Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8URQ	42497	2025-02-13	2023-10-26	3.3	3.57	3.32	3.6	0.017	1.25	1.0	0.06	21.28	0.01	1.769	18.16	4.61	10.8	88.9	0.3	-3.76	0.71	0.71	1.02	3.6	0.004	0.70	0.0	0.04	20.82	0.00	1.880	9.23	4.16	10.3	89.7	0.0	-2.89	0.52	0.71	0.73	1.10	8569	993	6	31	1	0	0	logfile
✔	8URU	42501	2025-02-13	2023-10-26	3.7	3.90	3.70	3.9	0.005	0.98	1.0	0.05	21.44	0.01	2.058	21.18	3.21	10.9	88.1	0.9	-2.97	0.70	0.74	1.42	3.9	0.003	0.76	0.0	0.04	21.15	0.00	2.010	10.65	4.65	8.3	91.0	0.6	-1.86	0.46	0.70	0.74	1.29	8895	1001	6	43	1	0	0	logfile
✔	8WWN	37894	2025-02-13	2023-10-25	2.65	2.83	2.75	2.8	0.002	0.44	0.0	0.04	9.19	0.00	2.180	5.02	0.62	1.2	98.8	0.0	0.87	0.71	0.83	4.98	2.8	0.003	0.53	0.0	0.04	14.00	0.00	2.522	5.41	3.10	1.8	98.2	0.0	1.44	1.57	0.70	0.84	3.74	8960	1160	6	0	0	0	0	logfile
✔	8WWL	37892	2025-02-13	2023-10-25	2.78	2.95	2.86	2.9	0.002	0.42	0.0	0.04	8.90	0.00	2.135	5.97	0.83	1.6	98.4	0.0	0.49	0.67	0.81	4.70	2.9	0.004	0.58	0.0	0.04	13.61	0.00	2.556	5.97	2.48	2.0	98.0	0.0	1.13	0.45	0.67	0.81	3.29	8964	1160	6	0	0	0	0	logfile
✔	8WWi	37889	2025-02-13	2023-10-25	3.43	3.62	3.55	3.6	0.002	0.41	0.0	0.04	8.18	0.00	2.085	7.35	0.95	1.7	98.3	0.0	0.41	0.60	0.67	1.27	3.6	0.003	0.72	0.0	0.04	14.25	0.00	2.306	11.78	3.38	2.7	97.3	0.0	0.63	2.31	0.61	0.69	0.56	8803	1143	5	0	0	0	0	logfile
✔	8UR6	42484	2025-02-12	2023-10-25	3.03	3.72	3.10	3.5	0.007	0.76	0.0	0.05	13.54	0.01	2.219	4.52	0.00	1.9	98.1	0.0	-0.07	0.83	0.84	2.50	3.5	0.003	0.50	0.0	0.04	14.69	0.00	2.489	5.60	0.95	1.7	98.3	0.0	1.08	1.21	0.83	0.85	2.26	7540	930	2	0	0	0	0	logfile
✔	8UR5	42482	2025-02-11	2023-10-25	3.7	3.90	2.45	4.0	0.011	1.45	0.0	0.09	9.30	0.01	2.011	6.45	1.71	4.3	95.2	0.4	-0.71	0.66	0.72	3.62	3.9	0.003	0.72	0.0	0.05	12.69	0.00	2.608	5.35	3.13	3.6	95.5	0.9	-0.70	1.63	0.69	0.79	3.14	4989	696	6	0	12	0	0	logfile
✔	8UR3	42480	2025-02-13	2023-10-25	2.61	3.41	2.64	3.1	0.003	0.51	0.0	0.04	13.47	0.00	2.253	4.15	0.00	2.7	97.3	0.0	-0.63	0.86	0.85	3.65	3.0	0.002	0.49	0.0	0.04	15.10	0.00	2.550	5.56	0.77	2.7	97.3	0.0	1.03	0.55	0.87	0.86	3.40	9376	1158	2	0	0	0	0	logfile
✔	8UR7	42486	2025-02-11	2023-10-25	3.9	4.14	3.48	4.1	0.009	1.28	0.0	0.07	9.35	0.00	2.021	7.52	0.66	4.7	95.3	0.0	-0.32	0.73	0.74	2.83	4.1	0.003	0.63	0.0	0.04	13.07	0.00	2.627	6.40	1.55	2.2	97.4	0.4	0.30	1.59	0.77	0.79	2.77	5772	789	6	0	9	0	0	logfile
✔	8QYC	18750	2025-02-12	2023-10-25	2.75	3.04	2.85	3.1	0.002	0.44	0.0	0.04	11.07	0.00	2.161	5.15	1.29	2.6	97.4	0.0	1.17	0.63	0.83	4.58	3.0	0.004	0.55	0.0	0.04	15.58	0.00	2.496	4.46	1.93	2.9	97.1	0.0	0.97	0.91	0.59	0.81	3.96	7198	893	2	0	1	0	0	logfile
