Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WG3	37501	2025-02-11	2023-09-20	3.4	3.61	3.39	3.6	0.009	1.47	1.0	0.08	16.49	0.01	2.528	0.86	3.30	5.6	94.4	0.0	-2.32	0.50	0.75	2.29	3.6	0.003	0.66	0.0	0.04	16.12	0.00	2.386	7.01	2.06	3.4	96.6	0.0	1.46	2.31	0.56	0.76	1.10	4585	548	2	0	4	0	0	logfile
✔	8WG4	37502	2025-02-11	2023-09-20	3.5	3.68	3.44	3.7	0.009	1.36	1.0	0.08	14.67	0.01	2.353	0.92	1.82	4.0	96.0	0.0	-2.47	0.49	0.73	2.27	3.7	0.003	0.62	0.0	0.04	15.02	0.00	2.606	4.09	4.30	3.4	96.6	0.0	1.45	0.64	0.61	0.79	0.83	5887	688	2	0	8	0	0	logfile
✔	8UA6	42051	2025-02-14	2023-09-20	3.9	4.17	3.89	4.1	0.006	1.14	1.0	0.05	18.63	0.01	2.010	16.26	1.28	12.0	87.0	1.0	-3.13	0.70	0.71	1.61	4.1	0.004	0.84	0.0	0.05	18.87	0.00	2.490	11.50	3.57	12.0	87.4	0.6	-1.89	1.18	0.74	0.77	1.48	9806	1232	5	0	0	0	0	logfile
✘	8WFS	37498	2025-02-13	2023-09-20	3.36	2.57	3.39	2.2	0.005	0.87	0.0	0.05	19.14	0.01	2.261	13.55	0.94	5.8	94.2	0.0	-1.77	0.73	0.75	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6274	808	13	0	14	0	0	logfile
✔	8UA3	42049	2025-02-11	2023-09-20	3.8	4.06	3.83	4.0	0.007	0.92	0.0	0.05	18.05	0.01	2.166	12.30	0.60	7.7	91.8	0.5	-2.26	0.68	0.80	2.08	4.0	0.004	0.79	0.0	0.05	18.52	0.00	2.562	8.46	5.42	8.7	91.1	0.2	-1.68	0.73	0.71	0.82	2.20	4450	570	3	0	0	0	0	logfile
✔	8WFL	37495	2025-02-11	2023-09-19	3.03	3.10	3.19	3.5	0.009	0.81	0.0	0.07	17.69	0.00	2.223	11.05	0.21	6.8	93.2	0.0	-0.36	0.54	0.79	2.07	3.2	0.003	0.59	0.0	0.04	18.05	0.00	2.579	7.63	6.21	5.7	94.3	0.0	0.43	0.33	0.53	0.79	1.92	4414	552	2	0	1	0	0	logfile
✔	8WFi	37492	2025-02-11	2023-09-19	2.58	2.82	2.57	2.8	0.002	0.57	0.0	0.04	12.58	0.00	2.278	2.56	0.00	2.4	97.6	0.0	1.63	0.62	0.81	3.69	2.8	0.003	0.55	0.0	0.04	15.05	0.00	2.208	2.21	0.88	2.8	97.2	0.0	1.92	0.89	0.65	0.84	3.43	4347	543	3	0	3	37	0	logfile
✔	8WFK	37494	2025-02-11	2023-09-19	3.22	3.53	3.37	3.6	0.004	0.62	0.0	0.04	16.76	0.00	2.137	5.06	0.00	5.0	95.0	0.0	-1.97	0.54	0.85	2.36	3.6	0.003	0.58	0.0	0.04	16.72	0.00	2.331	3.68	2.82	5.0	95.0	0.0	0.21	0.39	0.59	0.87	1.91	4371	546	2	0	4	0	0	logfile
✔	8U8Z	42030	2025-02-12	2023-09-18	3.25	4.03	3.29	3.8	0.003	0.66	0.0	0.05	17.59	0.01	2.082	10.48	0.91	2.2	97.8	0.0	0.97	0.87	0.82	2.07	3.8	0.002	0.58	0.0	0.04	17.98	0.00	2.599	7.34	2.38	2.6	97.4	0.0	0.84	0.88	0.87	0.85	2.27	8147	1034	4	0	2	0	0	logfile
✔	8U89	42018	2025-02-14	2023-09-16	3.3	3.66	3.52	3.7	0.003	0.70	0.0	0.04	16.18	0.01	2.091	8.51	0.54	2.4	97.6	0.0	0.98	0.67	0.79	1.47	3.7	0.003	0.87	1.0	0.04	16.89	0.00	2.092	7.81	2.36	2.8	97.2	0.1	1.41	1.14	0.68	0.80	1.35	9928	1241	4	0	2	0	0	logfile
