Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U1N	41818	2025-02-12	2023-09-01	3.9	4.61	3.85	4.1	0.005	1.17	0.0	0.05	17.98	0.00	1.883	17.84	0.00	4.5	95.5	0.0	-1.18	0.91	0.78	1.29	4.1	0.003	0.66	0.0	0.04	18.28	0.00	1.796	12.55	1.79	4.4	95.6	0.0	-1.00	1.00	0.91	0.79	1.30	8164	994	4	0	4	0	0	logfile
✔	8U1M	41817	2025-02-12	2023-09-01	3.5	5.34	3.49	3.4	0.005	1.17	0.0	0.05	16.52	0.00	1.781	23.45	0.35	5.0	95.0	0.0	-1.18	0.92	0.72	0.71	3.0	0.004	0.74	0.0	0.04	17.36	0.00	1.790	23.13	3.48	6.3	93.7	0.0	-1.50	0.48	0.93	0.76	0.87	7882	957	4	0	4	0	0	logfile
✔	8W89	37349	2025-02-12	2023-09-01	3.0	3.35	3.11	3.3	0.006	0.83	0.0	0.06	13.33	0.00	2.334	4.90	0.90	3.4	96.6	0.0	0.85	0.63	0.81	2.98	3.3	0.003	0.62	0.0	0.04	15.96	0.00	2.410	7.35	2.02	2.0	98.0	0.0	0.71	1.27	0.60	0.82	2.64	8230	1043	6	0	1	1	0	logfile
✔	8W8B	37351	2025-02-13	2023-09-01	3.0	3.35	3.12	3.3	0.005	0.58	0.0	0.04	14.50	0.00	2.063	4.34	0.54	2.3	97.7	0.0	1.35	0.67	0.86	3.99	3.3	0.006	0.65	0.0	0.04	15.40	0.00	2.461	5.43	1.93	3.3	96.7	0.0	1.06	0.30	0.63	0.86	3.43	8734	1096	6	0	7	0	0	logfile
✔	8W8A	37350	2025-02-12	2023-09-01	2.8	3.15	2.86	3.1	0.005	0.71	1.0	0.05	12.99	0.00	2.280	5.44	0.89	2.8	97.2	0.0	0.81	0.63	0.84	4.00	3.1	0.003	0.56	0.0	0.04	15.70	0.00	2.520	6.11	1.79	2.6	97.4	0.0	1.14	0.38	0.62	0.85	3.66	8260	1045	6	0	1	1	0	logfile
✔	8U1D	41810	2025-02-11	2023-08-31	4.25	4.46	4.28	4.4	0.006	1.05	0.0	0.06	13.61	0.01	2.280	9.04	0.52	7.9	91.7	0.3	-2.32	0.68	0.73	—	4.4	0.003	0.66	0.0	0.04	13.23	0.00	2.530	7.65	0.00	4.8	95.0	0.2	-1.32	1.63	0.71	0.75	—	5109	650	4	0	1	0	0	logfile
✔	8U1B	41806	2025-02-11	2023-08-31	3.7	3.94	3.68	3.9	0.003	0.75	1.0	0.05	17.97	0.00	2.178	14.05	0.21	8.1	91.4	0.5	-1.52	0.69	0.74	1.79	3.9	0.003	0.68	0.0	0.04	18.58	0.00	2.544	10.54	5.61	7.5	92.1	0.3	-1.58	0.34	0.70	0.74	1.52	4584	611	2	0	0	0	0	logfile
✔	8W77	37336	2025-02-10	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.003	0.55	0.0	0.04	11.07	0.00	2.638	2.15	2.22	2.0	98.0	0.0	3.96	0.87	0.57	0.78	2.98	1601	260	1	0	0	0	0	logfile
✔	8U0T	41784	2025-02-12	2023-08-29	3.2	3.49	3.24	3.5	0.013	1.40	2.0	0.09	10.78	0.01	2.291	1.69	0.47	2.7	97.1	0.1	-1.05	0.70	0.79	4.40	3.5	0.003	0.61	0.0	0.04	13.69	0.00	2.429	2.85	1.71	2.1	97.9	0.0	0.92	0.59	0.70	0.83	3.20	6761	849	4	0	10	0	0	logfile
✔	8U0J	41781	2025-02-11	2023-08-29	3.1	3.50	3.09	3.4	0.008	0.92	0.0	0.05	20.28	0.01	2.170	10.01	0.00	8.0	92.0	0.0	-1.07	0.45	0.72	3.27	3.4	0.003	0.59	0.0	0.04	21.16	0.00	2.452	9.27	1.18	6.2	93.8	0.0	0.25	0.97	0.44	0.72	2.13	5657	569	5	48	1	0	0	logfile
