Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8QYS	18761	2024-04-06	2023-10-26	3.89	4.28	3.89	4.1	0.003	0.57	2.0	0.04	14.29	0.00	2.222	9.04	0.00	10.1	89.9	0.0	-1.10	0.85	0.85	1.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57862	7588	34	0	0	0	0	logfile
✔	8QZ8	18772	2024-04-11	2023-10-26	3.13	3.36	3.18	3.4	0.003	0.46	0.0	0.04	18.09	0.00	1.861	3.62	0.09	3.3	96.5	0.1	1.13	0.67	0.84	3.19	3.4	0.004	0.77	1.0	0.04	17.70	0.00	1.865	4.24	1.20	4.2	95.8	0.1	0.94	1.99	0.71	0.86	3.26	22629	1356	8	42	5	0	11077	logfile
✔	8QYJ	18755	2024-04-10	2023-10-26	2.73	3.16	2.80	3.0	0.002	0.44	0.0	0.04	13.65	0.00	2.235	2.65	0.00	2.0	98.0	0.0	1.76	0.79	0.88	3.08	3.0	0.004	0.54	0.0	0.04	15.86	0.00	2.154	2.68	1.52	2.5	97.5	0.0	1.42	0.26	0.78	0.89	2.85	19402	2498	13	0	3	0	0	logfile
✔	8QYL	18757	2024-04-11	2023-10-26	2.67	3.11	2.73	3.0	0.003	0.52	0.0	0.04	13.75	0.01	2.225	3.90	0.00	2.3	97.7	0.0	0.91	0.77	0.87	3.32	3.0	0.007	0.65	0.0	0.05	15.86	0.01	2.182	4.64	2.11	2.9	97.1	0.0	0.78	0.90	0.76	0.87	3.10	20997	2675	12	0	19	0	0	logfile
✔	8QZC	18774	2024-04-07	2023-10-26	3.29	3.49	3.36	3.5	0.004	0.81	0.0	0.05	13.36	0.01	2.246	3.27	0.00	4.4	95.6	0.0	-1.37	0.72	0.78	2.47	3.6	0.003	0.61	0.0	0.04	15.12	0.00	2.124	7.46	2.00	4.5	95.5	0.0	0.41	0.75	0.74	0.82	1.85	11468	1402	4	0	4	0	0	logfile
✔	8QYM	18758	2024-04-11	2023-10-26	2.73	3.22	2.84	3.1	0.002	0.47	0.0	0.04	13.61	0.01	2.215	2.77	0.04	2.4	97.6	0.0	1.18	0.81	0.89	3.16	3.1	0.004	0.55	0.0	0.04	15.83	0.00	2.207	3.17	1.09	3.1	96.9	0.0	0.92	0.91	0.81	0.90	3.07	22235	2848	13	0	18	0	0	logfile
✔	8URW	42502	2024-04-14	2023-10-26	2.79	3.49	2.93	3.3	0.003	0.56	0.0	0.04	20.95	0.00	2.226	6.27	4.41	6.1	93.5	0.3	-0.96	0.87	0.91	2.20	3.3	0.005	0.63	0.0	0.04	20.41	0.00	2.113	6.99	3.58	7.2	92.6	0.3	-0.90	0.38	0.83	0.89	2.20	29896	3574	13	94	4	0	0	logfile
✘	8QYN	18759	2024-04-13	2023-10-26	2.88	3.46	3.04	3.3	0.004	0.50	0.0	0.04	13.48	0.00	2.265	3.18	0.00	3.4	96.6	0.0	1.04	0.80	0.88	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29115	3731	17	0	22	0	0	logfile
✔	8UR3	42480	2024-04-07	2023-10-25	2.61	3.41	2.64	3.1	0.003	0.51	0.0	0.04	13.47	0.00	2.253	4.15	0.00	2.7	97.3	0.0	-0.63	0.86	0.85	3.65	3.1	0.003	0.49	0.0	0.04	14.96	0.00	2.150	8.09	0.58	2.9	97.1	0.0	1.00	1.17	0.87	0.86	3.24	9376	1158	2	0	0	0	0	logfile
✔	8UR6	42484	2024-04-06	2023-10-25	3.03	3.72	3.10	3.5	0.007	0.76	0.0	0.05	13.54	0.01	2.219	4.52	0.00	1.9	98.1	0.0	-0.07	0.83	0.84	2.50	3.5	0.003	0.47	0.0	0.04	14.45	0.00	2.159	8.44	0.60	1.7	98.3	0.0	1.16	1.59	0.83	0.85	2.26	7540	930	2	0	0	0	0	logfile
