Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U62	41941	2025-02-12	2023-09-13	3.3	2.42	3.25	2.1	0.003	0.61	0.0	0.04	18.21	0.00	2.175	8.41	0.59	2.8	97.2	0.0	0.96	0.73	0.77	2.12	2.1	0.005	0.61	0.0	0.04	18.57	0.00	2.444	7.96	5.05	3.5	96.5	0.0	1.47	0.73	0.73	0.77	1.99	7884	998	4	0	2	0	0	logfile
✔	8WCN	37444	2025-02-11	2023-09-13	3.2	2.54	2.95	3.1	0.004	0.72	0.0	0.04	16.65	0.00	1.902	13.05	0.50	2.7	97.3	0.0	0.54	0.72	0.71	1.25	3.0	0.004	0.76	0.0	0.04	17.31	0.00	1.903	10.59	5.16	3.3	96.7	0.0	1.30	0.55	0.77	0.74	1.10	6086	757	4	0	6	0	0	logfile
✔	8U5V	41934	2025-02-11	2023-09-13	2.77	3.23	2.79	3.2	0.008	1.07	1.0	0.06	11.86	0.01	2.429	2.55	1.24	2.0	98.0	0.0	-0.23	0.72	0.83	3.42	3.1	0.004	0.82	0.0	0.05	16.02	0.00	2.434	12.77	1.45	1.1	98.9	0.0	2.48	1.74	0.70	0.83	3.04	4397	556	2	0	2	0	0	logfile
✔	8U64	41943	2025-02-12	2023-09-13	3.13	2.26	3.11	1.9	0.004	0.59	0.0	0.04	18.15	0.00	2.121	11.26	0.48	5.5	94.5	0.0	-0.22	0.75	0.74	2.09	1.9	0.004	0.64	0.0	0.04	18.31	0.01	2.525	10.08	3.25	5.0	95.0	0.0	0.22	0.28	0.76	0.75	2.23	7674	970	4	0	2	0	0	logfile
✔	8U63	41942	2025-02-12	2023-09-13	3.01	2.25	2.99	2.0	0.003	0.56	0.0	0.04	17.94	0.00	2.151	8.88	0.48	2.8	97.2	0.0	-0.74	0.77	0.79	2.41	2.0	0.003	0.61	0.0	0.04	18.51	0.00	2.576	8.49	3.10	2.2	97.8	0.0	1.13	0.37	0.77	0.79	2.54	7758	984	4	0	2	0	0	logfile
✔	8U65	41944	2025-02-12	2023-09-13	3.01	2.26	3.04	1.9	0.002	0.58	0.0	0.04	18.68	0.00	2.164	12.11	0.36	4.8	95.2	0.0	-0.65	0.71	0.67	1.30	1.9	0.003	0.65	0.0	0.04	18.95	0.01	2.437	10.46	3.14	4.2	95.8	0.0	-0.84	0.74	0.71	0.67	0.93	7636	967	4	0	2	0	0	logfile
✔	8WCS	37448	2025-02-14	2023-09-13	3.1	3.46	3.33	3.5	0.004	0.77	0.0	0.05	21.59	0.01	2.148	4.70	0.74	8.6	91.4	0.0	-2.55	0.70	0.76	1.66	3.5	0.002	0.58	0.0	0.04	21.21	0.00	2.218	6.39	2.74	8.9	91.1	0.0	-0.16	0.33	0.67	0.77	1.47	10096	1044	3	66	1	0	0	logfile
✔	8U53	41911	2025-02-13	2023-09-12	2.6	2.33	2.54	2.9	0.024	1.71	0.0	0.10	15.25	0.01	2.498	0.88	0.00	1.1	98.9	0.0	0.71	0.78	0.81	4.12	2.9	0.003	0.59	0.0	0.04	17.16	0.00	2.503	5.66	1.51	2.2	97.8	0.0	1.64	0.62	0.75	0.82	2.40	9562	1074	6	0	98	0	0	logfile
✔	8QJ2	18442	2025-02-12	2023-09-12	3.4	2.53	3.44	2.2	0.002	0.49	0.0	0.04	10.54	0.00	2.203	6.27	2.47	7.3	92.7	0.0	-0.51	0.76	0.75	2.79	2.2	0.003	0.60	0.0	0.04	13.99	0.00	2.437	7.46	2.59	6.6	93.4	0.0	-0.21	0.35	0.76	0.76	1.86	8108	1064	6	0	0	0	0	logfile
✔	8U58	41914	2025-02-13	2023-09-12	2.45	3.14	2.64	2.9	0.007	1.06	0.0	0.05	11.80	0.01	2.518	2.26	0.00	2.0	98.0	0.0	-0.71	0.66	0.71	0.94	3.0	0.004	0.68	0.0	0.04	14.52	0.00	2.578	11.06	1.63	1.1	98.9	0.0	2.81	0.99	0.68	0.81	2.48	8884	1130	4	0	2	0	0	logfile
