Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X2L	38016	2025-02-12	2023-11-09	2.99	2.32	2.96	3.0	0.006	0.80	0.0	0.05	13.83	0.01	2.102	3.36	0.14	2.6	97.4	0.0	-0.31	0.74	0.76	2.93	3.0	0.004	0.69	0.0	0.04	16.11	0.00	2.242	12.22	3.22	3.6	96.4	0.0	0.35	0.67	0.77	0.81	2.70	7099	885	6	0	9	1	0	logfile
✔	8R34	18860	2025-02-12	2023-11-08	2.62	2.82	2.62	2.9	0.004	0.65	0.0	0.04	19.66	0.00	2.167	7.50	2.41	2.3	97.7	0.0	0.34	0.62	0.83	2.93	2.9	0.003	0.57	0.0	0.04	18.56	0.00	2.289	5.50	1.65	2.2	97.8	0.0	1.84	0.85	0.61	0.83	2.88	7762	970	6	0	14	62	0	logfile
✔	8R35	18861	2025-02-12	2023-11-08	3.12	3.46	3.18	3.4	0.003	0.55	0.0	0.04	16.59	0.00	2.214	6.87	0.90	2.4	97.6	0.0	1.44	0.68	0.87	1.80	3.4	0.003	0.57	0.0	0.04	16.78	0.00	2.567	5.85	3.23	2.4	97.6	0.0	2.20	0.26	0.66	0.87	1.80	7150	953	2	0	0	0	0	logfile
✔	8R33	18859	2025-02-12	2023-11-08	2.29	2.45	2.30	2.4	0.003	0.56	0.0	0.04	18.61	0.00	2.171	8.27	2.39	2.0	98.0	0.0	1.52	0.67	0.86	4.80	2.4	0.003	0.55	0.0	0.04	17.25	0.00	2.577	6.53	0.88	2.0	98.0	0.0	2.61	0.28	0.66	0.85	4.20	8066	978	6	0	8	328	0	logfile
✔	8X1N	37997	2025-02-11	2023-11-08	3.31	3.46	3.37	3.5	0.003	0.59	0.0	0.04	16.86	0.00	2.251	2.85	0.00	2.4	97.6	0.0	2.01	0.72	0.84	2.46	3.5	0.003	0.53	0.0	0.04	16.37	0.00	2.580	2.43	2.72	3.6	96.4	0.0	2.23	0.29	0.69	0.83	1.44	4763	591	3	0	8	0	0	logfile
✔	8X1i	37996	2025-02-11	2023-11-07	4.0	4.14	2.43	4.1	0.012	1.87	1.0	0.10	15.72	0.01	1.891	0.00	2.93	5.2	94.8	0.0	-2.05	0.41	0.68	—	4.1	0.003	0.68	0.0	0.04	15.07	0.00	1.809	5.93	0.98	5.7	94.3	0.0	-0.18	1.92	0.43	0.77	—	5722	369	2	0	2	0	2840	logfile
✔	8X1B	37989	2025-02-11	2023-11-06	2.59	2.29	2.63	2.1	0.003	0.50	0.0	0.04	16.59	0.00	2.236	5.35	1.48	3.4	96.6	0.0	0.52	0.84	0.84	3.42	2.1	0.003	0.53	0.0	0.05	16.76	0.00	2.602	5.45	0.74	3.4	96.6	0.0	0.58	0.90	0.83	0.83	3.14	5106	658	1	0	0	0	0	logfile
✔	8UWL	42676	2025-02-13	2023-11-06	2.8	2.30	—	2.9	0.013	1.69	10.0	0.12	12.38	0.01	2.079	5.47	1.43	3.0	97.0	0.0	1.81	0.83	0.83	4.24	2.9	0.003	0.62	0.0	0.04	16.35	0.00	2.564	2.29	2.41	2.5	97.5	0.0	1.59	1.05	0.83	0.85	3.72	8626	1123	6	0	1	0	0	logfile
✔	8UWC	42661	2025-02-12	2023-11-06	2.27	2.89	2.21	2.7	0.008	0.88	0.0	0.05	15.70	0.01	1.906	13.81	1.67	5.4	94.6	0.0	-1.61	0.72	0.69	2.89	2.7	0.003	0.65	0.0	0.05	16.42	0.00	2.352	7.29	2.15	3.1	96.9	0.0	-0.22	0.82	0.70	0.72	2.97	7767	494	2	0	1	97	3821	logfile
✔	8X16	37985	2025-02-13	2023-11-06	3.29	3.58	3.36	3.7	0.005	0.53	0.0	0.04	8.10	0.00	2.203	8.34	0.32	2.0	97.9	0.1	-1.18	0.56	0.60	1.26	3.6	0.003	0.69	0.0	0.04	14.73	0.00	2.501	10.35	2.99	3.4	96.6	0.0	0.57	1.16	0.63	0.79	1.57	8751	1126	6	0	1	0	0	logfile
