Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Wi4	37557	2025-02-14	2023-09-24	3.2	3.46	3.23	3.4	0.003	0.57	0.0	0.04	18.33	0.00	2.276	8.11	0.39	5.2	94.3	0.5	1.03	0.65	0.77	0.76	3.4	0.003	0.60	0.0	0.04	18.37	0.00	2.471	9.10	3.00	4.8	94.7	0.4	0.63	0.46	0.67	0.83	1.50	9443	1207	1	0	0	0	0	logfile
✔	8Wi5	37558	2025-02-14	2023-09-24	3.46	3.75	3.44	3.7	0.002	0.47	0.0	0.04	16.84	0.01	2.198	6.30	0.47	2.3	97.7	0.0	2.62	0.54	0.62	0.66	3.7	0.003	0.56	0.0	0.04	17.19	0.00	2.342	5.39	2.35	3.0	97.0	0.0	1.92	0.55	0.64	0.78	1.52	9735	1242	2	0	0	0	0	logfile
✔	8Wi3	37556	2025-02-13	2023-09-24	3.38	3.85	3.53	3.8	0.004	0.68	0.0	0.04	17.11	0.00	2.187	6.04	0.38	6.6	93.3	0.1	1.08	0.63	0.76	0.50	3.8	0.004	0.64	0.0	0.04	17.62	0.00	2.453	4.53	3.85	7.1	92.8	0.2	1.29	0.34	0.63	0.80	0.52	9489	1208	1	0	0	0	0	logfile
✔	8WHZ	37553	2025-02-11	2023-09-23	3.93	4.21	3.90	4.2	0.004	0.79	0.0	0.05	14.48	0.01	1.873	15.50	0.29	4.1	95.8	0.1	-0.54	0.71	0.72	1.73	4.1	0.003	0.74	0.0	0.04	16.56	0.00	2.300	11.01	2.01	3.3	96.6	0.1	0.18	2.61	0.74	0.77	0.72	6515	791	4	0	8	0	0	logfile
✔	8UBE	42084	2025-02-14	2023-09-22	3.05	3.26	3.05	3.2	0.012	1.65	1.0	0.12	26.94	0.01	1.606	51.54	23.26	11.5	84.6	3.9	-4.56	0.62	0.63	2.60	3.2	0.005	0.81	0.0	0.04	23.64	0.01	2.119	22.81	3.83	6.6	92.9	0.5	-0.66	0.99	0.70	0.72	2.51	10613	876	9	167	0	0	0	logfile
✔	8UBB	42081	2025-02-14	2023-09-22	3.23	3.27	3.07	3.2	0.010	1.21	1.0	0.06	25.82	0.01	2.199	41.97	20.00	10.7	85.7	3.6	-4.10	0.70	0.74	3.02	3.2	0.006	0.82	0.0	0.04	23.11	0.01	2.275	24.70	3.09	7.4	91.8	0.8	-0.84	0.96	0.75	0.76	2.00	10349	891	9	148	0	0	0	logfile
✔	8WGW	37517	2025-02-11	2023-09-22	2.9	3.23	3.07	3.2	0.004	0.59	0.0	0.04	19.74	0.00	2.167	9.11	0.14	4.4	95.6	0.0	-0.16	0.66	0.79	3.06	3.2	0.003	0.57	0.0	0.04	16.77	0.00	2.602	6.31	2.15	4.9	95.1	0.0	0.04	0.99	0.62	0.78	2.90	6564	794	5	0	9	0	0	logfile
✔	8UB8	42078	2025-02-14	2023-09-22	3.28	3.44	3.22	3.4	0.011	1.43	0.0	0.11	23.56	0.01	1.887	27.19	6.27	8.7	89.0	2.3	-4.02	0.65	0.72	3.22	3.4	0.004	0.67	0.0	0.04	22.18	0.01	2.295	13.12	3.07	5.9	93.6	0.6	0.16	0.63	0.75	0.81	3.17	10299	897	9	143	0	0	0	logfile
✔	8UB7	42077	2025-02-14	2023-09-22	3.2	3.38	3.19	3.3	0.011	1.53	0.0	0.10	25.46	0.01	2.230	13.19	20.48	9.1	88.6	2.3	-3.80	0.64	0.72	2.49	3.3	0.003	0.65	0.0	0.04	22.35	0.01	2.111	11.37	2.68	5.6	93.9	0.6	0.71	1.62	0.76	0.81	1.86	10399	893	10	148	2	0	0	logfile
✔	8UBC	42082	2025-02-13	2023-09-22	3.29	3.39	3.14	3.3	0.007	1.06	0.0	0.05	25.64	0.01	2.145	37.84	25.31	10.5	84.9	4.6	-5.01	0.69	0.73	2.33	3.3	0.006	0.87	0.0	0.04	22.60	0.01	2.259	27.17	4.49	7.6	92.0	0.3	-1.51	1.37	0.74	0.75	1.70	9092	880	8	93	0	0	0	logfile