✔	8U56	41913	2025-02-13	2023-09-12	2.75	3.46	2.81	3.3	0.007	0.96	0.0	0.05	13.55	0.01	2.398	4.25	0.00	1.5	98.5	0.0	-0.73	0.78	0.80	3.21	3.3	0.005	0.82	0.0	0.04	15.91	0.00	2.515	13.20	2.76	0.9	99.1	0.0	2.50	2.39	0.72	0.79	2.40	8588	1082	4	0	4	0	0	logfile
✔	8U5C	41916	2025-02-13	2023-09-12	2.68	3.51	2.70	3.3	0.010	1.58	4.0	0.09	13.02	0.01	2.595	1.30	0.62	3.0	97.0	0.0	-0.60	0.68	0.83	3.93	3.3	0.003	0.65	0.0	0.04	14.27	0.00	2.518	6.93	1.03	1.5	98.5	0.0	2.98	0.56	0.62	0.79	2.71	9032	1150	4	0	4	0	0	logfile
✘	8U54	41912	2025-02-14	2023-09-12	2.65	3.71	2.66	3.5	0.006	0.79	0.0	0.05	12.07	0.01	2.221	3.48	0.17	3.6	96.4	0.0	-1.34	0.61	0.67	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10745	1359	4	0	2	0	0	logfile
✔	8U5N	41929	2025-02-11	2023-09-12	3.0	3.95	2.93	3.8	0.006	0.86	0.0	0.05	12.97	0.01	2.281	1.83	0.80	3.0	97.0	0.0	-0.95	0.55	0.67	0.23	3.7	0.004	0.97	0.0	0.05	16.22	0.00	2.390	16.08	2.99	2.6	97.4	0.0	1.34	4.59	0.55	0.77	1.00	4535	577	2	0	1	0	0	logfile
✔	8U5Q	41930	2025-02-12	2023-09-12	2.4	3.32	2.38	3.1	0.006	0.90	0.0	0.05	12.12	0.01	2.402	3.55	0.23	2.7	97.3	0.0	-1.44	0.64	0.81	3.07	3.1	0.003	0.74	0.0	0.04	14.85	0.00	2.503	10.70	2.08	0.7	99.3	0.0	2.39	1.75	0.56	0.78	2.78	7896	1004	4	0	2	0	0	logfile
✔	8WCC	37438	2025-02-10	2023-09-11	3.04	2.88	1.90	3.2	0.017	2.05	5.0	0.15	16.41	0.02	2.464	8.33	2.87	9.2	90.8	0.0	-3.38	0.84	0.81	2.50	3.2	0.003	0.71	0.0	0.04	16.36	0.00	2.617	6.61	1.91	2.7	97.3	0.0	1.44	1.18	0.81	0.78	2.28	2056	270	2	0	1	0	0	logfile
✔	8WC9	37435	2025-02-12	2023-09-11	3.2	3.47	3.29	3.5	0.007	0.91	3.0	0.06	13.81	0.01	2.205	9.72	1.16	5.5	94.5	0.0	-0.70	0.65	0.83	3.84	3.5	0.003	0.59	0.0	0.04	15.53	0.00	2.512	4.40	1.51	3.8	96.2	0.0	0.09	0.96	0.62	0.83	3.00	8394	1107	6	0	1	0	0	logfile
✔	8WCE	37439	2025-02-14	2023-09-11	3.09	3.37	3.25	3.4	0.003	0.64	0.0	0.04	21.71	0.00	2.259	4.16	0.33	9.2	90.8	0.0	-0.41	0.75	0.83	2.64	3.3	0.005	0.66	0.0	0.04	21.64	0.00	2.144	4.21	3.75	10.1	89.9	0.0	0.15	0.89	0.72	0.88	2.50	10350	994	5	97	2	0	0	logfile
✔	8WC8	37434	2025-02-12	2023-09-11	2.9	3.26	2.95	3.2	0.013	0.85	5.0	0.06	12.53	0.01	2.252	9.20	0.26	2.5	97.5	0.0	1.02	0.66	0.81	3.77	3.2	0.003	0.58	0.0	0.04	15.51	0.00	2.396	8.42	2.74	2.1	97.9	0.0	0.85	0.36	0.62	0.83	3.36	8062	1101	6	0	1	0	0	logfile
✔	8WCA	37436	2025-02-12	2023-09-11	3.48	3.71	3.50	3.7	0.006	0.87	5.0	0.06	13.52	0.01	2.105	10.04	0.89	4.3	95.7	0.0	-0.41	0.66	0.74	1.96	3.7	0.003	0.62	0.0	0.04	15.12	0.00	2.427	5.69	2.41	3.1	96.9	0.0	0.47	0.40	0.69	0.80	1.44	8160	1110	6	0	1	0	0	logfile

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