Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QCP	18331	2025-02-12	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.003	0.60	0.0	0.05	15.71	0.00	2.484	1.00	2.29	3.9	96.1	0.0	-2.10	0.96	0.35	0.86	5.41	7002	453	6	0	0	0	3567	logfile
✔	8W6D	37321	2025-02-12	2023-08-28	2.5	2.33	2.45	2.3	0.009	1.08	0.0	0.06	13.67	0.01	2.391	1.35	0.23	5.0	94.9	0.2	-2.77	0.67	0.86	3.20	2.3	0.003	0.65	0.0	0.04	15.35	0.01	2.294	3.77	2.05	4.5	95.5	0.0	1.78	1.15	0.67	0.87	2.94	8304	1058	4	0	6	0	0	logfile
✔	8QCT	18335	2025-02-10	2023-08-28	2.6	2.36	2.57	2.6	0.003	0.49	0.0	0.04	15.84	0.00	2.202	7.25	0.00	1.9	98.1	0.0	0.55	0.69	0.84	3.34	2.6	0.003	0.53	0.0	0.04	16.22	0.00	2.416	6.65	2.54	2.4	97.6	0.0	2.42	0.38	0.68	0.83	3.16	3259	418	2	0	1	0	0	logfile
✔	8W6C	37320	2025-02-12	2023-08-28	2.7	2.82	2.69	2.8	0.007	1.05	0.0	0.05	14.78	0.01	2.163	5.79	1.13	4.8	95.2	0.0	-3.18	0.68	0.86	2.60	2.8	0.003	0.65	0.0	0.04	15.98	0.01	2.324	4.04	2.72	4.5	95.5	0.0	1.79	0.40	0.68	0.87	1.75	8360	1060	6	0	10	2	0	logfile
✔	8QCR	18333	2025-02-10	2023-08-28	2.75	2.70	2.59	2.9	0.011	1.78	0.0	0.08	9.60	0.01	2.505	0.00	0.00	3.0	97.0	0.0	-1.85	0.33	0.79	7.24	2.9	0.003	0.55	0.0	0.05	15.88	0.00	2.505	2.54	0.56	1.0	99.0	0.0	-0.50	1.38	0.40	0.88	7.24	3153	204	3	0	0	0	1608	logfile
✔	8QCS	18334	2025-02-10	2023-08-28	2.9	3.25	2.95	3.2	0.003	0.57	0.0	0.04	15.23	0.00	2.301	7.00	0.00	2.7	97.3	0.0	0.62	0.56	0.82	3.12	3.2	0.003	0.63	0.0	0.04	16.54	0.00	2.536	6.39	1.70	3.1	96.9	0.0	2.39	1.20	0.52	0.79	2.65	3241	417	1	0	0	0	0	logfile
✔	8QCY	18337	2025-02-10	2023-08-28	2.9	3.36	3.07	3.3	0.004	0.58	0.0	0.04	11.88	0.00	2.245	5.86	0.00	1.4	98.6	0.0	0.40	0.55	0.78	3.99	3.3	0.003	0.64	0.0	0.04	15.64	0.00	2.582	6.01	2.84	1.9	98.1	0.0	2.30	1.25	0.48	0.74	2.71	3273	421	1	0	0	0	0	logfile
✔	8TZV	41770	2025-02-11	2023-08-28	2.8	3.84	3.03	3.4	0.001	0.40	0.0	0.04	7.77	0.00	2.199	6.62	0.47	1.0	99.0	0.0	0.07	0.80	0.73	1.36	3.5	0.003	0.74	0.0	0.05	14.08	0.00	2.567	11.46	1.89	2.8	97.2	0.0	-0.16	3.15	0.82	0.76	1.65	5680	696	4	0	2	0	0	logfile
✔	8W6H	37323	2025-02-12	2023-08-28	3.1	3.21	3.03	3.2	0.011	1.23	1.0	0.07	13.79	0.01	2.205	4.85	0.76	9.5	90.3	0.2	-7.00	0.70	0.85	2.74	3.2	0.003	0.73	0.0	0.04	14.48	0.00	2.241	4.91	3.15	5.5	94.5	0.0	-0.39	0.46	0.69	0.86	1.64	7268	923	4	0	6	0	0	logfile
✔	8QCX	18336	2025-02-10	2023-08-28	3.1	3.36	3.25	3.4	0.003	0.50	0.0	0.04	13.43	0.01	2.275	4.35	0.00	1.0	99.0	0.0	1.06	0.57	0.81	3.18	3.4	0.003	0.56	0.0	0.04	15.67	0.00	2.635	6.29	1.13	1.2	98.8	0.0	3.08	1.22	0.52	0.78	2.45	3283	422	1	0	0	0	0	logfile
