Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UNL	42408	2025-02-11	2023-10-19	3.3	3.59	3.34	3.6	0.005	0.68	0.0	0.04	14.03	0.00	2.228	3.82	0.00	1.6	98.4	0.0	1.49	0.66	0.88	2.99	3.6	0.002	0.45	0.0	0.04	13.89	0.00	2.502	2.86	0.99	1.3	98.7	0.0	1.68	0.92	0.68	0.88	2.99	6550	894	6	0	2	1	0	logfile
✔	8UNV	42418	2025-02-11	2023-10-19	3.3	3.79	3.62	3.8	0.006	0.87	0.0	0.06	14.50	0.00	2.201	4.63	0.34	2.0	98.0	0.0	0.91	0.65	0.85	3.31	3.7	0.002	0.52	0.0	0.04	14.77	0.00	2.434	3.35	1.36	1.9	98.0	0.1	1.43	0.37	0.64	0.85	2.59	6591	911	6	0	2	0	0	logfile
✔	8WTD	37832	2025-02-11	2023-10-18	3.06	3.33	3.05	3.4	0.005	0.90	7.0	0.05	18.48	0.00	2.232	8.87	0.72	5.3	93.9	0.8	-0.02	0.53	0.80	1.75	3.4	0.003	0.59	0.0	0.04	17.98	0.00	2.579	6.34	2.88	5.1	94.8	0.1	0.28	0.97	0.59	0.84	2.35	6456	790	3	0	4	0	0	logfile
✔	8QVX	18677	2025-02-11	2023-10-18	2.7	3.42	2.68	3.2	0.004	0.68	0.0	0.04	17.62	0.00	2.195	14.71	0.46	4.7	95.1	0.2	1.30	0.71	0.71	1.07	3.2	0.003	0.64	0.0	0.04	18.27	0.00	2.237	9.68	3.66	4.9	94.9	0.2	1.71	0.50	0.69	0.69	0.50	3948	496	2	0	0	0	0	logfile
✔	8UMX	42387	2025-02-12	2023-10-18	4.0	5.63	3.86	4.0	0.003	0.77	0.0	0.04	17.12	0.00	2.173	17.66	0.50	5.0	94.9	0.1	-0.01	0.52	0.81	—	4.0	0.003	0.78	0.0	0.04	17.60	0.00	2.444	16.42	3.77	4.3	95.6	0.1	0.35	1.74	0.54	0.86	—	7166	906	6	0	0	0	0	logfile
✔	8QVW	18674	2025-02-11	2023-10-18	3.0	3.25	3.07	3.2	0.003	0.60	0.0	0.04	18.02	0.00	2.155	14.69	0.23	4.3	95.7	0.0	1.25	0.75	0.76	1.70	3.2	0.003	0.68	0.0	0.04	18.66	0.00	2.491	12.16	2.53	5.0	95.0	0.0	1.21	1.20	0.73	0.75	1.88	3918	492	2	0	0	0	0	logfile
✔	8QW4	18680	2025-02-11	2023-10-18	2.9	3.70	2.97	3.7	0.007	1.10	1.0	0.06	13.20	0.01	2.091	17.12	0.26	14.0	86.0	0.0	-3.29	0.56	0.64	3.16	3.7	0.005	1.02	0.0	0.05	17.09	0.01	2.501	16.26	3.17	9.5	90.5	0.0	-1.91	1.23	0.54	0.67	2.11	3479	434	2	0	0	0	0	logfile
✔	8UMD	42376	2025-02-12	2023-10-17	3.6	4.61	3.60	3.7	0.003	0.72	0.0	0.04	16.78	0.01	2.098	13.27	0.50	4.9	94.8	0.3	0.54	0.50	0.80	0.85	3.7	0.003	0.71	0.0	0.04	17.25	0.00	2.495	10.74	3.26	3.9	95.8	0.3	0.67	1.75	0.51	0.84	0.77	7201	911	6	0	0	0	0	logfile
✔	8WST	37824	2025-02-12	2023-10-17	2.4	2.03	2.39	2.4	0.002	0.45	1.0	0.04	8.87	0.00	2.158	4.97	0.22	3.1	96.9	0.0	2.41	0.64	0.75	3.44	2.4	0.002	0.56	0.0	0.04	14.80	0.00	2.540	5.09	2.88	3.9	96.0	0.1	1.41	1.44	0.64	0.80	3.70	8286	1055	6	0	0	0	0	logfile
✔	8WSR	37822	2025-02-14	2023-10-17	2.99	2.42	3.08	2.2	0.005	0.82	2.0	0.06	17.39	0.01	1.124	6.73	1.45	2.7	97.3	0.0	-0.22	0.83	0.81	2.83	2.2	0.002	0.52	0.0	0.04	18.05	0.00	2.073	3.17	2.17	2.3	97.7	0.0	0.91	0.41	0.82	0.85	2.58	6475	789	4	0	8	0	0	logfile
