Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KGV	37233	2025-02-11	2023-08-19	3.2	3.67	3.27	3.6	0.005	0.80	0.0	0.05	13.39	0.01	2.297	10.33	0.23	1.5	98.3	0.2	0.35	0.52	0.76	2.25	3.6	0.005	0.71	0.0	0.04	15.40	0.00	2.531	10.70	2.53	2.7	97.3	0.0	1.39	1.03	0.51	0.77	2.02	4056	533	2	0	1	0	0	logfile
✔	8KGK	37224	2025-02-12	2023-08-19	3.16	3.62	3.34	3.6	0.005	0.69	1.0	0.05	13.37	0.01	2.122	11.80	0.40	2.6	97.3	0.1	0.89	0.61	0.75	3.01	3.6	0.003	0.62	0.0	0.04	15.60	0.00	2.401	8.35	2.70	2.4	97.6	0.0	0.95	1.16	0.60	0.77	2.27	7476	1006	5	0	0	0	0	logfile
✔	8Q92	18268	2025-02-10	2023-08-19	3.05	2.89	2.63	3.1	0.008	1.37	0.0	0.09	13.95	0.01	2.531	0.94	1.23	8.7	91.3	0.0	-3.17	0.37	0.86	4.77	3.1	0.004	0.74	0.0	0.05	15.68	0.00	2.615	3.51	1.23	6.2	93.8	0.0	-2.76	0.28	0.32	0.83	3.47	2091	282	3	0	0	0	0	logfile
✔	8Q8X	18264	2025-02-11	2023-08-19	2.54	2.40	2.39	2.5	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.5	97.5	0.0	-1.63	0.27	0.77	6.72	2.4	0.003	0.64	0.0	0.05	17.42	0.00	2.653	2.43	1.53	2.5	97.5	0.0	-2.02	0.96	0.37	0.91	6.75	3435	453	6	0	0	0	0	logfile
✔	8KGi	37222	2025-02-11	2023-08-19	3.2	3.65	3.28	3.6	0.003	0.67	0.0	0.04	13.82	0.00	2.303	10.16	0.00	2.1	97.9	0.0	2.76	0.52	0.73	2.71	3.6	0.004	0.72	0.0	0.04	15.77	0.00	2.474	12.16	2.91	3.7	96.3	0.0	3.00	0.42	0.52	0.75	2.31	5766	782	2	0	0	0	0	logfile
✔	8Q96	18269	2025-02-10	2023-08-19	3.09	3.01	2.64	3.2	0.009	1.24	0.0	0.07	10.14	0.01	2.529	1.50	0.00	5.6	94.4	0.0	-3.54	0.47	0.86	5.83	3.1	0.004	0.69	0.0	0.05	14.45	0.00	2.608	3.24	4.00	5.6	94.4	0.0	-3.33	1.19	0.45	0.84	4.93	2100	224	12	0	88	0	0	logfile
✔	8KGW	37234	2025-02-11	2023-08-19	3.4	3.29	3.11	3.3	0.006	0.86	0.0	0.05	13.65	0.01	2.241	4.95	0.00	3.6	96.4	0.0	-0.70	0.51	0.69	2.70	3.3	0.004	0.71	0.0	0.04	15.36	0.01	2.448	7.30	3.04	4.6	95.4	0.0	0.07	0.42	0.56	0.74	2.35	4036	532	2	0	1	0	0	logfile
✔	8Q8Y	18265	2025-02-12	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.003	0.56	0.0	0.05	17.91	0.00	2.410	1.31	2.07	2.1	97.9	0.0	-1.65	1.24	0.35	0.88	5.32	6896	441	6	0	0	0	3521	logfile
✔	8TVF	41640	2025-02-14	2023-08-18	2.8	3.25	2.53	3.0	0.014	1.36	0.0	0.09	12.90	0.01	2.021	0.75	0.28	1.4	98.4	0.2	0.03	0.86	0.84	4.74	3.0	0.003	0.57	0.0	0.04	12.92	0.00	2.509	2.97	0.84	1.3	98.4	0.2	1.22	0.49	0.86	0.88	4.18	10461	1296	12	0	12	564	0	logfile
✔	8Q8V	18262	2025-02-12	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.003	0.68	0.0	0.05	14.58	0.00	2.404	10.82	0.76	7.3	92.7	0.0	-3.42	2.99	0.32	0.78	4.43	7032	450	6	0	0	0	3588	logfile
