Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WVV	37873	2025-02-11	2023-10-24	3.35	2.72	3.57	3.5	0.007	1.26	13.0	0.08	17.09	0.01	1.693	25.67	1.28	7.7	92.3	0.0	-2.78	0.74	0.74	0.66	3.5	0.003	0.71	0.0	0.04	17.59	0.00	2.542	14.62	3.99	5.1	94.9	0.0	-1.63	1.04	0.76	0.79	1.05	5596	718	1	0	0	0	0	logfile
✔	8WVU	37869	2025-02-13	2023-10-24	3.61	2.50	—	2.3	0.012	1.32	3.0	0.06	8.44	0.01	1.989	17.55	2.68	6.0	94.0	0.0	-1.23	0.71	0.62	2.88	2.2	0.003	0.68	0.0	0.04	14.36	0.01	2.533	6.07	2.55	5.3	94.7	0.0	-1.02	1.85	0.75	0.74	2.34	7427	972	3	0	0	0	0	logfile
✔	8QXA	18716	2025-02-11	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.005	0.84	0.0	0.04	14.48	0.00	2.551	18.46	0.00	10.1	89.9	0.0	-4.38	1.41	0.48	0.76	—	3696	540	12	0	0	0	0	logfile
✔	8WW2	37881	2025-02-12	2023-10-24	2.79	3.00	2.84	3.1	0.004	0.71	0.0	0.05	13.76	0.00	1.809	4.15	0.00	3.5	96.5	0.0	0.09	0.66	0.80	2.96	3.1	0.002	0.52	0.0	0.04	15.76	0.00	2.597	2.34	0.87	2.2	97.8	0.0	1.45	0.31	0.64	0.81	2.39	7792	1020	6	0	3	2	0	logfile
✔	8UQK	42472	2025-02-12	2023-10-23	4.61	6.61	4.59	5.7	0.003	0.86	0.0	0.04	13.61	0.01	2.184	21.41	0.00	6.5	93.4	0.1	-2.07	0.86	0.72	—	5.7	0.003	0.77	0.0	0.04	14.24	0.01	2.480	15.22	0.00	8.4	91.4	0.2	-2.46	2.65	0.85	0.67	—	7318	962	2	0	0	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8UQi	42469	2025-02-12	2023-10-23	4.5	7.64	4.73	6.8	0.003	0.84	0.0	0.04	13.62	0.01	2.118	24.94	0.13	7.6	92.4	0.0	-1.83	0.90	0.79	—	6.9	0.004	0.95	0.0	0.05	14.18	0.01	2.235	20.86	0.00	5.3	93.8	0.8	-0.43	3.91	0.85	0.63	—	7318	962	2	0	0	0	0	logfile
✔	8WV4	37864	2025-02-12	2023-10-23	3.3	3.25	3.29	3.3	0.002	0.49	0.0	0.04	14.13	0.00	1.938	5.08	3.33	1.0	99.0	0.0	-2.63	0.74	0.84	4.40	3.3	0.005	0.60	0.0	0.05	15.11	0.00	2.255	6.63	1.78	2.4	97.6	0.0	-1.09	1.17	0.75	0.87	4.02	8170	1030	10	0	10	0	0	logfile
✔	8UPH	42448	2025-02-12	2023-10-22	4.13	4.91	4.16	4.4	0.004	0.71	0.0	0.04	14.18	0.02	2.236	13.34	0.12	2.3	97.6	0.1	-0.18	0.89	0.85	—	4.4	0.005	0.74	0.0	0.04	14.45	0.01	2.490	12.91	0.00	3.4	96.6	0.0	-0.42	0.88	0.90	0.87	—	8121	1054	4	0	2	0	0	logfile
✔	8WUA	37852	2025-02-11	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.81	0.00	2.566	9.50	3.45	6.1	93.9	0.0	0.42	1.45	0.54	0.69	1.10	5494	675	1	0	0	0	0	logfile
✔	8UP1	42442	2025-02-12	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.006	0.83	0.0	0.04	5.82	0.00	2.030	6.29	0.00	8.2	91.5	0.3	0.10	2.24	0.82	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	8UNY	42421	2025-02-11	2023-10-19	3.6	4.06	3.81	4.0	0.006	0.97	0.0	0.06	14.64	0.01	2.255	7.64	0.00	1.7	98.3	0.0	1.32	0.63	0.80	2.56	4.0	0.002	0.54	0.0	0.04	14.51	0.00	2.507	4.02	2.09	1.1	98.9	0.0	1.58	0.97	0.65	0.81	2.62	6546	912	6	0	2	0	0	logfile
✔	8UNX	42420	2025-02-11	2023-10-19	3.6	3.87	3.64	3.9	0.006	0.96	0.0	0.06	13.81	0.01	2.177	5.50	0.00	2.3	97.7	0.0	1.34	0.63	0.82	2.78	3.9	0.002	0.53	0.0	0.04	14.77	0.00	2.505	3.38	1.34	1.2	98.8	0.0	1.65	0.41	0.65	0.84	2.17	6688	923	6	0	2	0	0	logfile
✔	8Uo2	42425	2025-02-11	2023-10-19	3.6	4.02	3.83	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.47	0.0	0.04	14.61	0.00	2.502	3.19	2.20	1.5	98.5	0.0	1.96	0.93	0.65	0.81	2.99	6504	956	6	0	2	0	0	logfile
✔	8UNT	42416	2025-02-11	2023-10-19	3.4	3.76	3.55	3.7	0.005	0.81	0.0	0.05	14.50	0.00	2.232	5.13	0.32	1.4	98.6	0.0	1.29	0.64	0.84	2.66	3.7	0.002	0.50	0.0	0.04	15.18	0.00	2.511	2.72	2.75	1.4	98.6	0.0	1.54	0.36	0.66	0.86	2.37	6712	913	6	0	2	1	0	logfile
✔	8Uo4	42427	2025-02-11	2023-10-19	4.0	4.28	3.99	4.2	0.004	0.72	0.0	0.04	12.00	0.00	2.322	5.46	0.00	3.2	96.8	0.0	-0.04	0.69	0.80	—	4.2	0.007	1.02	1.0	0.04	13.54	0.00	2.359	4.25	3.35	3.1	96.9	0.0	0.58	0.95	0.69	0.80	—	5702	910	6	0	3	0	0	logfile
✔	8Uo3	42426	2025-02-11	2023-10-19	3.5	3.84	3.61	3.8	0.006	0.87	0.0	0.06	14.93	0.01	2.246	6.81	0.20	3.0	97.0	0.0	0.16	0.67	0.84	2.66	3.8	0.002	0.51	0.0	0.04	14.34	0.00	2.025	3.61	1.78	2.1	97.9	0.0	0.94	0.37	0.67	0.83	2.09	6650	977	6	0	3	0	0	logfile
✘	8UNS	42415	2025-02-11	2023-10-19	3.4	3.73	3.46	3.7	0.004	0.77	0.0	0.05	14.48	0.00	2.332	3.61	0.00	2.1	97.9	0.0	1.05	0.65	0.86	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6683	916	6	0	2	1	0	logfile
✔	8WTM	37836	2025-02-14	2023-10-19	2.65	2.81	2.67	2.8	0.008	0.92	0.0	0.06	13.62	0.01	2.034	2.91	0.19	7.6	92.4	0.0	-4.76	0.62	0.87	3.90	2.8	0.003	0.64	0.0	0.04	15.30	0.00	2.553	4.59	2.27	6.0	94.0	0.0	1.08	0.44	0.62	0.88	3.34	9680	1228	3	0	2	0	0	logfile

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