✔	8QKi	18463	2025-02-14	2023-09-15	3.46	4.02	3.31	3.8	0.004	0.75	0.0	0.05	12.59	0.00	2.031	8.10	0.54	3.4	96.6	0.0	2.14	0.60	0.80	2.58	3.8	0.003	0.67	0.0	0.04	14.31	0.00	2.458	8.67	2.33	3.4	96.6	0.0	3.49	0.94	0.59	0.88	2.59	10188	1242	12	0	6	0	0	logfile
✔	8QKK	18464	2025-02-11	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.004	1.16	1.0	0.05	15.86	0.00	2.529	9.27	1.68	1.9	98.1	0.0	1.66	0.79	0.64	0.80	1.23	5581	730	1	0	0	0	0	logfile
✔	8WD6	37455	2025-02-12	2023-09-14	2.87	3.11	2.89	3.2	0.003	0.56	1.0	0.04	16.49	0.00	2.431	5.56	0.12	2.7	97.3	0.0	1.60	0.57	0.77	1.54	3.2	0.003	0.58	0.0	0.04	17.33	0.00	2.521	5.31	2.89	2.4	97.6	0.0	1.73	1.19	0.57	0.78	1.33	7973	1025	2	0	0	0	0	logfile
✔	8QJX	18453	2025-02-12	2023-09-14	3.3	3.68	3.02	3.3	0.005	0.59	0.0	0.05	13.62	0.00	1.871	5.41	0.00	3.7	96.3	0.0	-0.83	0.88	0.87	4.13	3.3	0.005	0.66	0.0	0.05	15.35	0.00	2.465	6.38	2.59	3.1	96.9	0.0	-0.52	0.77	0.88	0.88	3.51	7868	997	5	0	0	0	0	logfile
✔	8QK3	18455	2025-02-12	2023-09-14	3.2	4.00	3.10	3.4	0.003	0.60	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.004	0.75	0.0	0.04	14.84	0.00	2.488	10.00	2.71	4.0	96.0	0.0	-0.62	0.91	0.87	0.86	3.07	7535	955	5	0	0	0	0	logfile
✔	8QK6	18457	2025-02-14	2023-09-14	3.18	3.70	2.81	3.4	0.005	0.57	0.0	0.05	9.59	0.00	2.154	4.31	1.09	1.5	98.5	0.0	4.06	0.63	0.76	2.53	3.4	0.003	0.56	0.0	0.04	13.16	0.00	2.399	7.10	1.00	2.2	97.8	0.0	3.75	0.99	0.60	0.90	2.52	10056	1230	12	0	6	0	0	logfile
✔	8QJY	18454	2025-02-11	2023-09-14	3.5	4.18	3.43	3.7	0.003	0.61	0.0	0.05	13.67	0.00	1.682	8.80	0.14	2.7	97.3	0.0	-0.59	0.85	0.80	3.37	3.9	0.004	0.69	0.0	0.04	15.52	0.00	2.455	8.64	2.81	3.8	96.2	0.0	-0.56	0.91	0.86	0.83	2.91	6287	798	4	0	0	0	0	logfile
✔	8U64	41943	2025-02-12	2023-09-13	3.13	2.26	3.11	1.9	0.004	0.59	0.0	0.04	18.15	0.00	2.121	11.26	0.48	5.5	94.5	0.0	-0.22	0.75	0.74	2.09	1.9	0.004	0.64	0.0	0.04	18.31	0.01	2.525	10.08	3.25	5.0	95.0	0.0	0.22	0.28	0.76	0.75	2.23	7674	970	4	0	2	0	0	logfile
✔	8U5V	41934	2025-02-11	2023-09-13	2.77	3.23	2.79	3.2	0.008	1.07	1.0	0.06	11.86	0.01	2.429	2.55	1.24	2.0	98.0	0.0	-0.23	0.72	0.83	3.42	3.1	0.004	0.82	0.0	0.05	16.02	0.00	2.434	12.77	1.45	1.1	98.9	0.0	2.48	1.74	0.70	0.83	3.04	4397	556	2	0	2	0	0	logfile
✔	8WCN	37444	2025-02-11	2023-09-13	3.2	2.54	2.95	3.1	0.004	0.72	0.0	0.04	16.65	0.00	1.902	13.05	0.50	2.7	97.3	0.0	0.54	0.72	0.71	1.25	3.0	0.004	0.76	0.0	0.04	17.31	0.00	1.903	10.59	5.16	3.3	96.7	0.0	1.30	0.55	0.77	0.74	1.10	6086	757	4	0	6	0	0	logfile

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