Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QTD	18649	2025-02-10	2023-10-12	3.6	3.77	3.60	3.8	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.8	0.002	0.57	0.0	0.04	13.75	0.00	2.481	6.87	2.34	4.5	95.5	0.0	0.15	0.52	0.55	0.79	2.96	3219	413	3	0	0	0	0	logfile
✔	8WQR	37752	2025-02-14	2023-10-12	3.08	4.11	3.07	3.5	0.003	0.58	0.0	0.04	12.19	0.00	2.166	13.13	0.00	6.8	93.0	0.2	-2.46	0.81	0.66	1.89	3.5	0.004	0.71	0.0	0.05	14.16	0.00	2.568	12.80	1.98	8.5	91.4	0.1	-2.71	0.42	0.82	0.69	1.59	9681	1415	2	0	0	0	0	logfile
✔	8QT9	18646	2025-02-11	2023-10-12	2.36	2.58	2.35	2.6	0.005	0.68	0.0	0.04	20.32	0.00	2.158	5.55	0.58	1.3	98.7	0.0	0.58	0.62	0.80	3.59	2.6	0.003	0.65	0.0	0.04	19.32	0.00	2.519	4.82	2.02	2.3	97.7	0.0	1.49	0.17	0.61	0.80	3.68	3511	399	2	0	4	64	0	logfile
✔	8WQP	37751	2025-02-12	2023-10-12	2.4	2.23	2.33	2.3	0.002	0.53	0.0	0.05	15.80	0.00	2.156	3.18	1.91	2.9	97.1	0.0	-0.22	0.62	0.77	4.69	2.3	0.003	0.55	0.0	0.05	15.82	0.00	2.472	3.18	2.46	4.0	96.0	0.0	-0.16	0.34	0.62	0.77	4.06	6842	452	2	0	14	0	3330	logfile
✔	8WR3	37761	2025-02-13	2023-10-12	3.1	3.32	3.11	3.4	0.005	0.92	0.0	0.05	20.75	0.01	2.136	5.95	0.57	3.4	96.5	0.1	-1.31	0.62	0.79	2.61	3.4	0.003	0.62	0.0	0.04	17.82	0.00	2.426	8.99	2.06	3.4	96.6	0.0	2.74	1.14	0.62	0.79	2.12	9022	1154	4	0	10	0	0	logfile
✔	8WQi	37746	2025-02-11	2023-10-11	3.5	3.71	3.53	3.7	0.003	0.62	0.0	0.04	14.51	0.00	2.188	9.29	0.00	10.2	89.8	0.0	-1.75	0.63	0.82	1.38	3.7	0.003	0.67	0.0	0.04	16.92	0.00	2.439	11.86	2.19	9.9	90.1	0.0	-0.60	0.54	0.65	0.81	0.91	5074	644	2	0	0	0	0	logfile
✔	8QSQ	18639	2025-02-11	2023-10-11	3.7	4.53	6.42	3.8	0.002	0.46	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.003	0.69	0.0	0.04	14.14	0.00	2.525	15.50	1.58	3.4	96.6	0.0	-0.11	2.38	0.64	0.73	0.69	6512	791	3	0	6	0	0	logfile
✔	8WQD	37740	2025-02-11	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.004	0.55	0.0	0.04	16.72	0.00	2.534	8.82	2.00	6.9	93.1	0.0	0.42	0.31	0.67	0.83	1.94	5046	641	2	0	0	0	0	logfile
✔	8QSK	18634	2025-02-13	2023-10-10	3.3	3.77	3.34	3.6	0.003	0.63	0.0	0.04	12.96	0.01	2.235	7.41	1.59	6.9	92.9	0.2	1.79	0.77	0.75	0.74	3.6	0.003	0.69	0.0	0.04	14.65	0.00	2.604	7.82	3.29	6.6	93.4	0.0	1.89	0.87	0.79	0.79	1.54	8506	1046	4	0	16	0	0	logfile
✔	8QSN	18637	2025-02-11	2023-10-10	3.54	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.91	0.0	0.05	15.75	0.00	2.482	15.76	2.95	3.5	96.5	0.0	1.66	1.46	0.56	0.77	1.37	3579	464	1	0	0	0	0	logfile