✔	8W6N	37329	2025-02-12	2023-08-29	3.2	3.38	3.23	3.4	0.004	0.95	0.0	0.05	13.43	0.01	2.310	3.10	0.12	7.1	92.8	0.1	-7.03	0.66	0.84	2.74	3.4	0.003	0.69	0.0	0.04	15.20	0.01	2.324	5.75	2.99	5.9	94.1	0.0	-1.52	0.47	0.67	0.86	2.34	7616	975	4	0	3	0	0	logfile
✔	8W6T	37332	2025-02-12	2023-08-29	3.0	3.16	2.98	3.2	0.006	1.03	1.0	0.07	12.77	0.01	2.247	4.01	0.72	6.3	93.6	0.1	-5.55	0.64	0.81	2.57	3.2	0.003	0.66	0.0	0.04	15.18	0.00	2.522	5.10	1.56	5.2	94.8	0.0	-0.30	1.23	0.63	0.81	2.89	7605	975	2	0	0	0	0	logfile
✔	8W6J	37325	2025-02-13	2023-08-29	3.4	3.85	3.59	3.8	0.006	1.25	4.0	0.06	14.81	0.01	2.303	6.61	0.46	8.0	91.6	0.4	-2.91	0.69	0.77	1.54	3.8	0.004	0.76	0.0	0.04	16.66	0.00	2.394	10.42	4.06	7.2	92.6	0.3	-0.38	0.52	0.71	0.81	1.58	8553	1127	7	0	2	0	0	logfile
✔	8W6i	37324	2025-02-12	2023-08-29	3.7	4.25	3.88	4.1	0.004	1.10	0.0	0.06	13.87	0.01	2.308	5.93	0.13	5.1	94.6	0.3	-3.33	0.69	0.78	0.81	4.1	0.003	0.81	0.0	0.05	16.12	0.00	2.253	12.97	2.52	5.1	94.8	0.1	-0.55	0.50	0.70	0.79	0.75	7750	1021	6	0	2	0	0	logfile
✔	8W6o	37330	2025-02-12	2023-08-29	2.9	3.07	2.91	3.1	0.005	1.04	0.0	0.05	13.10	0.01	2.246	2.60	0.13	6.6	93.0	0.5	-4.81	0.68	0.82	3.03	3.1	0.003	0.71	0.0	0.04	14.26	0.01	2.228	6.78	1.91	7.1	92.8	0.1	0.12	0.47	0.68	0.83	2.05	7147	907	4	0	6	0	0	logfile
✔	8U0W	41790	2025-02-13	2023-08-29	2.99	3.75	3.16	3.5	0.007	0.76	0.0	0.05	14.85	0.00	2.091	8.29	0.00	3.5	96.3	0.2	-0.58	0.83	0.83	3.50	3.5	0.003	0.58	0.0	0.04	16.93	0.00	2.466	5.84	0.72	2.3	97.5	0.2	1.77	3.72	0.76	0.80	2.44	9086	1099	2	12	0	0	0	logfile
✔	8QCY	18337	2025-02-10	2023-08-28	2.9	3.36	3.07	3.3	0.004	0.58	0.0	0.04	11.88	0.00	2.245	5.86	0.00	1.4	98.6	0.0	0.40	0.55	0.78	3.99	3.3	0.003	0.64	0.0	0.04	15.64	0.00	2.582	6.01	2.84	1.9	98.1	0.0	2.30	1.25	0.48	0.74	2.71	3273	421	1	0	0	0	0	logfile
✔	8QCP	18331	2025-02-12	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.003	0.60	0.0	0.05	15.71	0.00	2.484	1.00	2.29	3.9	96.1	0.0	-2.10	0.96	0.35	0.86	5.41	7002	453	6	0	0	0	3567	logfile
✔	8QD0	18339	2025-02-10	2023-08-28	2.8	3.36	2.79	3.2	0.003	0.63	0.0	0.04	15.30	0.01	2.337	5.83	0.00	1.0	99.0	0.0	1.25	0.61	0.81	3.08	3.2	0.003	0.65	0.0	0.04	16.59	0.00	2.467	7.77	1.70	1.2	98.8	0.0	2.33	1.72	0.51	0.75	2.69	3290	422	2	0	1	0	0	logfile
✔	8QCS	18334	2025-02-10	2023-08-28	2.9	3.25	2.95	3.2	0.003	0.57	0.0	0.04	15.23	0.00	2.301	7.00	0.00	2.7	97.3	0.0	0.62	0.56	0.82	3.12	3.2	0.003	0.63	0.0	0.04	16.54	0.00	2.536	6.39	1.70	3.1	96.9	0.0	2.39	1.20	0.52	0.79	2.65	3241	417	1	0	0	0	0	logfile

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