Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WCA	37436	2025-02-12	2023-09-11	3.48	3.71	3.50	3.7	0.006	0.87	5.0	0.06	13.52	0.01	2.105	10.04	0.89	4.3	95.7	0.0	-0.41	0.66	0.74	1.96	3.7	0.003	0.62	0.0	0.04	15.12	0.00	2.427	5.69	2.41	3.1	96.9	0.0	0.47	0.40	0.69	0.80	1.44	8160	1110	6	0	1	0	0	logfile
✔	8U4V	41899	2025-02-12	2023-09-11	2.99	3.26	2.62	3.1	0.006	1.12	2.0	0.06	16.56	0.00	2.063	13.44	0.83	3.4	96.6	0.0	0.66	0.71	0.79	3.57	3.1	0.004	0.91	0.0	0.04	16.28	0.00	2.310	7.14	2.08	2.3	97.7	0.0	1.46	1.59	0.82	0.90	3.40	6637	862	8	0	1	3	0	logfile
✔	8WC4	37430	2025-02-12	2023-09-11	3.1	3.34	3.05	3.3	0.006	0.81	2.0	0.06	13.02	0.01	2.216	7.71	0.93	4.4	95.6	0.0	-0.26	0.69	0.85	3.75	3.3	0.003	0.59	0.0	0.04	15.00	0.00	2.436	3.73	1.75	2.6	97.4	0.0	0.91	0.94	0.72	0.88	3.17	8394	1110	6	0	1	0	0	logfile
✔	8WC7	37433	2025-02-12	2023-09-11	3.1	3.32	3.11	3.3	0.004	0.60	1.0	0.04	13.83	0.00	2.237	4.93	0.80	4.5	95.5	0.0	-0.58	0.67	0.83	3.30	3.3	0.003	0.58	0.0	0.04	15.70	0.00	2.307	3.49	1.03	5.0	95.0	0.0	0.19	0.92	0.71	0.87	3.04	8532	1122	6	0	1	0	0	logfile
✔	8WC9	37435	2025-02-12	2023-09-11	3.2	3.47	3.29	3.5	0.007	0.91	3.0	0.06	13.81	0.01	2.205	9.72	1.16	5.5	94.5	0.0	-0.70	0.65	0.83	3.84	3.5	0.003	0.59	0.0	0.04	15.53	0.00	2.512	4.40	1.51	3.8	96.2	0.0	0.09	0.96	0.62	0.83	3.00	8394	1107	6	0	1	0	0	logfile
✔	8U4P	41890	2025-02-13	2023-09-11	3.15	3.53	3.25	3.5	0.004	0.53	0.0	0.04	14.37	0.00	2.240	4.24	0.00	3.3	96.7	0.0	0.52	0.63	0.84	3.05	3.5	0.003	0.51	0.0	0.04	15.38	0.00	2.472	3.09	2.43	3.2	96.8	0.0	1.10	0.25	0.59	0.85	2.82	7006	892	5	0	2	0	0	logfile
✔	8U4R	41892	2025-02-11	2023-09-11	3.1	3.43	3.14	3.4	0.003	0.67	0.0	0.05	14.01	0.01	2.165	4.99	0.00	3.6	96.4	0.0	0.38	0.65	0.85	3.13	3.4	0.005	0.62	0.0	0.04	15.83	0.00	2.536	3.77	1.79	4.6	95.4	0.0	0.84	0.93	0.67	0.88	3.06	4107	513	4	0	1	0	0	logfile
✔	8WC6	37432	2025-02-13	2023-09-11	3.2	3.26	3.10	3.3	0.008	0.99	2.0	0.07	13.34	0.01	2.130	8.47	1.10	5.1	94.9	0.0	-0.22	0.72	0.84	3.41	3.3	0.004	0.62	0.0	0.04	15.09	0.00	2.581	2.82	1.10	4.2	95.8	0.0	0.55	0.96	0.72	0.87	3.19	9183	1241	7	0	1	0	0	logfile
✔	8WC3	37429	2025-02-12	2023-09-11	3.0	3.02	2.90	3.0	0.006	0.96	2.0	0.07	13.97	0.01	1.356	8.37	1.40	5.2	94.8	0.0	-1.08	0.66	0.73	2.72	3.1	0.002	0.58	0.0	0.04	15.99	0.00	2.527	4.76	1.75	3.5	96.5	0.0	0.68	0.44	0.67	0.83	2.06	8418	1119	6	0	1	0	0	logfile