✔	8X0W	37983	2025-02-12	2023-11-06	3.1	4.21	3.15	3.7	0.003	0.60	0.0	0.04	21.59	0.00	2.229	8.75	0.51	5.4	94.6	0.0	1.39	0.67	0.86	1.45	3.7	0.002	0.68	0.0	0.04	16.39	0.00	2.456	6.13	1.77	4.5	95.5	0.0	1.52	0.31	0.67	0.87	1.67	7368	935	7	0	8	0	0	logfile
✔	8X17	37986	2025-02-13	2023-11-06	3.19	3.42	3.20	3.4	0.005	0.56	0.0	0.04	12.62	0.00	2.053	3.79	0.32	1.6	98.4	0.0	-0.96	0.62	0.78	2.23	3.4	0.003	0.56	0.0	0.04	15.30	0.00	2.523	6.09	1.92	2.7	97.3	0.0	1.02	1.05	0.62	0.84	2.37	8753	1127	6	0	1	0	0	logfile
✔	8UVi	42621	2025-02-12	2023-11-03	2.53	2.73	2.54	2.8	0.004	0.75	4.0	0.05	14.60	0.01	2.093	9.69	0.72	2.1	97.9	0.0	1.41	0.60	0.80	2.95	2.8	0.003	0.66	0.0	0.04	14.73	0.01	2.264	10.45	2.99	1.4	98.6	0.0	2.31	5.05	0.62	0.84	2.63	8212	994	4	0	22	0	0	logfile
✔	8X06	37970	2025-02-12	2023-11-03	3.24	3.88	3.24	3.6	0.002	0.58	0.0	0.04	18.50	0.00	2.261	7.83	0.25	3.8	96.2	0.0	-0.94	0.77	0.76	1.37	3.6	0.003	0.61	0.0	0.04	18.31	0.00	2.531	7.40	3.95	7.5	92.5	0.0	-1.58	1.14	0.79	0.84	2.03	7053	869	4	0	0	0	0	logfile
✔	8UUZ	42602	2025-02-11	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.8	0.004	0.86	0.0	0.05	16.44	0.00	2.571	27.43	4.78	5.6	94.4	0.0	-2.39	1.28	0.76	0.59	1.07	2258	300	2	0	0	0	0	logfile
✔	8UVH	42620	2025-02-12	2023-11-02	2.33	2.52	2.23	2.7	0.004	0.64	0.0	0.04	11.90	0.01	2.255	9.55	0.26	1.1	98.9	0.0	2.35	0.56	0.76	3.21	2.7	0.003	0.60	0.0	0.04	14.72	0.01	2.581	9.69	0.51	1.2	98.8	0.0	2.43	0.38	0.55	0.78	3.00	7158	918	2	0	0	0	0	logfile
✔	8UVE	42617	2025-02-12	2023-11-02	2.6	3.11	2.70	3.0	0.004	0.62	0.0	0.04	14.48	0.01	2.230	9.16	0.00	1.5	98.5	0.0	2.23	0.58	0.83	2.45	3.0	0.003	0.58	0.0	0.04	14.55	0.01	2.251	8.01	1.65	1.5	98.5	0.0	2.71	0.35	0.53	0.80	2.30	8373	1010	4	0	22	0	0	logfile
✔	8UVF	42618	2025-02-12	2023-11-02	2.17	2.37	2.19	2.5	0.005	0.68	2.0	0.05	15.06	0.01	2.198	8.72	0.47	0.8	99.2	0.0	2.18	0.65	0.84	3.77	2.5	0.003	0.57	0.0	0.04	15.02	0.01	2.246	7.30	1.40	0.8	99.2	0.0	2.35	0.95	0.64	0.86	3.73	8520	1026	4	0	22	0	0	logfile
✔	8WZX	37963	2025-02-12	2023-11-02	2.88	2.79	2.64	3.0	0.009	0.97	0.0	0.06	10.36	0.00	2.604	10.76	0.00	2.0	98.0	0.0	-4.13	0.54	0.86	6.58	3.0	0.006	1.11	1.0	0.05	15.29	0.01	2.408	11.11	2.43	3.2	96.7	0.1	-4.36	0.41	0.53	0.89	5.70	7300	1020	20	0	0	0	0	logfile
✔	8WZE	37950	2025-02-11	2023-11-02	3.32	3.49	3.24	3.5	0.005	0.75	0.0	0.05	15.54	0.01	2.186	5.72	0.78	4.0	95.8	0.2	-2.32	0.44	0.73	2.69	3.5	0.003	0.57	0.0	0.04	16.34	0.00	2.614	5.72	3.63	5.2	94.8	0.0	-1.05	0.42	0.57	0.82	2.64	3400	435	3	0	0	0	0	logfile

• ← previous
• Page 46 of 255
• next →