025-02-10	2023-11-13	2.98	3.37	3.00	3.4	0.008	0.90	0.0	0.05	13.54	0.01	2.238	8.90	1.34	3.5	96.5	0.0	-2.22	0.52	0.78	1.32	3.4	0.004	0.70	0.0	0.04	15.89	0.00	2.580	6.63	4.03	1.9	98.1	0.0	1.82	0.41	0.52	0.79	1.32	2797	373	2	0	1	0	0	logfile
✔	8UY9	42796	2025-02-11	2023-11-13	3.65	3.80	3.71	3.7	0.004	0.73	2.0	0.05	14.68	0.00	1.921	13.81	0.38	2.8	97.2	0.0	0.72	0.66	0.84	2.06	3.7	0.004	0.66	0.0	0.04	15.60	0.00	1.918	7.56	5.10	2.7	97.3	0.0	1.05	0.91	0.66	0.84	1.46	5982	859	2	0	1	0	0	logfile
✔	8R4D	18886	2025-02-11	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.62	0.0	0.04	16.81	0.00	2.503	10.88	3.57	9.1	90.2	0.7	-2.20	0.40	0.52	0.58	2.25	3573	478	3	0	1	0	0	logfile
✔	8UYi	42807	2025-02-11	2023-11-13	3.13	3.34	3.23	3.4	0.004	0.67	0.0	0.04	12.68	0.00	2.057	4.03	1.08	2.1	97.9	0.0	-0.84	0.52	0.74	3.12	3.4	0.003	0.64	0.0	0.04	15.67	0.00	1.959	8.31	2.77	2.6	97.4	0.0	1.55	1.92	0.66	0.82	2.32	5980	738	4	0	6	0	0	logfile
✔	8UYF	42804	2025-02-11	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.57	0.0	0.04	13.79	0.00	2.481	6.03	1.53	1.8	98.2	0.0	1.67	0.99	0.75	0.86	3.62	6460	801	2	0	0	0	0	logfile
✔	8R4A	18883	2025-02-13	2023-11-13	2.8	2.04	2.70	2.7	0.013	2.16	0.0	0.10	15.07	0.01	2.451	5.51	0.00	6.2	93.8	0.0	-4.27	0.78	0.80	3.91	2.7	0.005	0.84	0.0	0.05	17.14	0.00	2.549	9.76	4.81	4.9	95.1	0.0	-4.32	0.60	0.81	0.86	4.20	9225	1170	9	0	0	0	0	logfile
✔	8R47	18881	2025-02-11	2023-11-13	2.25	2.05	2.13	2.3	0.013	2.04	0.0	0.10	15.67	0.02	2.041	0.82	0.00	0.0	100.0	0.0	-4.59	0.54	0.81	6.28	2.3	0.003	0.68	0.0	0.04	16.30	0.00	2.507	7.33	1.77	3.0	97.0	0.0	-3.99	1.04	0.52	0.82	6.08	3780	498	6	0	0	0	0	logfile
✔	8UXV	42786	2025-02-12	2023-11-11	3.2	3.35	3.12	3.4	0.003	0.53	0.0	0.04	14.02	0.00	2.094	3.18	0.00	2.6	97.4	0.0	0.80	0.72	0.86	2.93	3.4	0.004	0.57	0.0	0.04	15.75	0.00	2.534	2.49	1.99	3.3	96.7	0.0	0.94	0.91	0.72	0.89	2.54	8065	1041	5	0	0	0	0	logfile
✔	8UY0	42791	2025-02-12	2023-11-11	3.2	3.52	3.23	3.7	0.004	0.55	0.0	0.04	13.39	0.00	2.236	4.62	0.11	1.9	98.1	0.0	0.91	0.55	0.74	2.67	3.7	0.003	0.56	0.0	0.04	15.56	0.00	2.414	3.57	1.24	2.1	97.9	0.0	1.54	0.37	0.56	0.77	2.51	8121	1031	6	0	1	0	0	logfile
✔	8R3Z	18878	2025-02-11	2023-11-10	3.4	4.16	3.41	3.9	0.004	0.65	0.0	0.05	17.44	0.00	1.932	14.50	0.29	3.5	96.5	0.0	-0.21	0.83	0.79	1.95	3.9	0.003	0.58	0.0	0.04	17.67	0.00	1.946	11.23	3.00	3.1	96.9	0.0	0.26	0.51	0.82	0.78	1.53	6389	755	3	6	1	0	0	logfile
✔	8R3T	18874	2025-02-11	2023-11-10	3.1	3.18	2.95	3.4	0.011	2.12	6.0	0.11	14.98	0.01	2.582	0.55	5.45	2.0	96.2	1.8	-1.86	0.37	0.73	5.38	3.4	0.004	0.70	0.0	0.05	13.95	0.00	2.515	3.87	2.24	5.8	93.9	0.3	-3.05	1.75	0.38	0.76	4.50	5438	354	6	0	0	0	2804	logfile
✔	8X2M	38017	2025-02-14	2023-11-09	3.31	4.05	3.32	3.5	0.003	0.63	0.0	0.04	16.67	0.00	2.137	9.92	0.51	5.0	95.0	0.0	-1.93	0.80	0.73	1.96	3.6	0.003	0.75	0.0	0.04	16.93	0.00	2.301	10.31	3.20	6.1	93.9	0.0	-1.41	1.31	0.82	0.80	2.31	10545	1306	6	0	0	0	0	logfile
✔	8X2L	38016	2025-02-12	2023-11-09	2.99	2.32	2.96	3.0	0.006	0.80	0.0	0.05	13.83	0.01	2.102	3.36	0.14	2.6	97.4	0.0	-0.31	0.74	0.76	2.93	3.0	0.004	0.69	0.0	0.04	16.11	0.00	2.242	12.22	3.22	3.6	96.4	0.0	0.35	0.67	0.77	0.81	2.70	7099	885	6	0	9	1	0	logfile

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