✔	8UiC	42292	2025-02-14	2023-10-10	3.54	3.85	3.66	3.9	0.007	0.97	1.0	0.06	16.03	0.00	2.082	6.84	1.99	9.2	90.8	0.0	-1.75	0.71	0.80	1.94	3.9	0.003	0.65	0.0	0.04	17.34	0.00	2.213	8.23	3.43	7.5	92.5	0.0	-0.26	0.41	0.73	0.81	1.58	9971	1227	3	0	2	0	0	logfile
✔	8QSL	18635	2025-02-13	2023-10-10	2.81	3.65	2.98	3.5	0.004	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.92	0.0	0.05	15.78	0.00	2.453	10.69	2.32	7.4	92.6	0.0	1.02	1.19	0.58	0.77	1.31	8506	1046	4	0	16	0	0	logfile
✔	8WPW	37725	2025-02-14	2023-10-10	2.49	2.20	2.52	1.8	0.003	0.50	0.0	0.04	9.27	0.01	2.131	4.50	1.63	3.2	96.6	0.2	0.00	0.80	0.82	4.52	1.8	0.004	0.64	0.0	0.04	13.56	0.01	2.497	4.60	3.45	3.8	96.1	0.2	0.04	0.94	0.83	0.85	3.92	9930	1294	8	0	3	0	0	logfile
✔	8UiP	42301	2025-02-10	2023-10-10	4.3	2.81	4.26	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	2.0	0.003	0.78	0.0	0.04	14.41	0.01	2.567	18.18	0.00	8.8	91.2	0.0	-2.36	1.60	0.41	0.50	—	2316	303	3	0	0	0	0	logfile
✔	8WPY	37726	2025-02-12	2023-10-10	3.02	2.32	3.01	2.1	0.003	0.50	0.0	0.04	10.49	0.00	2.208	3.63	0.65	2.7	97.3	0.0	0.14	0.76	0.79	3.69	2.0	0.005	0.62	0.0	0.04	13.50	0.00	2.430	5.87	2.06	3.5	96.5	0.0	-0.18	0.96	0.77	0.82	3.24	8408	1090	8	0	4	0	0	logfile
✔	8QSM	18636	2025-02-11	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.92	0.0	0.04	15.64	0.00	2.470	13.55	2.68	3.7	96.3	0.0	1.68	1.84	0.56	0.77	1.02	3579	464	1	0	0	0	0	logfile
✔	8WP8	37711	2025-02-14	2023-10-09	2.89	2.38	2.91	2.1	0.003	0.58	0.0	0.05	15.47	0.01	2.100	5.02	0.00	4.6	95.4	0.0	0.24	0.74	0.74	2.55	2.2	0.004	1.01	1.0	0.04	16.25	0.00	2.085	4.78	2.47	5.2	94.8	0.0	0.33	0.55	0.78	0.79	2.35	6539	780	7	0	14	0	0	logfile
✔	8QRQ	18623	2025-02-10	2023-10-09	2.74	3.15	2.38	3.1	0.003	0.50	0.0	0.04	13.40	0.00	2.246	5.20	0.91	1.5	98.5	0.0	2.09	0.42	0.82	3.62	3.1	0.003	0.51	0.0	0.04	14.43	0.00	2.259	5.04	1.83	1.7	98.3	0.0	3.05	0.92	0.43	0.83	3.80	3092	415	2	0	3	0	0	logfile
✘	8QRo	18621	2025-02-13	2023-10-09	2.6	3.08	2.53	2.9	0.002	0.52	0.0	0.04	11.99	0.00	2.231	6.31	0.31	1.5	98.5	0.0	0.95	0.65	0.87	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9273	1245	6	0	9	0	0	logfile
✔	8QRU	18626	2025-02-10	2023-10-09	2.9	3.28	2.75	3.2	0.003	0.52	0.0	0.04	13.62	0.01	2.257	6.45	0.61	2.0	98.0	0.0	1.76	0.50	0.88	4.30	3.2	0.003	0.66	0.0	0.04	15.47	0.01	2.533	7.71	1.83	1.0	99.0	0.0	1.94	0.94	0.50	0.88	3.58	3093	416	2	0	0	0	0	logfile

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