Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UVH	42620	2025-02-12	2023-11-02	2.33	2.52	2.23	2.7	0.004	0.64	0.0	0.04	11.90	0.01	2.255	9.55	0.26	1.1	98.9	0.0	2.35	0.56	0.76	3.21	2.7	0.003	0.60	0.0	0.04	14.72	0.01	2.581	9.69	0.51	1.2	98.8	0.0	2.43	0.38	0.55	0.78	3.00	7158	918	2	0	0	0	0	logfile
✔	8UUK	42588	2025-02-14	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.003	0.63	0.0	0.04	16.22	0.00	2.539	10.46	2.39	5.0	94.9	0.2	1.30	0.32	0.59	0.83	3.24	10242	1226	4	0	30	0	0	logfile
✔	8WZ4	37946	2025-02-11	2023-11-01	3.13	3.33	3.13	3.4	0.010	0.89	0.0	0.06	13.98	0.00	2.114	3.62	0.26	8.6	91.4	0.0	-4.05	0.68	0.79	3.83	3.4	0.004	0.64	0.0	0.04	16.66	0.00	2.481	4.63	4.90	4.9	95.1	0.0	-0.32	1.75	0.69	0.84	3.20	3441	439	3	0	0	0	0	logfile
✔	8WZ2	37944	2025-02-13	2023-11-01	2.73	3.66	2.90	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.3	0.003	0.77	0.0	0.04	15.56	0.00	2.451	9.00	2.40	2.5	97.5	0.0	0.67	4.13	0.70	0.85	2.80	9355	1202	6	0	0	0	0	logfile
✔	8UUE	42580	2025-02-13	2023-11-01	3.96	4.16	3.95	4.1	0.011	1.34	3.0	0.05	18.95	0.01	2.131	16.88	1.45	10.8	88.3	1.0	-2.50	0.79	0.81	1.60	4.1	0.004	0.74	0.0	0.04	18.85	0.01	2.433	9.49	5.27	10.4	88.7	0.9	-1.82	0.95	0.79	0.81	1.51	8984	1150	4	0	0	0	0	logfile
✔	8WYS	37937	2025-02-11	2023-10-31	3.41	3.65	3.43	3.6	0.005	0.92	0.0	0.06	17.49	0.01	2.025	6.74	0.98	7.0	93.0	0.0	-3.17	0.56	0.77	0.84	3.6	0.004	0.67	0.0	0.05	17.41	0.00	2.236	10.67	4.06	8.1	91.9	0.0	-1.93	0.93	0.55	0.80	1.51	6340	805	8	0	6	0	0	logfile
✔	8WYX	37940	2025-02-13	2023-10-31	3.5	3.89	3.49	3.4	0.005	0.57	0.0	0.04	13.61	0.00	2.029	10.00	0.20	3.2	96.8	0.0	-0.06	0.75	0.62	0.72	3.6	0.004	0.77	1.0	0.04	16.57	0.00	2.026	14.78	4.15	4.6	95.4	0.0	-0.55	1.56	0.79	0.68	1.11	8809	1070	2	0	1	0	0	logfile
✔	8UTR	42547	2025-02-14	2023-10-31	3.3	2.47	3.29	3.4	0.004	0.78	0.0	0.05	18.17	0.01	1.777	3.27	0.66	4.2	95.6	0.2	0.03	0.59	0.84	3.09	3.4	0.003	0.63	0.0	0.04	17.19	0.00	1.977	5.24	1.80	3.8	96.2	0.0	0.73	0.47	0.60	0.85	2.77	9792	1230	7	1	4	0	0	logfile
✔	8UTS	42548	2025-02-14	2023-10-31	2.7	2.00	2.74	3.3	0.005	0.84	0.0	0.05	18.95	0.01	1.992	5.05	2.56	5.4	93.8	0.8	-0.21	0.62	0.77	2.51	3.2	0.005	0.72	0.0	0.05	17.76	0.01	1.896	9.32	3.50	5.7	94.2	0.1	-0.12	0.73	0.63	0.84	2.13	9748	1227	6	1	3	0	0	logfile
✔	8UTW	42552	2025-02-14	2023-10-31	3.4	2.15	3.43	4.0	0.005	0.87	1.0	0.05	19.46	0.01	1.938	6.12	1.89	6.5	93.3	0.2	-0.80	0.51	0.74	1.87	4.0	0.003	0.64	0.0	0.04	17.88	0.01	1.865	6.12	2.92	6.0	93.9	0.1	0.53	0.42	0.52	0.74	1.93	9787	1227	6	1	3	0	0	logfile