✔	8TVG	41641	2025-02-12	2023-08-18	3.3	3.38	3.21	3.5	0.013	1.36	0.0	0.08	8.92	0.01	2.402	1.16	0.75	2.7	96.8	0.5	0.61	0.75	0.80	3.91	3.5	0.002	0.59	0.0	0.04	13.03	0.00	2.527	3.19	1.37	4.1	95.9	0.0	1.23	1.16	0.76	0.85	3.36	8310	1131	6	0	6	0	0	logfile
✔	8Q8S	18259	2025-02-14	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	2.2	0.003	0.72	0.0	0.05	16.20	0.01	2.353	5.38	1.68	5.4	94.6	0.0	-3.10	1.84	0.31	0.79	4.73	10611	684	9	0	0	0	5409	logfile
✔	8Q8M	18255	2025-02-12	2023-08-18	2.95	3.13	2.89	3.1	0.011	1.96	7.0	0.12	11.82	0.01	2.510	0.00	0.00	7.4	92.6	0.0	-1.64	0.40	0.85	5.71	3.1	0.003	0.60	0.0	0.05	15.07	0.00	2.444	2.41	1.01	3.8	96.2	0.0	-1.70	1.10	0.41	0.87	5.90	7074	456	6	0	0	0	3606	logfile
✔	8Q8C	18250	2025-02-11	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.54	0.0	0.05	16.55	0.00	2.587	0.60	0.81	2.2	97.8	0.0	-1.06	1.49	0.39	0.90	7.72	6618	429	6	0	0	0	3372	logfile
✔	8Q8E	18252	2025-02-12	2023-08-18	3.81	3.69	3.74	3.9	0.012	2.01	6.0	0.11	11.64	0.01	1.524	5.19	0.00	9.0	91.0	0.0	-2.95	0.28	0.52	2.07	4.1	0.006	0.96	0.0	0.06	15.52	0.01	2.446	12.96	6.67	12.3	87.7	0.0	-3.71	1.92	0.36	0.81	3.40	6810	894	12	0	0	0	0	logfile
✔	8KGE	37218	2025-02-11	2023-08-18	3.8	3.74	3.72	3.7	0.004	0.87	0.0	0.05	17.21	0.01	2.103	13.80	10.88	9.3	90.5	0.2	-2.27	0.45	0.79	3.10	3.7	0.003	0.71	0.0	0.05	16.87	0.00	2.383	8.16	7.25	8.5	91.3	0.2	-1.67	0.39	0.48	0.80	2.59	3584	486	2	0	0	0	0	logfile
✘	8Q8L	18254	2025-02-11	2023-08-18	3.04	3.14	2.87	3.3	0.011	2.07	2.0	0.11	11.49	0.01	2.539	0.29	0.00	5.3	94.5	0.2	-2.17	0.33	0.74	5.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3405	447	6	0	0	0	0	logfile
✔	8Q8U	18261	2025-02-11	2023-08-18	3.3	3.53	3.24	3.8	0.011	1.97	3.0	0.11	12.59	0.01	2.505	0.00	0.00	6.3	93.7	0.0	-3.01	0.42	0.76	3.25	3.8	0.003	0.61	0.0	0.05	13.55	0.00	2.508	3.93	0.54	4.1	95.9	0.0	-2.61	1.34	0.45	0.76	2.96	6642	426	6	0	0	0	3396	logfile
✔	8Q88	18249	2025-02-11	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.005	0.79	0.0	0.05	14.16	0.01	2.608	5.94	1.01	4.5	95.5	0.0	-2.61	1.32	0.39	0.87	5.02	3468	456	6	0	0	0	0	logfile
✔	8Q8R	18258	2025-02-11	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.003	0.73	0.0	0.05	17.18	0.00	2.601	3.11	2.78	7.7	92.3	0.0	-1.59	1.64	0.44	0.88	5.86	3468	456	6	0	0	0	0	logfile

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