✔	8WSS	37823	2025-02-13	2023-10-17	3.01	2.86	2.95	3.1	0.002	0.46	0.0	0.04	9.95	0.00	2.082	6.49	0.43	2.3	97.7	0.0	1.40	0.71	0.83	2.49	3.1	0.003	0.59	0.0	0.04	14.56	0.00	2.473	6.89	2.67	3.4	96.5	0.1	0.75	0.63	0.72	0.86	3.20	8797	1143	6	0	0	0	0	logfile
✔	8UMC	42375	2025-02-12	2023-10-17	2.5	2.12	2.52	1.9	0.005	0.68	0.0	0.05	17.53	0.01	2.045	9.69	1.16	2.9	96.9	0.1	-0.80	0.82	0.81	3.65	1.8	0.005	0.68	0.0	0.05	18.01	0.01	2.138	9.76	3.49	2.8	97.2	0.0	0.10	0.38	0.82	0.81	3.19	7198	890	6	0	2	0	0	logfile
✔	8UL9	42357	2025-02-11	2023-10-16	3.2	3.36	3.16	3.4	0.008	1.29	0.0	0.04	19.12	0.00	2.024	6.75	2.33	4.0	96.0	0.0	2.06	0.61	0.82	1.94	3.4	0.003	0.50	0.0	0.04	16.48	0.00	2.051	7.71	2.76	4.0	95.8	0.1	2.21	1.13	0.64	0.83	1.69	6674	774	5	0	14	1	0	logfile
✔	8WRL	37779	2025-02-11	2023-10-15	3.36	3.59	3.33	3.7	0.004	0.70	0.0	0.05	19.51	0.00	1.771	9.25	0.58	4.5	95.5	0.0	-0.27	0.54	0.77	1.66	3.7	0.003	0.54	0.0	0.04	17.39	0.00	2.435	7.43	3.60	4.2	95.8	0.0	0.39	0.35	0.53	0.78	1.39	6472	790	4	0	5	0	0	logfile
✔	8WRH	37776	2025-02-11	2023-10-14	3.08	3.33	3.08	3.4	0.004	0.68	1.0	0.05	18.70	0.00	2.151	9.11	0.00	4.8	94.8	0.4	0.28	0.61	0.83	2.27	3.4	0.003	0.57	0.0	0.04	17.89	0.00	2.492	6.97	1.44	4.3	95.7	0.0	0.69	0.91	0.60	0.83	1.97	6459	790	3	0	4	0	0	logfile
✔	8WRE	37775	2025-02-11	2023-10-13	2.9	3.39	2.87	3.3	0.003	0.54	0.0	0.04	12.09	0.00	2.265	3.87	0.00	1.9	98.1	0.0	1.24	0.72	0.86	2.82	3.3	0.003	0.56	0.0	0.04	14.47	0.00	2.557	3.08	1.85	2.4	97.6	0.0	1.55	0.29	0.69	0.89	2.58	6328	829	4	0	1	0	0	logfile
✔	8WRD	37774	2025-02-11	2023-10-13	3.05	3.46	3.00	3.4	0.004	0.55	0.0	0.04	15.71	0.00	2.177	4.66	0.14	3.0	97.0	0.0	0.84	0.69	0.84	2.84	3.4	0.003	0.56	0.0	0.04	15.92	0.00	2.511	4.42	4.13	2.7	97.3	0.0	0.89	0.20	0.65	0.87	2.82	6326	830	3	0	0	0	0	logfile
✔	8WR3	37761	2025-02-13	2023-10-12	3.1	3.32	3.11	3.4	0.005	0.92	0.0	0.05	20.75	0.01	2.136	5.95	0.57	3.4	96.5	0.1	-1.31	0.62	0.79	2.61	3.4	0.003	0.62	0.0	0.04	17.82	0.00	2.426	8.99	2.06	3.4	96.6	0.0	2.74	1.14	0.62	0.79	2.12	9022	1154	4	0	10	0	0	logfile
✔	8QTD	18649	2025-02-10	2023-10-12	3.6	3.77	3.60	3.8	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.8	0.002	0.57	0.0	0.04	13.75	0.00	2.481	6.87	2.34	4.5	95.5	0.0	0.15	0.52	0.55	0.79	2.96	3219	413	3	0	0	0	0	logfile
✔	8QT7	18645	2025-02-11	2023-10-12	2.2	2.42	2.27	2.4	0.009	0.96	0.0	0.04	19.30	0.00	2.169	4.96	0.86	1.8	98.2	0.0	1.00	0.61	0.80	4.04	2.4	0.004	0.68	0.0	0.04	19.21	0.00	2.482	3.65	1.15	1.8	98.2	0.0	1.48	0.25	0.62	0.81	4.01	3516	399	2	0	4	65	0	logfile

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