✔	8UTF	42539	2025-02-14	2023-10-31	2.73	2.99	2.86	2.9	0.003	0.45	0.0	0.04	16.15	0.00	2.222	3.02	0.00	1.5	98.5	0.0	0.28	0.69	0.81	3.67	2.9	0.003	0.55	0.0	0.04	16.06	0.00	2.596	3.48	1.68	1.5	98.5	0.0	1.52	1.47	0.77	0.86	2.92	9827	1248	15	0	9	134	0	logfile
✔	8WYi	37929	2025-02-11	2023-10-31	3.9	4.16	3.88	4.1	0.004	1.06	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.004	0.86	0.0	0.04	18.75	0.00	2.358	11.01	7.27	11.4	87.7	0.9	-0.30	1.24	0.61	0.76	0.84	4659	589	8	0	0	0	0	logfile
✔	8WY0	37914	2025-02-11	2023-10-30	3.8	4.17	3.79	4.1	0.003	0.71	0.0	0.04	17.42	0.00	2.142	14.51	1.16	7.9	92.1	0.0	-1.58	0.50	0.67	1.59	4.1	0.003	0.85	0.0	0.04	17.85	0.00	2.524	10.03	5.60	6.7	93.3	0.0	-0.69	0.67	0.61	0.76	1.26	4656	587	9	0	1	0	0	logfile
✔	8WXE	37904	2025-02-11	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.86	0.0	0.04	18.57	0.00	2.490	12.32	6.92	5.2	94.8	0.0	-0.23	0.93	0.56	0.73	—	4388	548	9	0	1	0	0	logfile
✔	8WX3	37899	2025-02-12	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.14	0.00	2.576	5.79	2.94	3.5	96.3	0.2	1.41	1.81	0.56	0.84	2.70	7498	974	2	0	0	0	0	logfile
✔	8WX1	37897	2025-02-11	2023-10-27	3.64	3.87	3.67	4.0	0.003	0.74	0.0	0.04	13.80	0.00	2.297	9.47	0.00	4.7	94.9	0.4	0.07	0.51	0.72	0.89	3.9	0.003	0.71	0.0	0.04	16.73	0.01	2.479	11.75	2.87	6.3	93.7	0.0	2.36	0.69	0.54	0.76	1.54	3926	500	1	0	0	0	0	logfile
✔	8WX4	37900	2025-02-12	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	2.031	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.003	0.57	0.0	0.04	15.21	0.00	2.576	4.53	1.79	2.8	97.2	0.0	1.39	1.31	0.56	0.82	2.55	7512	976	6	0	0	0	0	logfile
✔	8WX2	37898	2025-02-11	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.033	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.003	0.85	0.0	0.05	16.69	0.01	2.549	12.31	3.56	7.7	92.3	0.0	0.82	0.64	0.59	0.74	0.75	6800	880	2	0	0	0	0	logfile
✔	8WX5	37901	2025-02-11	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.003	0.75	0.0	0.04	16.93	0.00	2.533	13.33	2.99	6.2	93.8	0.0	0.74	1.00	0.51	0.80	0.74	3857	504	2	0	0	0	0	logfile
✔	8URQ	42497	2025-02-13	2023-10-26	3.3	3.57	3.32	3.6	0.017	1.25	1.0	0.06	21.28	0.01	1.769	18.16	4.61	10.8	88.9	0.3	-3.76	0.71	0.71	1.02	3.6	0.004	0.70	0.0	0.04	20.82	0.00	1.880	9.23	4.16	10.3	89.7	0.0	-2.89	0.52	0.71	0.73	1.10	8569	993	6	31	1	0	0	logfile

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