✔	8W5J	37294	2025-02-12	2023-08-27	4.4	4.87	4.36	4.4	0.002	0.63	0.0	0.04	12.49	0.01	2.174	13.63	0.00	2.1	97.9	0.0	1.07	0.56	0.79	—	4.4	0.006	0.75	0.0	0.04	13.15	0.00	2.391	16.17	0.00	3.5	96.5	0.0	0.54	0.46	0.57	0.81	—	7356	942	11	0	1	0	0	logfile
✔	8TZo	41764	2025-02-13	2023-08-27	3.1	3.45	3.14	3.4	0.004	0.70	0.0	0.04	17.02	0.00	2.252	5.32	0.22	3.1	96.9	0.0	0.82	0.62	0.85	2.93	3.4	0.003	0.53	0.0	0.04	15.25	0.00	2.425	4.28	1.72	3.3	96.7	0.0	1.20	0.27	0.61	0.84	2.68	8737	1070	7	0	10	0	0	logfile
✔	8TZS	41768	2025-02-11	2023-08-27	3.84	4.01	3.90	4.0	0.005	0.87	0.0	0.05	15.83	0.01	2.170	9.05	0.24	3.6	96.4	0.0	0.65	0.65	0.77	1.99	4.0	0.003	0.73	0.0	0.04	16.74	0.00	2.570	8.28	4.02	3.6	96.4	0.0	1.56	0.95	0.65	0.76	0.83	3914	480	1	0	0	0	0	logfile
✔	8TZR	41767	2025-02-13	2023-08-27	3.5	4.05	3.67	4.0	0.006	0.84	0.0	0.05	16.98	0.01	2.229	6.61	0.53	4.5	95.5	0.0	-0.18	0.55	0.74	1.80	4.0	0.004	0.68	0.0	0.04	15.95	0.00	2.439	8.33	2.45	4.4	95.6	0.0	0.25	0.94	0.56	0.76	1.72	8821	1079	6	0	9	0	0	logfile
✔	8W5K	37295	2025-02-12	2023-08-27	3.6	3.84	3.46	3.8	0.004	0.72	0.0	0.04	17.12	0.00	2.076	8.86	0.88	2.5	97.5	0.0	0.90	0.66	0.78	2.64	3.8	0.004	0.71	0.0	0.04	17.51	0.00	2.509	7.36	5.16	2.8	97.2	0.0	0.89	1.15	0.65	0.75	2.42	7379	942	11	0	1	0	0	logfile
✔	8TZP	41765	2025-02-12	2023-08-27	3.23	3.70	3.38	3.6	0.004	0.73	0.0	0.04	15.23	0.01	1.341	5.58	0.27	2.8	97.2	0.0	1.16	0.67	0.84	2.54	3.6	0.003	0.57	0.0	0.04	15.80	0.00	2.514	5.22	3.23	3.9	96.1	0.0	1.15	0.90	0.67	0.85	2.21	6920	859	5	0	2	0	0	logfile
✔	8TZQ	41766	2025-02-13	2023-08-27	3.2	3.93	3.21	3.7	0.003	0.55	0.0	0.04	9.08	0.01	2.226	6.68	0.43	2.3	97.7	0.0	1.04	0.73	0.82	3.31	3.7	0.003	0.64	0.0	0.04	13.79	0.00	2.540	6.50	2.05	2.9	97.1	0.0	0.87	0.83	0.72	0.84	2.52	8618	1117	6	0	1	0	0	logfile
✔	8TZB	41753	2025-02-12	2023-08-26	3.1	2.37	—	3.2	0.006	0.65	0.0	0.04	14.68	0.01	2.177	10.41	0.30	5.7	94.1	0.1	-0.33	0.76	0.73	2.27	3.2	0.003	0.55	0.0	0.04	15.25	0.00	2.396	8.62	1.95	5.0	94.9	0.1	-0.21	0.17	0.75	0.72	2.02	7283	1012	3	0	1	0	0	logfile
✔	8TYW	41729	2025-02-12	2023-08-26	3.43	2.47	3.40	2.2	0.005	0.93	0.0	0.05	18.20	0.01	2.297	7.31	0.59	3.5	96.5	0.0	-1.15	0.76	0.78	1.48	2.2	0.003	0.63	0.0	0.04	18.63	0.00	2.539	9.28	6.27	2.6	97.4	0.0	0.74	0.32	0.76	0.79	1.57	7938	1026	5	0	0	0	0	logfile
✔	8TZE	41756	2025-02-11	2023-08-26	2.9	3.19	2.95	3.2	0.007	0.76	0.0	0.05	14.56	0.02	2.140	7.97	1.30	3.8	95.9	0.3	0.15	0.49	0.75	3.59	3.2	0.004	0.57	0.0	0.04	15.20	0.00	2.527	5.74	1.59	3.6	96.3	0.1	0.20	0.30	0.50	0.76	3.57	6255	787	2	0	1	0	0	logfile

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