Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WTP	37839	2025-02-14	2023-10-19	2.82	3.23	2.99	3.2	0.009	1.03	0.0	0.06	13.83	0.01	2.283	5.68	0.00	8.4	91.6	0.0	-5.67	0.59	0.80	3.61	3.2	0.005	0.72	0.0	0.05	16.03	0.00	2.498	6.86	2.08	7.4	92.6	0.0	-1.19	0.44	0.49	0.75	3.20	9650	1228	2	0	0	0	0	logfile
✘	8Uo1	42424	2025-02-12	2023-10-19	3.6	3.92	3.71	3.9	0.006	0.92	0.0	0.06	13.48	0.00	2.233	5.01	0.18	2.1	97.9	0.0	0.78	0.65	0.83	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6915	1006	6	0	3	0	0	logfile
✔	8UNW	42419	2025-02-11	2023-10-19	3.4	3.74	3.49	3.7	0.005	0.92	0.0	0.06	15.25	0.00	2.214	4.77	0.16	1.7	98.3	0.0	0.86	0.63	0.84	3.25	3.7	0.003	0.54	0.0	0.04	15.46	0.00	2.508	2.97	3.40	1.7	98.3	0.0	1.29	0.34	0.64	0.86	2.40	6647	900	6	0	2	1	0	logfile
✔	8UNU	42417	2025-02-11	2023-10-19	3.5	3.84	3.62	3.8	0.005	0.83	0.0	0.05	14.14	0.00	2.227	6.74	0.50	1.5	98.5	0.0	1.67	0.63	0.83	2.91	3.8	0.003	0.52	0.0	0.04	15.14	0.00	2.436	2.97	2.18	1.7	98.3	0.0	1.71	0.39	0.64	0.84	2.55	6514	890	6	0	2	0	0	logfile
✔	8UNR	42414	2025-02-11	2023-10-19	3.4	3.68	3.45	3.7	0.005	0.79	0.0	0.05	13.75	0.00	1.950	4.40	0.00	2.3	97.7	0.0	0.99	0.66	0.86	3.46	3.7	0.002	0.49	0.0	0.04	15.08	0.00	2.479	2.83	2.68	2.0	98.0	0.0	1.56	0.94	0.65	0.87	2.60	6670	919	6	0	2	2	0	logfile
✔	8UNQ	42413	2025-02-11	2023-10-19	3.3	3.68	3.44	3.7	0.004	0.77	0.0	0.05	13.49	0.00	2.218	3.68	0.33	1.4	98.6	0.0	1.09	0.61	0.83	2.97	3.7	0.002	0.49	0.0	0.04	14.71	0.00	2.477	2.74	0.99	1.8	98.2	0.0	1.55	0.93	0.65	0.86	2.86	6687	915	6	0	2	1	0	logfile
✔	8UNo	42411	2025-02-11	2023-10-19	3.3	3.74	3.50	3.7	0.005	0.67	0.0	0.04	13.45	0.00	2.236	5.25	0.17	2.1	97.9	0.0	1.15	0.59	0.82	3.67	3.7	0.002	0.54	0.0	0.04	14.76	0.00	2.484	3.32	1.04	1.6	98.4	0.0	1.20	0.95	0.64	0.86	3.53	6489	894	6	0	2	0	0	logfile
✔	8WTN	37837	2025-02-14	2023-10-19	2.95	3.11	2.91	3.1	0.006	1.15	0.0	0.05	14.11	0.01	2.256	5.10	0.00	9.0	91.0	0.0	-5.66	0.65	0.83	3.57	3.1	0.003	0.66	0.0	0.04	15.74	0.00	1.715	5.66	2.08	8.7	91.3	0.0	0.03	0.41	0.62	0.83	2.95	9714	1228	4	0	4	0	0	logfile
✔	8WTV	37843	2025-02-11	2023-10-19	2.7	2.75	2.65	2.8	0.004	0.54	0.0	0.04	15.81	0.01	2.297	1.86	0.22	2.3	97.7	0.0	1.82	0.66	0.88	2.95	2.8	0.003	0.50	0.0	0.04	16.10	0.00	2.284	1.16	1.77	2.4	97.6	0.0	2.01	0.18	0.70	0.89	2.77	4325	536	2	0	6	3	0	logfile
✔	8UNV	42418	2025-02-11	2023-10-19	3.3	3.79	3.62	3.8	0.006	0.87	0.0	0.06	14.50	0.00	2.201	4.63	0.34	2.0	98.0	0.0	0.91	0.65	0.85	3.31	3.7	0.002	0.52	0.0	0.04	14.77	0.00	2.434	3.35	1.36	1.9	98.0	0.1	1.43	0.37	0.64	0.85	2.59	6591	911	6	0	2	0	0	logfile
