Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q9K	18284	2025-02-11	2023-08-20	3.2	3.24	3.02	3.3	0.011	2.00	0.0	0.09	9.09	0.01	2.527	0.79	0.00	5.1	94.9	0.0	-1.94	0.39	0.82	6.44	3.2	0.003	0.53	0.0	0.05	14.25	0.00	2.541	2.22	2.26	3.8	96.2	0.0	-1.66	1.46	0.34	0.84	5.59	6306	408	6	0	0	0	3216	logfile
✔	8Q9E	18278	2025-02-11	2023-08-20	2.97	2.51	2.93	2.7	0.011	1.89	2.0	0.11	11.77	0.01	2.528	0.59	1.32	1.9	98.1	0.0	-1.47	0.25	0.73	5.90	2.7	0.003	0.61	0.0	0.05	17.74	0.00	2.490	1.33	0.79	1.7	98.3	0.0	-1.40	1.39	0.34	0.84	4.55	6768	432	6	0	0	0	3456	logfile
✔	8Q9B	18275	2025-02-12	2023-08-20	3.1	3.13	2.97	3.1	0.011	1.79	0.0	0.08	10.91	0.01	2.521	0.00	0.00	4.1	95.9	0.0	-1.61	0.35	0.78	6.63	3.1	0.002	0.49	0.0	0.05	14.12	0.00	2.614	1.28	1.01	1.8	98.2	0.0	-1.13	1.31	0.38	0.86	6.09	7032	450	6	0	0	0	3588	logfile
✔	8Q9F	18279	2025-02-11	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.63	0.0	0.05	16.14	0.00	2.429	2.04	0.28	2.2	97.8	0.0	-2.19	1.79	0.43	0.85	7.00	6390	414	6	0	0	0	3258	logfile
✔	8Q9J	18283	2025-02-11	2023-08-20	2.96	2.81	3.01	2.7	0.011	1.86	0.0	0.09	10.83	0.01	2.532	0.00	0.00	1.2	98.8	0.0	-1.24	0.26	0.75	6.29	2.9	0.003	0.57	0.0	0.05	15.82	0.00	2.485	1.91	1.56	2.3	97.7	0.0	-1.60	1.20	0.31	0.84	5.86	6822	438	6	0	0	0	3480	logfile
✔	8Q98	18271	2025-02-12	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.53	0.0	0.05	15.06	0.00	2.501	1.14	0.51	0.9	99.1	0.0	-0.39	1.18	0.43	0.90	7.96	7032	450	6	0	0	0	3588	logfile
✔	8Q99	18272	2025-02-11	2023-08-20	2.7	2.49	2.59	2.7	0.011	1.82	0.0	0.10	11.76	0.01	2.486	0.00	0.00	2.7	97.3	0.0	-2.40	0.42	0.84	5.68	2.7	0.003	0.60	0.0	0.05	14.68	0.00	2.557	1.66	1.08	0.5	99.5	0.0	-1.61	1.56	0.40	0.88	6.12	6642	426	6	0	0	0	3396	logfile
✔	8Q9G	18280	2025-02-11	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.005	0.66	0.0	0.05	16.87	0.00	2.482	1.61	1.56	2.3	97.7	0.0	-2.27	1.27	0.35	0.84	6.58	6822	438	6	0	0	0	3480	logfile
✔	8Q9C	18276	2025-02-11	2023-08-20	3.4	3.58	3.33	3.5	0.011	1.96	1.0	0.09	9.22	0.01	2.524	0.00	0.00	5.9	94.1	0.0	-2.98	0.33	0.78	5.62	3.5	0.005	0.70	0.0	0.05	13.88	0.00	2.605	4.84	1.26	3.4	96.6	0.0	-1.90	2.73	0.34	0.85	5.52	3444	450	6	0	0	0	0	logfile
✔	8Q9o	18287	2025-02-12	2023-08-20	3.1	3.14	2.95	3.1	0.012	1.87	0.0	0.09	11.25	0.01	2.518	0.28	3.03	3.0	97.0	0.0	-1.40	0.32	0.80	5.39	3.1	0.002	0.53	0.0	0.05	13.89	0.00	2.458	2.56	0.51	2.5	97.5	0.0	-1.11	3.53	0.32	0.82	5.15	7032	450	6	0	0	0	3588	logfile
