Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U3G	41861	2025-02-11	2023-09-07	3.42	3.86	3.14	3.8	0.006	0.73	0.0	0.04	13.98	0.00	2.209	8.90	0.00	6.9	93.1	0.0	-3.18	0.48	0.82	2.51	3.8	0.004	0.66	0.0	0.04	15.74	0.01	2.423	8.46	3.11	5.7	94.3	0.0	0.27	1.23	0.40	0.78	2.42	3359	429	2	0	1	0	0	logfile
✔	8U3D	41858	2025-02-11	2023-09-07	2.83	3.27	2.77	3.2	0.009	0.78	0.0	0.05	12.53	0.01	2.284	5.37	0.00	5.0	95.0	0.0	-2.36	0.56	0.87	3.83	3.2	0.003	0.59	0.0	0.04	14.52	0.01	2.610	5.37	1.70	4.0	96.0	0.0	1.67	0.91	0.54	0.87	3.21	3338	427	1	0	0	0	0	logfile
✔	8U3E	41859	2025-02-11	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.74	0.01	2.613	4.03	1.14	3.3	96.7	0.0	1.13	0.38	0.51	0.85	3.21	3338	427	1	0	0	0	0	logfile
✔	8WA3	37390	2025-02-12	2023-09-06	2.86	3.76	2.88	3.5	0.003	0.65	0.0	0.04	14.06	0.00	2.090	9.53	1.03	5.1	94.9	0.0	0.71	0.65	0.80	1.97	3.5	0.003	0.72	0.0	0.05	16.65	0.00	2.493	8.79	2.40	4.8	95.2	0.0	0.64	1.61	0.63	0.79	1.90	8163	1031	5	0	0	0	0	logfile
✔	8W9T	37381	2025-02-11	2023-09-05	2.6	2.34	2.82	2.7	0.005	0.60	0.0	0.04	12.30	0.00	2.090	8.43	0.00	1.7	98.1	0.2	-1.88	0.54	0.80	3.36	2.7	0.002	0.51	0.0	0.04	14.27	0.00	2.624	6.34	1.20	2.1	97.9	0.0	2.85	1.00	0.53	0.80	3.47	6574	852	6	0	2	4	0	logfile
✔	8QGT	18390	2025-02-14	2023-09-05	2.8	2.87	2.76	2.8	0.004	0.56	0.0	0.04	16.98	0.00	2.214	7.89	0.88	3.1	96.9	0.0	0.98	0.78	0.83	2.93	2.8	0.003	0.54	0.0	0.04	17.59	0.00	2.393	5.62	2.11	2.9	97.1	0.0	1.42	0.80	0.79	0.88	3.40	10635	1289	2	12	0	0	0	logfile
✔	8W9V	37382	2025-02-11	2023-09-05	2.9	2.87	2.95	3.0	0.003	0.48	0.0	0.04	14.07	0.00	2.231	5.07	0.93	1.8	98.2	0.0	1.62	0.61	0.85	3.43	3.0	0.003	0.49	0.0	0.04	14.58	0.00	2.598	5.74	2.67	1.3	98.7	0.0	2.62	0.24	0.59	0.84	3.39	6574	852	4	0	6	0	0	logfile
✔	8W9A	37362	2025-02-14	2023-09-05	2.7	2.81	2.62	2.8	0.008	0.80	0.0	0.05	10.21	0.01	2.156	13.98	0.18	5.4	94.6	0.0	-4.40	0.70	0.83	5.06	2.8	0.004	0.68	0.0	0.05	15.38	0.00	2.512	4.58	1.93	4.1	95.9	0.0	-0.27	0.93	0.70	0.87	3.62	10289	1245	3	0	1	2	0	logfile
✔	8W9o	37377	2025-02-11	2023-09-05	2.8	2.67	2.80	2.8	0.005	0.54	0.0	0.04	15.90	0.00	2.217	8.65	2.31	4.0	96.0	0.0	0.95	0.59	0.82	3.45	2.9	0.003	0.51	0.0	0.04	15.97	0.00	2.471	7.86	2.19	3.0	97.0	0.0	1.92	0.34	0.58	0.80	2.65	6862	854	4	0	4	0	0	logfile
✔	8W9B	37363	2025-02-14	2023-09-05	3.0	3.09	2.88	3.1	0.004	0.76	0.0	0.05	10.61	0.00	2.078	21.63	0.35	6.8	93.2	0.1	-5.57	0.66	0.76	3.50	3.1	0.003	0.67	0.0	0.05	16.63	0.00	2.409	6.61	2.64	5.4	94.5	0.1	-1.80	1.03	0.68	0.80	2.51	10245	1242	3	0	1	0	0	logfile