✔	8UBD	42083	2025-02-14	2023-09-22	3.05	3.26	3.05	3.2	0.012	1.62	2.0	0.12	25.59	0.01	2.132	43.56	20.43	10.2	86.1	3.8	-3.87	0.58	0.63	2.55	3.2	0.004	0.73	0.0	0.04	22.65	0.00	2.142	19.66	3.36	6.2	93.5	0.3	-0.21	1.71	0.70	0.73	2.00	10368	890	9	149	0	0	0	logfile
✔	8UBA	42080	2025-02-14	2023-09-22	3.2	3.46	3.22	3.4	0.011	1.25	0.0	0.10	23.38	0.01	2.202	28.19	7.20	8.2	89.7	2.0	-3.80	0.72	0.77	2.89	3.4	0.003	0.70	0.0	0.04	22.05	0.01	2.369	16.48	3.47	6.0	93.6	0.5	0.13	0.87	0.75	0.78	2.05	10299	897	9	143	0	0	0	logfile
✔	8WGX	37520	2025-02-13	2023-09-22	3.47	3.84	3.53	3.8	0.003	0.54	0.0	0.04	16.22	0.00	2.283	4.10	0.22	3.3	96.7	0.0	1.83	0.56	0.74	1.75	3.8	0.003	0.50	0.0	0.04	16.30	0.00	2.397	3.99	1.52	2.9	97.1	0.0	1.85	0.45	0.55	0.76	2.03	8760	547	2	0	2	0	4363	logfile
✔	8WGR	37515	2025-02-13	2023-09-22	2.75	3.15	2.82	3.1	0.004	0.71	0.0	0.04	17.04	0.00	2.026	4.64	2.38	3.1	96.7	0.2	1.68	0.54	0.77	1.91	3.1	0.003	0.56	0.0	0.04	17.00	0.00	2.484	2.94	0.87	2.8	97.2	0.0	1.70	1.22	0.53	0.77	3.06	8830	548	2	0	4	34	4371	logfile
✔	8UB9	42079	2025-02-14	2023-09-22	3.07	3.37	3.15	3.3	0.011	1.29	1.0	0.10	24.95	0.01	2.190	21.06	18.47	9.3	87.7	3.0	-3.63	0.69	0.76	2.93	3.3	0.004	0.73	0.0	0.04	22.31	0.01	2.177	15.41	2.68	5.9	93.5	0.6	0.02	0.85	0.71	0.77	2.13	10370	893	9	148	0	0	0	logfile
✔	8UBF	42085	2025-02-13	2023-09-22	3.61	3.77	3.56	3.6	0.007	0.98	0.0	0.05	24.77	0.01	2.306	14.72	22.69	9.2	87.6	3.2	-3.90	0.73	0.73	2.15	3.6	0.004	0.78	0.0	0.04	21.30	0.01	2.276	15.81	1.90	7.4	92.4	0.2	-0.14	1.44	0.76	0.75	1.48	9291	882	8	102	0	0	0	logfile
✔	8UAH	42064	2025-02-11	2023-09-21	3.3	3.50	3.24	3.5	0.005	1.03	0.0	0.05	20.84	0.01	2.182	11.87	3.90	13.0	86.4	0.7	-4.43	0.72	0.83	1.72	3.5	0.003	0.73	0.0	0.04	19.98	0.00	2.512	6.22	5.12	13.4	86.4	0.2	-3.62	0.87	0.71	0.84	1.96	3534	451	2	0	0	0	0	logfile
✔	8WG4	37502	2025-02-11	2023-09-20	3.5	3.68	3.44	3.7	0.009	1.36	1.0	0.08	14.67	0.01	2.353	0.92	1.82	4.0	96.0	0.0	-2.47	0.49	0.73	2.27	3.7	0.003	0.62	0.0	0.04	15.02	0.00	2.606	4.09	4.30	3.4	96.6	0.0	1.45	0.64	0.61	0.79	0.83	5887	688	2	0	8	0	0	logfile
✔	8WG7	37504	2025-02-12	2023-09-20	2.54	3.39	2.59	3.2	0.003	0.54	0.0	0.04	13.04	0.00	2.167	8.69	0.12	3.6	96.2	0.3	1.50	0.67	0.78	2.51	3.2	0.003	0.62	0.0	0.04	16.12	0.00	2.525	7.38	2.32	3.7	96.3	0.0	1.65	0.42	0.65	0.78	2.29	8123	1030	5	0	0	0	0	logfile
✔	8WG3	37501	2025-02-11	2023-09-20	3.4	3.61	3.39	3.6	0.009	1.47	1.0	0.08	16.49	0.01	2.528	0.86	3.30	5.6	94.4	0.0	-2.32	0.50	0.75	2.29	3.6	0.003	0.66	0.0	0.04	16.12	0.00	2.386	7.01	2.06	3.4	96.6	0.0	1.46	2.31	0.56	0.76	1.10	4585	548	2	0	4	0	0	logfile

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