Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UQ4	42460	2024-04-13	2023-10-23	3.64	4.02	—	2.1	0.003	0.75	0.0	0.04	13.89	0.01	2.104	15.24	0.24	3.3	96.6	0.1	0.41	0.89	0.84	2.59	2.1	0.003	0.63	0.0	0.04	14.88	0.00	2.101	12.57	0.54	3.1	96.8	0.1	1.07	0.36	0.89	0.83	2.31	138608	17324	12	0	12	0	0	logfile
✔	8UQ3	42459	2024-04-13	2023-10-23	3.18	3.70	—	1.9	0.003	0.74	0.0	0.04	14.12	0.01	2.054	12.49	0.18	2.9	97.0	0.0	0.73	0.91	0.85	2.92	1.9	0.004	0.70	0.0	0.04	14.90	0.00	1.966	11.46	0.65	3.1	96.9	0.1	1.15	0.40	0.92	0.89	2.90	138700	17324	12	0	16	0	0	logfile
✔	8UQ5	42461	2024-04-12	2023-10-23	3.96	3.98	—	2.1	0.003	0.72	4.0	0.04	14.11	0.01	2.128	12.20	0.30	2.6	97.3	0.1	0.53	0.90	0.82	2.38	2.1	0.003	0.66	0.0	0.04	15.06	0.00	2.154	11.73	0.67	3.1	96.8	0.1	1.12	0.38	0.90	0.83	2.31	135336	16896	8	0	12	0	0	logfile
✔	8UPF	42446	2024-04-10	2023-10-22	3.2	3.76	3.25	3.6	0.007	0.65	0.0	0.04	26.92	0.00	1.329	10.34	0.47	4.3	95.7	0.0	-2.24	0.79	0.83	2.25	3.6	0.003	0.58	0.0	0.03	26.72	0.00	2.147	9.33	1.16	3.0	97.0	0.0	1.82	0.45	0.77	0.82	1.38	14012	1006	13	293	2	0	0	logfile
✔	8WUW	37862	2024-04-07	2023-10-21	2.6	3.26	2.77	3.0	0.002	0.58	0.0	0.04	17.05	0.00	2.007	7.82	1.18	2.5	97.5	0.0	1.36	0.83	0.83	2.94	3.0	0.003	0.61	0.0	0.04	16.46	0.00	1.971	8.69	2.02	2.7	97.3	0.0	1.18	0.40	0.84	0.90	2.42	64841	8540	42	0	35	0	0	logfile
✔	8WUX	37863	2024-04-07	2023-10-21	2.6	3.34	2.85	3.1	0.003	0.63	0.0	0.04	16.06	0.00	2.017	6.83	1.06	2.4	97.5	0.1	0.85	0.84	0.89	3.12	3.0	0.006	0.69	0.0	0.05	15.38	0.00	1.942	9.66	1.95	2.8	97.1	0.1	1.01	1.56	0.85	0.91	2.73	61026	8050	35	0	35	0	0	logfile
✔	8WU4	37850	2024-04-06	2023-10-20	3.3	3.97	3.44	3.7	0.002	0.53	0.0	0.04	13.98	0.00	2.254	7.48	0.09	0.7	99.3	0.0	1.79	0.90	0.89	1.51	3.7	0.002	0.51	0.0	0.04	14.79	0.00	2.234	9.76	0.91	0.8	99.2	0.0	2.12	0.25	0.91	0.89	1.33	54670	7364	14	0	0	0	0	logfile
✔	8WUC	37853	2024-04-08	2023-10-20	2.5	3.09	2.46	2.9	0.004	0.67	0.0	0.04	16.60	0.00	1.940	9.89	1.01	1.5	98.5	0.0	0.80	0.84	0.87	2.89	2.9	0.003	0.72	0.0	0.04	16.69	0.00	1.989	11.34	1.30	1.6	98.4	0.0	0.91	0.40	0.86	0.90	2.75	65338	8708	42	0	28	0	0	logfile
✔	8UoY	42441	2024-04-08	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.69	0.00	1.889	17.22	4.99	9.2	90.7	0.1	-3.33	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile
✔	8WUA	37852	2024-04-05	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.70	0.0	0.04	16.76	0.00	2.274	9.96	3.45	6.1	93.9	0.0	0.55	0.91	0.54	0.68	1.16	5494	675	1	0	0	0	0	logfile