✔	8WTU	37842	2025-02-11	2023-10-19	2.7	2.73	2.63	2.8	0.003	0.68	0.0	0.04	15.11	0.01	2.301	2.07	0.00	3.7	96.3	0.0	0.10	0.58	0.80	2.70	2.7	0.004	0.66	0.0	0.04	15.24	0.01	2.548	2.07	1.97	3.7	96.3	0.0	1.15	1.29	0.70	0.88	2.78	4348	542	2	0	1	0	0	logfile
✔	8Uo4	42427	2025-02-11	2023-10-19	4.0	4.28	3.99	4.2	0.004	0.72	0.0	0.04	12.00	0.00	2.322	5.46	0.00	3.2	96.8	0.0	-0.04	0.69	0.80	—	4.2	0.007	1.02	1.0	0.04	13.54	0.00	2.359	4.25	3.35	3.1	96.9	0.0	0.58	0.95	0.69	0.80	—	5702	910	6	0	3	0	0	logfile
✔	8Uo0	42423	2025-02-11	2023-10-19	3.5	4.01	3.77	4.0	0.006	0.93	0.0	0.06	13.94	0.01	2.268	5.98	0.21	2.5	97.5	0.0	1.21	0.61	0.80	1.82	4.0	0.003	0.51	0.0	0.04	14.61	0.00	2.518	3.47	3.70	2.3	97.7	0.0	1.70	0.34	0.63	0.82	1.59	6222	902	6	0	2	0	0	logfile
✔	8UoA	42432	2025-02-10	2023-10-19	3.8	2.62	3.85	2.1	0.009	1.53	0.0	0.08	22.40	0.01	2.349	7.65	0.00	6.6	93.4	0.0	-1.49	0.50	0.38	1.36	2.1	0.004	0.91	0.0	0.05	13.61	0.00	2.346	13.29	2.47	10.9	89.1	0.0	-2.55	1.17	0.64	0.61	2.67	1440	215	5	0	7	0	0	logfile
✔	8Uo2	42425	2025-02-11	2023-10-19	3.6	4.02	3.83	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.47	0.0	0.04	14.61	0.00	2.502	3.19	2.20	1.5	98.5	0.0	1.96	0.93	0.65	0.81	2.99	6504	956	6	0	2	0	0	logfile
✘	8UNS	42415	2025-02-11	2023-10-19	3.4	3.73	3.46	3.7	0.004	0.77	0.0	0.05	14.48	0.00	2.332	3.61	0.00	2.1	97.9	0.0	1.05	0.65	0.86	4.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6683	916	6	0	2	1	0	logfile
✔	8QWD	18691	2025-02-13	2023-10-19	3.33	3.62	3.37	3.7	0.002	0.51	0.0	0.04	19.14	0.00	2.070	8.24	0.30	5.0	95.0	0.0	-1.20	0.67	0.80	1.81	3.7	0.005	0.62	0.0	0.04	19.41	0.00	2.056	8.35	2.67	9.6	90.4	0.0	-1.02	0.87	0.65	0.80	1.77	9204	1103	2	0	2	4	0	logfile
✔	8Uo3	42426	2025-02-11	2023-10-19	3.5	3.84	3.61	3.8	0.006	0.87	0.0	0.06	14.93	0.01	2.246	6.81	0.20	3.0	97.0	0.0	0.16	0.67	0.84	2.66	3.8	0.002	0.51	0.0	0.04	14.34	0.00	2.025	3.61	1.78	2.1	97.9	0.0	0.94	0.37	0.67	0.83	2.09	6650	977	6	0	3	0	0	logfile
✔	8WU1	37849	2025-02-12	2023-10-19	3.2	3.40	3.17	3.4	0.008	0.62	0.0	0.04	11.92	0.00	2.208	7.36	0.00	4.5	95.5	0.0	-0.58	0.66	0.79	3.60	3.4	0.005	1.01	1.0	0.05	14.07	0.00	2.473	8.08	2.02	4.6	95.4	0.0	-0.05	0.38	0.66	0.80	3.32	7250	1014	5	0	1	0	0	logfile
✔	8UNX	42420	2025-02-11	2023-10-19	3.6	3.87	3.64	3.9	0.006	0.96	0.0	0.06	13.81	0.01	2.177	5.50	0.00	2.3	97.7	0.0	1.34	0.63	0.82	2.78	3.9	0.002	0.53	0.0	0.04	14.77	0.00	2.505	3.38	1.34	1.2	98.8	0.0	1.65	0.41	0.65	0.84	2.17	6688	923	6	0	2	0	0	logfile

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