✔	8W9N	37376	2025-02-11	2023-09-05	2.7	2.62	2.70	2.8	0.004	0.59	0.0	0.04	14.68	0.00	2.189	8.29	0.64	3.4	96.4	0.1	1.27	0.63	0.86	3.23	2.8	0.003	0.51	0.0	0.04	15.33	0.00	2.530	6.78	1.41	2.6	97.3	0.1	2.85	0.98	0.63	0.85	2.63	6860	854	4	0	2	0	0	logfile
✔	8QG0	18386	2025-02-11	2023-09-05	3.43	3.78	3.53	3.8	0.004	0.73	2.0	0.05	17.66	0.00	2.198	21.24	0.50	6.4	93.6	0.0	-1.84	0.65	0.68	1.62	3.8	0.003	0.69	0.0	0.05	19.37	0.00	2.494	15.09	2.82	3.8	96.2	0.0	-1.35	0.45	0.63	0.68	1.05	6080	656	4	34	0	0	0	logfile
✔	8W8S	37358	2025-02-10	2023-09-04	3.3	4.07	2.88	3.9	0.007	0.89	0.0	0.05	16.08	0.01	2.310	8.96	1.64	4.0	96.0	0.0	1.56	0.57	0.81	1.74	3.9	0.003	0.59	0.0	0.04	16.47	0.00	2.485	3.28	0.41	2.9	97.1	0.0	2.71	0.30	0.57	0.81	1.86	2265	281	2	0	2	0	0	logfile
✘	8W8Q	37356	2025-02-12	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8168	1044	5	0	0	0	0	logfile
✔	8W8R	37357	2025-02-13	2023-09-04	3.3	3.13	3.14	3.2	0.006	0.85	0.0	0.06	16.67	0.00	2.227	7.59	1.64	5.2	94.8	0.0	-0.20	0.68	0.85	2.57	3.2	0.002	0.54	0.0	0.04	16.99	0.00	2.498	2.96	3.49	3.7	96.3	0.0	0.52	0.27	0.65	0.85	2.45	9018	1142	6	0	2	0	0	logfile
✔	8U1U	41829	2025-02-14	2023-09-02	3.1	3.41	—	3.3	0.004	0.71	0.0	0.05	13.15	0.01	2.003	6.13	0.00	3.5	96.5	0.0	0.26	0.72	0.82	3.41	3.3	0.005	0.66	0.0	0.04	15.24	0.00	2.447	8.24	2.10	3.9	96.1	0.0	0.18	0.46	0.73	0.85	2.76	9507	1206	6	0	1	0	0	logfile
✔	8U1N	41818	2025-02-12	2023-09-01	3.9	4.61	3.85	4.1	0.005	1.17	0.0	0.05	17.98	0.00	1.883	17.84	0.00	4.5	95.5	0.0	-1.18	0.91	0.78	1.29	4.1	0.003	0.66	0.0	0.04	18.28	0.00	1.796	12.55	1.79	4.4	95.6	0.0	-1.00	1.00	0.91	0.79	1.30	8164	994	4	0	4	0	0	logfile
✔	8W8A	37350	2025-02-12	2023-09-01	2.8	3.15	2.86	3.1	0.005	0.71	1.0	0.05	12.99	0.00	2.280	5.44	0.89	2.8	97.2	0.0	0.81	0.63	0.84	4.00	3.1	0.003	0.56	0.0	0.04	15.70	0.00	2.520	6.11	1.79	2.6	97.4	0.0	1.14	0.38	0.62	0.85	3.66	8260	1045	6	0	1	1	0	logfile
✔	8U1M	41817	2025-02-12	2023-09-01	3.5	5.34	3.49	3.4	0.005	1.17	0.0	0.05	16.52	0.00	1.781	23.45	0.35	5.0	95.0	0.0	-1.18	0.92	0.72	0.71	3.0	0.004	0.74	0.0	0.04	17.36	0.00	1.790	23.13	3.48	6.3	93.7	0.0	-1.50	0.48	0.93	0.76	0.87	7882	957	4	0	4	0	0	logfile
✔	8U1R	41825	2025-02-13	2023-09-01	3.6	3.81	3.64	3.8	0.005	0.77	0.0	0.05	15.16	0.00	2.182	5.32	1.05	3.3	96.7	0.0	-0.29	0.77	0.84	2.91	3.8	0.003	0.60	0.0	0.04	15.86	0.00	2.482	5.75	1.91	4.0	96.0	0.0	0.87	1.01	0.78	0.84	2.36	9126	1197	3	0	0	0	0	logfile

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