Table showing results for March 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UXE	42761	2024-03-19	2023-11-09	3.53	3.86	—	2.2	0.004	0.74	0.0	0.04	15.07	0.01	2.079	13.47	0.79	3.1	96.8	0.1	0.78	0.84	0.82	2.54	2.0	0.002	0.58	0.0	0.04	15.48	0.00	2.129	10.83	0.47	3.0	96.9	0.1	1.32	0.32	0.84	0.82	2.47	138692	17324	12	0	16	0	0	logfile
✔	8UX1	42685	2024-03-17	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.003	0.57	0.0	0.04	26.19	0.00	2.218	5.99	1.63	2.3	97.7	0.0	1.65	1.07	0.86	0.86	3.70	16395	1332	12	291	0	0	0	logfile
✔	8R2i	18848	2024-03-17	2023-11-06	2.9	3.54	2.94	3.3	0.021	1.63	0.0	0.09	20.78	0.01	2.210	12.01	0.00	3.3	96.7	0.0	1.58	0.75	0.83	3.31	3.3	0.003	0.89	0.0	0.04	15.87	0.00	1.689	9.73	1.03	2.9	97.1	0.0	1.61	0.36	0.73	0.89	3.18	18054	1923	21	0	58	5	0	logfile
✔	8UW3	42637	2024-03-15	2023-11-06	3.2	3.11	3.18	3.2	0.006	0.64	0.0	0.04	17.22	0.00	1.850	8.61	2.51	5.4	94.5	0.1	0.74	0.79	0.79	2.52	3.2	0.003	0.58	0.0	0.04	18.61	0.00	2.158	13.32	2.59	5.3	94.6	0.1	0.82	0.99	0.82	0.84	2.34	12005	1265	4	73	1	0	0	logfile
✔	8UUX	42600	2024-03-15	2023-11-02	2.74	2.87	2.62	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.004	0.89	1.0	0.05	16.25	0.01	2.116	3.89	2.60	6.1	93.8	0.1	-1.17	0.20	0.42	0.85	3.64	12084	1532	9	0	3	310	0	logfile
✔	8UUZ	42602	2024-03-10	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.5	0.003	0.91	0.0	0.05	16.74	0.01	2.249	38.64	6.52	8.0	92.0	0.0	-1.98	1.31	0.75	0.58	0.64	2258	300	2	0	0	0	0	logfile
✔	8UV3	42604	2024-03-15	2023-11-02	2.72	2.82	2.64	2.8	0.010	1.06	0.0	0.06	14.69	0.01	1.851	5.72	0.39	8.0	91.8	0.2	-3.67	0.38	0.84	3.98	2.8	0.003	0.70	0.0	0.05	16.05	0.01	1.919	4.48	2.36	5.6	94.4	0.0	-1.63	0.35	0.37	0.76	3.31	12069	1534	9	0	3	276	0	logfile
✔	8UUN	42591	2024-03-20	2023-11-01	3.8	4.47	3.85	3.9	0.009	1.07	0.0	0.06	14.54	0.01	2.262	4.45	0.00	4.9	95.1	0.0	-1.78	0.87	0.86	2.02	3.9	0.003	0.57	0.0	0.04	14.55	0.00	2.189	8.08	0.91	4.4	95.6	0.0	-0.50	0.97	0.87	0.85	1.62	25829	3254	11	0	29	0	0	logfile
✔	8UUo	42592	2024-03-19	2023-11-01	3.9	4.75	4.09	4.0	0.008	1.10	0.0	0.06	15.13	0.01	2.155	6.64	0.11	5.0	95.0	0.0	-1.81	0.87	0.85	1.54	4.0	0.005	0.66	0.0	0.04	14.90	0.00	2.092	14.64	1.63	6.0	94.0	0.0	-0.70	1.00	0.87	0.85	1.40	25465	3218	9	0	22	0	0	logfile
✔	8UUM	42590	2024-03-20	2023-11-01	3.9	4.70	4.04	4.0	0.008	1.04	0.0	0.06	14.96	0.01	2.241	5.42	0.14	5.4	94.6	0.0	-1.71	0.88	0.86	1.69	4.0	0.003	0.70	1.0	0.04	14.42	0.00	2.034	9.53	0.74	3.6	96.4	0.0	-0.20	0.38	0.87	0.85	1.45	25786	3247	10	0	30	0	0	logfile
