Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TYQ	41728	2025-02-13	2023-08-25	2.99	2.37	—	3.2	0.007	0.98	3.0	0.05	14.46	0.01	2.195	13.81	0.53	3.7	96.1	0.2	-0.16	0.71	0.64	1.66	3.2	0.003	0.74	0.0	0.05	16.57	0.00	2.355	10.78	1.38	3.5	96.5	0.0	-0.13	1.22	0.77	0.76	2.05	8529	1069	3	0	1	0	0	logfile
✔	8QC1	18325	2025-02-13	2023-08-25	2.5	2.43	2.49	2.5	0.004	0.57	0.0	0.04	18.50	0.00	1.851	2.92	0.45	2.1	97.9	0.0	0.76	0.71	0.90	5.56	2.5	0.003	0.53	0.0	0.04	17.58	0.00	2.250	4.19	1.22	1.6	98.4	0.0	2.16	0.74	0.71	0.91	3.84	9431	1118	6	0	15	115	0	logfile
✔	8TYE	41715	2025-02-14	2023-08-25	3.8	4.08	3.83	4.0	0.006	1.02	0.0	0.06	16.15	0.02	2.202	5.86	0.00	3.7	96.3	0.0	-1.26	0.70	0.76	2.53	4.0	0.004	0.84	0.0	0.05	15.32	0.00	2.443	11.39	2.00	4.9	95.0	0.1	-0.70	0.57	0.72	0.79	2.34	9921	994	33	0	279	0	0	logfile
✔	8TYC	41713	2025-02-14	2023-08-24	3.3	3.96	3.46	3.7	0.021	1.75	0.0	0.15	16.24	0.02	2.365	2.90	0.00	3.1	96.9	0.0	0.44	0.75	0.78	2.83	3.7	0.005	0.93	0.0	0.05	13.99	0.00	2.199	9.42	2.21	3.4	96.6	0.0	0.48	1.67	0.74	0.82	2.82	10628	1058	39	0	295	0	0	logfile
✔	8QBN	18316	2025-02-12	2023-08-24	3.2	3.27	3.06	3.2	0.004	0.59	0.0	0.05	14.30	0.00	2.206	4.37	0.27	4.3	95.7	0.0	-0.65	0.84	0.87	3.32	3.3	0.002	0.49	0.0	0.04	15.21	0.00	2.581	2.84	1.06	4.2	95.8	0.0	-0.22	0.20	0.85	0.89	3.17	7021	897	6	0	3	0	0	logfile
✔	8TY6	41711	2025-02-14	2023-08-24	3.3	3.52	3.45	3.5	0.002	0.44	0.0	0.04	11.55	0.00	2.144	4.89	2.71	2.1	97.9	0.0	2.36	0.74	0.81	2.58	3.5	0.003	0.60	0.0	0.04	15.33	0.01	2.478	6.09	1.74	1.8	98.2	0.0	2.21	0.62	0.72	0.80	1.96	9678	1260	6	0	0	0	0	logfile
✔	8TXQ	41703	2025-02-13	2023-08-24	3.4	3.60	3.38	3.7	0.004	0.69	0.0	0.05	15.34	0.00	2.010	6.55	0.41	10.2	89.8	0.0	-2.70	0.64	0.72	2.81	3.7	0.004	0.64	0.0	0.05	15.80	0.00	2.292	6.78	4.08	12.2	87.8	0.0	-2.68	0.36	0.64	0.75	2.66	8851	610	4	0	0	0	4305	logfile
✔	8W4A	37264	2025-02-14	2023-08-23	2.69	2.93	2.74	3.0	0.006	0.57	0.0	0.04	14.93	0.00	2.212	5.31	0.00	1.3	98.7	0.0	1.30	0.64	0.87	4.21	3.0	0.003	0.51	0.0	0.04	15.44	0.00	2.546	4.37	0.87	1.3	98.7	0.0	2.23	0.24	0.68	0.88	3.68	9588	1066	8	0	86	0	0	logfile
✔	8QAU	18304	2025-02-14	2023-08-23	3.54	4.46	3.61	4.1	0.004	0.69	0.0	0.04	17.84	0.00	1.980	12.57	0.00	3.5	96.5	0.1	0.50	0.56	0.64	1.74	4.1	0.003	0.73	0.0	0.04	17.23	0.00	1.918	12.05	1.85	3.3	96.6	0.1	1.58	0.74	0.61	0.76	1.39	10137	1347	8	1	3	0	0	logfile
✔	8QAT	18302	2025-02-12	2023-08-23	3.2	2.97	3.18	3.4	0.005	1.03	0.0	0.05	16.20	0.01	2.192	3.47	0.35	1.9	98.0	0.1	-1.94	0.68	0.77	2.23	3.3	0.003	0.63	0.0	0.04	17.05	0.00	2.348	6.29	2.71	1.9	98.0	0.1	2.16	2.42	0.68	0.77	1.56	7758	970	4	0	0	0	0	logfile