✔	8U4X	41903	2025-02-12	2023-09-11	2.81	2.24	2.84	2.0	0.002	0.56	0.0	0.04	17.69	0.00	2.032	9.77	2.11	2.7	97.3	0.0	0.85	0.78	0.79	1.88	2.1	0.004	0.65	0.0	0.04	18.24	0.01	2.483	8.87	2.81	3.1	96.9	0.0	0.52	0.37	0.79	0.80	2.26	7873	999	4	0	2	0	0	logfile
✔	8QHS	18416	2025-02-11	2023-09-10	2.3	2.47	2.33	2.4	0.006	0.68	0.0	0.05	17.61	0.00	2.089	5.84	6.56	1.3	98.7	0.0	-0.18	0.40	0.89	6.91	2.4	0.003	0.48	0.0	0.04	17.09	0.00	2.524	4.98	1.48	1.2	98.8	0.0	1.25	0.35	0.40	0.90	6.37	6212	785	10	0	0	337	0	logfile
✔	8WBX	37426	2025-02-12	2023-09-10	3.23	3.53	3.23	3.5	0.003	0.66	0.0	0.04	16.96	0.00	2.305	10.08	0.38	1.6	98.4	0.0	1.77	0.48	0.63	1.04	3.5	0.003	0.64	0.0	0.04	16.24	0.00	2.562	11.16	4.66	2.9	97.1	0.0	1.22	0.58	0.49	0.66	1.44	7331	934	3	0	1	0	0	logfile
✘	8WBG	37424	2025-02-15	2023-09-09	3.2	3.51	3.33	3.6	0.003	0.58	0.0	0.04	13.02	0.00	2.197	6.61	0.17	5.0	94.9	0.1	-1.10	0.64	0.77	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10854	1357	4	0	0	0	0	logfile
✔	8WBH	37425	2025-02-14	2023-09-09	3.2	3.43	3.24	3.4	0.003	0.54	0.0	0.04	11.71	0.00	2.203	6.68	0.00	6.0	93.8	0.2	-1.76	0.73	0.83	2.55	3.4	0.003	0.65	0.0	0.04	15.72	0.00	2.494	5.74	3.26	6.9	93.0	0.2	-1.65	1.12	0.76	0.86	2.41	10284	1293	4	0	0	0	0	logfile
✔	8WBA	37418	2025-02-13	2023-09-09	3.1	3.27	3.07	3.3	0.002	0.54	0.0	0.04	16.65	0.00	2.289	9.38	0.32	1.6	98.4	0.0	1.56	0.62	0.79	2.30	3.3	0.003	0.56	0.0	0.04	16.92	0.00	2.582	9.04	4.38	2.2	97.8	0.0	1.76	0.25	0.60	0.80	2.19	8646	1106	3	0	2	0	0	logfile
✔	8WBB	37419	2025-02-11	2023-09-09	2.9	3.16	2.98	3.2	0.004	0.62	0.0	0.04	19.18	0.00	2.213	8.88	0.51	5.6	94.3	0.1	-1.79	0.66	0.87	2.29	3.2	0.005	0.66	0.0	0.05	19.41	0.00	2.513	4.02	3.37	6.6	93.4	0.0	-1.50	0.35	0.67	0.89	2.35	5449	689	2	0	0	0	0	logfile
✔	8WBC	37420	2025-02-14	2023-09-09	3.03	3.32	3.19	3.3	0.003	0.51	0.0	0.04	12.97	0.00	2.129	5.70	0.26	5.0	94.9	0.1	-1.39	0.64	0.85	3.17	3.3	0.004	0.55	0.0	0.04	15.51	0.00	2.530	4.30	1.22	4.8	95.2	0.0	-1.06	0.91	0.62	0.85	2.64	10549	1339	4	0	0	0	0	logfile
✘	8QHP	18415	2025-02-11	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6788	820	4	0	2	0	0	logfile
✔	8U3E	41859	2025-02-11	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.74	0.01	2.613	4.03	1.14	3.3	96.7	0.0	1.13	0.38	0.51	0.85	3.21	3338	427	1	0	0	0	0	logfile
✔	8U3D	41858	2025-02-11	2023-09-07	2.83	3.27	2.77	3.2	0.009	0.78	0.0	0.05	12.53	0.01	2.284	5.37	0.00	5.0	95.0	0.0	-2.36	0.56	0.87	3.83	3.2	0.003	0.59	0.0	0.04	14.52	0.01	2.610	5.37	1.70	4.0	96.0	0.0	1.67	0.91	0.54	0.87	3.21	3338	427	1	0	0	0	0	logfile

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