✔	8Q9H	18281	2025-02-11	2023-08-20	2.18	2.03	2.10	2.2	0.011	1.73	0.0	0.08	10.93	0.01	2.517	0.00	0.00	2.8	97.2	0.0	-1.19	0.33	0.77	6.36	2.2	0.003	0.56	0.0	0.05	16.95	0.00	2.455	0.59	0.26	1.9	98.1	0.0	-1.77	1.83	0.41	0.86	6.16	6822	438	6	0	0	0	3480	logfile
✔	8Q97	18270	2025-02-11	2023-08-20	2.99	3.09	2.91	3.1	0.011	2.02	0.0	0.10	12.24	0.01	2.490	0.00	0.00	0.7	99.3	0.0	-2.45	0.41	0.79	4.66	3.1	0.003	0.75	0.0	0.05	15.95	0.00	2.473	3.02	0.81	2.7	97.3	0.0	-1.44	0.92	0.39	0.82	3.52	6642	426	6	0	0	0	3396	logfile
✔	8Q9M	18286	2025-02-12	2023-08-20	2.65	2.53	2.47	2.7	0.011	1.76	0.0	0.09	11.56	0.01	2.640	0.28	0.00	1.8	98.2	0.0	-1.02	0.33	0.79	6.36	2.6	0.003	0.54	0.0	0.05	16.12	0.00	2.504	0.71	1.01	0.9	99.1	0.0	-1.53	0.90	0.42	0.91	6.29	7032	450	6	0	0	0	3588	logfile
✔	8Q9L	18285	2025-02-14	2023-08-20	2.76	2.36	2.64	2.6	0.011	1.76	0.0	0.09	11.63	0.01	2.537	0.00	0.00	1.6	98.4	0.0	-1.68	0.29	0.76	6.43	2.6	0.005	0.60	0.0	0.05	18.22	0.00	2.436	1.27	1.56	1.4	98.6	0.0	-2.29	1.47	0.37	0.86	6.88	10233	657	9	0	0	0	5220	logfile
✔	8Q9D	18277	2025-02-12	2023-08-20	3.16	2.76	3.06	3.1	0.011	1.80	0.0	0.08	9.92	0.01	2.504	0.00	0.00	5.0	95.0	0.0	-1.95	0.30	0.76	6.33	3.1	0.003	0.57	0.0	0.05	14.58	0.00	2.460	1.28	2.02	1.6	98.4	0.0	-1.00	1.31	0.36	0.85	6.17	7032	450	6	0	0	0	3588	logfile
✔	8Q9i	18282	2025-02-11	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.002	0.56	0.0	0.05	18.04	0.00	2.506	0.29	0.52	0.5	99.5	0.0	-1.55	4.58	0.38	0.86	7.37	3411	219	3	0	0	0	1740	logfile
✔	8TW4	41658	2025-02-11	2023-08-20	3.3	4.47	3.24	3.3	0.004	0.86	0.0	0.05	16.31	0.01	2.104	21.31	3.91	7.3	92.4	0.3	-2.23	0.65	0.57	0.29	3.3	0.003	0.82	0.0	0.05	16.49	0.00	2.428	16.37	3.75	6.9	92.9	0.1	-1.97	1.62	0.67	0.61	0.66	6401	828	15	0	12	0	0	logfile
✔	8KGW	37234	2025-02-11	2023-08-19	3.4	3.29	3.11	3.3	0.006	0.86	0.0	0.05	13.65	0.01	2.241	4.95	0.00	3.6	96.4	0.0	-0.70	0.51	0.69	2.70	3.3	0.004	0.71	0.0	0.04	15.36	0.01	2.448	7.30	3.04	4.6	95.4	0.0	0.07	0.42	0.56	0.74	2.35	4036	532	2	0	1	0	0	logfile
✔	8KGi	37222	2025-02-11	2023-08-19	3.2	3.65	3.28	3.6	0.003	0.67	0.0	0.04	13.82	0.00	2.303	10.16	0.00	2.1	97.9	0.0	2.76	0.52	0.73	2.71	3.6	0.004	0.72	0.0	0.04	15.77	0.00	2.474	12.16	2.91	3.7	96.3	0.0	3.00	0.42	0.52	0.75	2.31	5766	782	2	0	0	0	0	logfile
✔	8KGL	37225	2025-02-12	2023-08-19	4.3	4.47	4.30	4.3	0.007	1.06	0.0	0.05	9.44	0.01	2.276	8.04	0.00	7.9	92.1	0.0	-3.21	0.81	0.76	—	4.3	0.002	0.61	0.0	0.04	11.46	0.00	2.417	9.22	0.00	4.7	95.3	0.0	0.18	0.92	0.81	0.76	—	8084	984	2	0	0	0	0	logfile

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