✔	8WWJ	37890	2025-02-13	2023-10-25	3.03	3.30	3.24	3.2	0.003	0.43	0.0	0.04	8.31	0.00	2.118	5.67	0.63	1.8	98.2	0.0	1.11	0.66	0.79	4.07	3.2	0.004	0.60	0.0	0.04	14.17	0.00	2.518	6.24	2.00	2.6	97.4	0.0	1.34	0.66	0.67	0.80	3.35	8821	1143	5	0	0	0	0	logfile
✔	8QY7	18747	2025-02-12	2023-10-25	2.66	2.97	2.74	2.9	0.018	1.71	1.0	0.05	14.57	0.01	1.791	15.44	0.00	3.3	96.7	0.0	0.62	0.72	0.85	4.44	2.9	0.003	0.56	0.0	0.04	17.60	0.01	2.580	5.45	3.08	3.2	96.8	0.0	1.14	0.91	0.62	0.84	4.01	7167	893	1	0	0	0	0	logfile
✔	8URE	42491	2025-02-13	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.7	0.009	0.83	0.0	0.03	5.57	0.01	2.468	3.69	0.00	5.7	94.3	0.0	-1.13	0.68	0.82	0.83	—	8896	1792	8	0	0	0	0	logfile
✔	8WWM	37893	2025-02-13	2023-10-25	2.81	3.07	2.97	3.0	0.004	0.48	0.0	0.04	9.44	0.00	2.218	5.91	0.93	1.7	98.3	0.0	0.54	0.64	0.80	4.16	3.0	0.003	0.59	0.0	0.04	14.33	0.00	2.584	7.27	2.79	2.0	98.0	0.0	0.97	1.59	0.61	0.77	3.69	8963	1160	6	0	0	0	0	logfile
✔	8WWK	37891	2025-02-13	2023-10-25	2.61	2.77	2.69	2.7	0.002	0.39	0.0	0.04	8.41	0.00	2.205	4.78	0.72	0.8	99.2	0.0	1.11	0.70	0.83	4.70	2.7	0.003	0.54	0.0	0.04	14.11	0.00	2.537	5.68	2.68	2.2	97.8	0.0	1.37	0.44	0.70	0.84	3.78	8967	1160	6	0	0	0	0	logfile
✔	8WWH	37888	2025-02-13	2023-10-25	2.84	3.06	3.01	3.0	0.003	0.42	0.0	0.04	8.13	0.00	2.156	4.75	0.63	1.8	98.2	0.0	0.92	0.64	0.81	3.95	3.0	0.003	0.53	0.0	0.04	13.90	0.00	2.508	6.13	1.79	1.8	98.2	0.0	1.67	0.52	0.62	0.80	3.10	8821	1143	5	0	0	0	0	logfile
✔	8WW2	37881	2025-02-12	2023-10-24	2.79	3.00	2.84	3.1	0.004	0.71	0.0	0.05	13.76	0.00	1.809	4.15	0.00	3.5	96.5	0.0	0.09	0.66	0.80	2.96	3.1	0.002	0.52	0.0	0.04	15.76	0.00	2.597	2.34	0.87	2.2	97.8	0.0	1.45	0.31	0.64	0.81	2.39	7792	1020	6	0	3	2	0	logfile
✔	8QXA	18716	2025-02-11	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.005	0.84	0.0	0.04	14.48	0.00	2.551	18.46	0.00	10.1	89.9	0.0	-4.38	1.41	0.48	0.76	—	3696	540	12	0	0	0	0	logfile
✔	8QXB	18717	2025-02-11	2023-10-24	3.86	3.89	3.45	4.3	0.014	2.28	0.0	0.11	18.19	0.01	2.508	1.77	0.00	2.3	97.7	0.0	-3.90	0.53	0.71	2.65	4.2	0.004	0.87	0.0	0.04	18.50	0.00	2.609	8.30	4.41	4.5	95.5	0.0	-4.74	3.43	0.53	0.77	2.40	5544	810	18	0	0	0	0	logfile
✔	8QX9	18715	2025-02-11	2023-10-24	3.76	3.94	3.62	4.3	0.014	2.17	0.0	0.11	18.79	0.01	2.496	2.80	0.00	2.3	97.7	0.0	-4.75	0.50	0.70	3.13	4.3	0.004	0.89	0.0	0.04	20.18	0.00	2.559	15.80	2.87	3.1	96.9	0.0	-4.78	2.16	0.48	0.75	5.06	3696	540	12	0	0	0	0	logfile

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