✔	8UoP	42435	2024-04-08	2023-10-20	3.8	3.97	3.89	3.8	0.005	0.91	0.0	0.04	16.45	0.01	1.954	17.97	0.73	15.7	83.6	0.7	-3.60	0.18	0.15	0.40	3.9	0.003	0.64	0.0	0.04	17.20	0.00	1.949	14.94	4.40	11.8	87.9	0.3	-3.15	0.92	0.24	0.24	0.27	13188	872	2	0	0	0	6544	logfile
✔	8Uo3	42426	2024-04-06	2023-10-19	3.5	3.84	3.61	3.8	0.006	0.87	0.0	0.06	14.93	0.01	2.246	6.81	0.20	3.0	97.0	0.0	0.16	0.67	0.84	2.66	3.8	0.002	0.49	0.0	0.04	14.30	0.00	2.021	4.35	1.78	2.2	97.8	0.0	0.74	0.35	0.67	0.84	2.17	6650	977	6	0	3	0	0	logfile
✔	8UNV	42418	2024-04-06	2023-10-19	3.3	3.79	3.62	3.8	0.006	0.87	0.0	0.06	14.50	0.00	2.201	4.63	0.34	2.0	98.0	0.0	0.91	0.65	0.85	3.31	3.7	0.002	0.51	1.0	0.04	14.77	0.00	2.233	3.83	2.03	2.1	97.8	0.1	0.85	0.38	0.64	0.85	2.27	6591	911	6	0	2	0	0	logfile
✔	8UNW	42419	2024-04-06	2023-10-19	3.4	3.74	3.49	3.7	0.005	0.92	0.0	0.06	15.25	0.00	2.214	4.77	0.16	1.7	98.3	0.0	0.86	0.63	0.84	3.25	3.7	0.002	0.50	0.0	0.04	15.33	0.00	2.166	3.44	2.43	1.4	98.6	0.0	1.08	0.32	0.64	0.86	2.54	6647	900	6	0	2	1	0	logfile
✔	8UNU	42417	2024-04-06	2023-10-19	3.5	3.84	3.62	3.8	0.005	0.83	0.0	0.05	14.14	0.00	2.227	6.74	0.50	1.5	98.5	0.0	1.67	0.63	0.83	2.91	3.8	0.003	0.50	0.0	0.04	15.22	0.00	2.282	4.01	2.52	1.6	98.4	0.0	1.51	0.38	0.64	0.84	2.62	6514	890	6	0	2	0	0	logfile
✔	8UNL	42408	2024-04-06	2023-10-19	3.3	3.59	3.34	3.6	0.005	0.68	0.0	0.04	14.03	0.00	2.228	3.82	0.00	1.6	98.4	0.0	1.49	0.66	0.88	2.99	3.6	0.003	0.47	0.0	0.04	13.80	0.00	2.245	4.06	1.32	1.8	98.2	0.0	1.43	0.91	0.68	0.89	3.04	6550	894	6	0	2	1	0	logfile
✔	8UNR	42414	2024-04-06	2023-10-19	3.4	3.68	3.45	3.7	0.005	0.79	0.0	0.05	13.75	0.00	1.950	4.40	0.00	2.3	97.7	0.0	0.99	0.66	0.86	3.46	3.7	0.002	0.49	0.0	0.04	14.80	0.00	2.080	3.06	2.85	2.0	98.0	0.0	1.30	0.92	0.65	0.87	2.79	6670	919	6	0	2	2	0	logfile
✔	8UNQ	42413	2024-04-06	2023-10-19	3.3	3.68	3.44	3.7	0.004	0.77	0.0	0.05	13.49	0.00	2.218	3.68	0.33	1.4	98.6	0.0	1.09	0.61	0.83	2.97	3.7	0.002	0.46	0.0	0.04	14.66	0.00	2.260	3.83	1.15	1.2	98.8	0.0	1.54	0.33	0.64	0.86	2.67	6687	915	6	0	2	1	0	logfile
✘	8UNM	42409	2024-04-05	2023-10-19	3.4	3.77	3.54	3.7	0.005	0.64	0.0	0.04	13.95	0.00	2.208	3.37	0.00	2.5	97.5	0.0	1.00	0.64	0.86	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6415	889	6	0	2	0	0	logfile
✔	8UNP	42412	2024-04-06	2023-10-19	3.3	3.63	3.39	3.6	0.006	0.80	0.0	0.04	13.79	0.00	2.207	6.73	0.00	1.9	98.1	0.0	0.82	0.65	0.87	3.59	3.6	0.002	0.47	0.0	0.04	15.15	0.00	2.103	3.28	2.23	1.6	98.4	0.0	1.14	0.93	0.65	0.86	2.68	6559	906	6	0	2	1	0	logfile

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