✔	8KiC	37257	2025-02-13	2023-08-23	2.5	3.35	2.69	3.1	0.005	0.82	0.0	0.05	17.67	0.01	2.171	5.51	3.54	2.3	97.3	0.4	-0.24	0.77	0.75	2.14	3.1	0.003	0.65	0.0	0.05	17.07	0.00	2.536	4.07	2.65	2.3	97.5	0.3	0.78	1.08	0.72	0.82	1.90	8589	1168	9	0	20	0	0	logfile
✔	8QA4	18298	2025-02-12	2023-08-22	2.8	2.99	2.83	3.0	0.023	2.29	24.0	0.20	15.90	0.01	2.296	3.62	1.45	3.5	96.5	0.0	-2.38	0.63	0.78	3.60	3.0	0.003	0.63	0.0	0.04	17.92	0.00	2.414	6.84	1.21	2.6	97.4	0.0	0.07	1.56	0.60	0.80	2.75	7544	462	6	0	0	28	3724	logfile
✔	8TWi	41668	2025-02-12	2023-08-21	2.69	3.44	2.68	3.2	0.002	0.46	0.0	0.04	9.78	0.00	2.049	1.24	0.67	2.2	97.8	0.0	1.15	0.77	0.81	4.65	3.3	0.003	0.57	0.0	0.04	12.79	0.00	1.966	5.19	0.22	2.8	97.2	0.0	1.81	1.78	0.77	0.84	3.92	8096	510	4	0	2	0	4023	logfile
✔	8TWL	41670	2025-02-14	2023-08-21	2.7	2.90	2.72	2.9	0.003	0.50	0.0	0.04	16.84	0.00	2.155	11.06	2.34	1.4	98.6	0.0	1.43	0.60	0.83	3.85	2.9	0.002	0.50	0.0	0.04	17.01	0.00	2.534	8.88	3.51	2.1	97.9	0.0	1.65	0.30	0.64	0.86	3.98	10800	1372	8	0	0	328	0	logfile
✔	8KHD	37241	2025-02-11	2023-08-21	3.5	3.86	4.16	3.8	0.004	0.88	0.0	0.05	13.42	0.01	2.287	8.30	0.00	7.3	92.5	0.2	-1.39	0.52	0.71	1.83	3.8	0.004	0.77	0.0	0.04	15.38	0.00	2.379	10.76	3.64	8.5	91.3	0.2	-1.22	0.58	0.53	0.74	1.66	3337	434	4	0	1	0	0	logfile
✔	8KH5	37237	2025-02-12	2023-08-21	2.83	3.13	2.90	3.2	0.008	0.85	1.0	0.08	12.85	0.01	2.103	11.08	0.26	2.9	97.1	0.0	0.90	0.59	0.74	3.40	3.2	0.002	0.56	0.0	0.04	15.16	0.00	2.548	8.86	1.67	2.0	98.0	0.0	1.21	1.24	0.61	0.78	3.45	7838	1031	6	0	2	0	0	logfile
✔	8KH4	37236	2025-02-12	2023-08-21	3.1	3.38	3.16	3.4	0.009	1.01	9.0	0.08	14.02	0.01	2.049	16.56	0.40	2.8	97.2	0.0	0.62	0.59	0.72	2.53	3.4	0.003	0.62	0.0	0.04	15.30	0.00	2.500	9.31	1.75	1.8	98.2	0.0	1.10	1.16	0.63	0.76	2.03	7521	1001	6	0	1	0	0	logfile
✔	8TWM	41671	2025-02-14	2023-08-21	2.6	2.85	2.66	2.9	0.003	0.54	0.0	0.04	16.70	0.00	2.158	11.58	1.89	2.2	97.8	0.0	1.47	0.57	0.81	3.59	2.9	0.004	0.56	0.0	0.04	16.99	0.00	2.589	7.36	2.61	2.1	97.9	0.0	1.52	0.33	0.63	0.85	3.77	10800	1372	8	0	0	328	0	logfile
✔	8TWK	41669	2025-02-14	2023-08-21	2.6	2.88	2.70	2.9	0.003	0.51	0.0	0.04	16.48	0.00	2.140	10.30	2.34	1.8	98.2	0.0	1.70	0.57	0.81	4.57	2.9	0.003	0.54	0.0	0.04	16.80	0.00	2.588	5.60	1.89	1.8	98.2	0.0	1.56	0.31	0.63	0.85	4.94	10800	1372	8	0	0	328	0	logfile
✔	8Q9H	18281	2025-02-11	2023-08-20	2.18	2.03	2.10	2.2	0.011	1.73	0.0	0.08	10.93	0.01	2.517	0.00	0.00	2.8	97.2	0.0	-1.19	0.33	0.77	6.36	2.2	0.003	0.56	0.0	0.05	16.95	0.00	2.455	0.59	0.26	1.9	98.1	0.0	-1.77	1.83	0.41	0.86	6.16	6822	438	6	0	0	0	3480	logfile

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