✔	8UUK	42588	2024-03-15	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.002	0.57	0.0	0.04	16.03	0.00	2.213	11.40	2.68	4.9	95.1	0.0	1.50	0.34	0.58	0.83	3.08	10242	1226	4	0	30	0	0	logfile
✔	8UUL	42589	2024-03-20	2023-11-01	3.2	4.04	3.32	3.7	0.009	1.04	0.0	0.07	14.63	0.01	2.247	3.74	0.04	5.0	95.0	0.0	-1.96	0.86	0.85	2.90	3.7	0.003	0.57	0.0	0.04	14.06	0.00	2.158	6.34	0.81	3.9	96.1	0.0	-0.28	0.34	0.85	0.84	2.21	25891	3254	13	0	33	0	0	logfile
✔	8WZB	37949	2024-03-17	2023-11-01	3.28	2.56	—	3.1	0.005	1.12	0.0	0.05	17.82	0.01	2.290	5.87	0.74	4.2	95.7	0.0	-2.34	0.79	0.76	1.83	3.0	0.005	0.76	0.0	0.05	17.95	0.01	2.105	15.72	4.59	4.8	95.1	0.1	-0.72	1.02	0.81	0.81	2.24	17594	2181	11	0	0	0	0	logfile
✔	8R1F	18809	2024-03-17	2023-11-01	3.67	3.92	3.69	3.9	0.008	0.98	0.0	0.07	11.49	0.02	2.496	0.36	0.21	2.3	97.7	0.0	-0.70	0.58	0.53	1.69	3.9	0.003	0.59	0.0	0.04	14.98	0.00	1.854	8.66	1.70	3.5	96.5	0.0	0.78	1.64	0.70	0.69	1.27	16629	1025	5	0	3	0	8263	logfile
✔	8R1G	18810	2024-03-22	2023-11-01	3.99	4.21	4.01	4.0	0.006	0.92	0.0	0.06	11.49	0.01	1.603	1.35	0.27	2.2	97.8	0.0	-0.72	0.69	0.55	0.61	4.1	0.003	0.61	0.0	0.04	15.47	0.00	1.962	11.79	2.50	3.4	96.6	0.0	0.50	1.43	0.75	0.67	0.88	33258	2050	10	0	6	0	16526	logfile
✔	8UT1	42526	2024-03-22	2023-10-30	2.3	2.36	2.25	2.3	0.011	0.85	0.0	0.05	19.18	0.01	2.264	3.14	0.56	3.3	96.7	0.0	0.14	0.66	0.83	4.99	2.4	0.002	0.49	0.0	0.04	15.79	0.00	2.285	6.89	0.62	0.8	99.2	0.0	1.86	1.60	0.66	0.85	4.78	33140	1970	25	0	60	45	15845	logfile
✔	8UTB	42537	2024-03-22	2023-10-30	2.3	2.35	2.26	2.3	0.012	0.91	0.0	0.05	18.53	0.01	2.278	5.81	0.29	2.4	97.6	0.0	-2.18	0.66	0.80	4.74	2.4	0.004	0.61	0.0	0.04	15.59	0.00	1.902	7.10	0.35	2.4	97.6	0.0	0.33	1.19	0.63	0.81	4.93	31440	1875	25	0	50	60	15105	logfile
✔	8USP	42510	2024-03-25	2023-10-28	3.3	4.27	—	4.0	0.003	0.66	8.0	0.04	14.46	0.00	1.875	7.99	0.15	3.0	97.0	0.0	1.03	0.80	0.79	0.78	4.0	0.003	0.61	0.0	0.04	16.12	0.00	2.153	9.26	1.96	3.0	96.9	0.0	1.38	0.43	0.83	0.83	0.91	47406	5892	6	0	0	0	0	logfile
✔	8WX3	37899	2024-03-11	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.002	0.57	0.0	0.04	15.21	0.00	2.273	7.05	2.17	2.8	97.0	0.2	1.89	1.32	0.55	0.83	2.54	7498	974	2	0	0	0	0	logfile
✔	8WX5	37901	2024-03-10	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.003	0.68	0.0	0.04	17.34	0.00	2.115	16.02	2.24	7.0	93.0	0.0	1.05	1.01	0.51	0.81	0.96	3857	504	2	0	0	0	0	logfile

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