✔	8URB	42488	2024-04-11	2023-10-25	3.4	3.75	3.45	3.8	0.002	0.52	0.0	0.04	15.02	0.00	2.269	2.86	0.17	2.2	97.8	0.0	-0.61	0.73	0.82	3.32	3.8	0.004	0.53	0.0	0.04	15.83	0.00	2.140	3.79	2.35	4.1	95.9	0.0	0.06	1.12	0.72	0.82	2.35	22714	1359	7	41	2	0	11060	logfile
✔	8UR5	42482	2024-04-05	2023-10-25	3.7	3.90	2.45	4.0	0.011	1.45	0.0	0.09	9.30	0.01	2.510	6.45	1.71	4.3	95.2	0.4	-0.71	0.66	0.72	3.62	4.0	0.003	0.68	0.0	0.04	12.58	0.00	2.359	6.13	1.42	3.3	96.2	0.4	-0.12	1.63	0.68	0.78	3.59	4989	696	6	0	12	0	0	logfile
✔	8UR7	42486	2024-04-05	2023-10-25	3.9	4.14	3.48	4.1	0.009	1.28	0.0	0.07	9.35	0.00	2.207	7.52	0.66	4.7	95.3	0.0	-0.32	0.73	0.74	2.83	4.1	0.003	0.64	0.0	0.04	13.48	0.00	2.343	6.77	2.87	2.8	97.2	0.0	0.37	1.59	0.77	0.79	2.45	5772	789	6	0	9	0	0	logfile
✔	8QXB	18717	2024-04-05	2023-10-24	3.86	3.89	3.45	4.3	0.014	2.28	0.0	0.11	18.19	0.01	2.508	1.77	0.00	2.3	97.7	0.0	-3.90	0.53	0.71	2.65	4.2	0.004	1.26	1.0	0.04	18.38	0.00	2.084	19.76	4.41	4.1	95.9	0.0	-5.05	3.44	0.53	0.77	2.41	5544	810	18	0	0	0	0	logfile
✔	8UQV	42478	2024-04-15	2023-10-24	3.6	3.86	3.68	3.9	0.013	0.94	0.0	0.05	16.24	0.00	1.708	46.49	0.05	17.5	82.4	0.0	-3.66	0.60	0.59	0.13	3.9	0.003	0.73	0.0	0.04	16.96	0.01	2.138	13.00	3.48	10.7	89.3	0.0	-2.75	1.19	0.74	0.79	1.55	18024	2188	12	0	12	80	0	logfile
✔	8WW2	37881	2024-04-06	2023-10-24	2.79	3.00	2.84	3.1	0.004	0.71	0.0	0.05	13.76	0.00	1.809	4.15	0.00	3.5	96.5	0.0	0.09	0.66	0.80	2.96	3.1	0.003	0.54	0.0	0.04	15.84	0.00	2.291	2.86	1.36	3.0	97.0	0.0	1.21	0.34	0.64	0.81	2.45	7792	1020	6	0	3	2	0	logfile
✔	8QX9	18715	2024-04-05	2023-10-24	3.76	3.94	3.62	4.3	0.014	2.17	0.0	0.11	18.79	0.01	2.496	2.80	0.00	2.3	97.7	0.0	-4.75	0.50	0.70	3.13	4.3	0.004	0.86	0.0	0.04	20.21	0.00	2.230	20.41	2.87	3.7	96.3	0.0	-4.87	2.16	0.49	0.76	5.02	3696	540	12	0	0	0	0	logfile
✔	8QXA	18716	2024-04-05	2023-10-24	4.05	3.51	3.78	4.2	0.014	2.24	0.0	0.10	18.94	0.01	2.420	4.19	0.00	3.5	96.5	0.0	-4.36	0.51	0.75	—	4.2	0.004	0.84	0.0	0.04	14.57	0.00	2.342	19.02	0.00	9.1	90.9	0.0	-4.56	1.51	0.49	0.75	—	3696	540	12	0	0	0	0	logfile
✔	8UQ4	42460	2024-04-13	2023-10-23	3.64	4.02	—	2.1	0.003	0.75	0.0	0.04	13.89	0.01	2.104	15.24	0.24	3.3	96.6	0.1	0.41	0.89	0.84	2.59	2.1	0.003	0.63	0.0	0.04	14.88	0.00	2.101	12.57	0.54	3.1	96.8	0.1	1.07	0.36	0.89	0.83	2.31	138608	17324	12	0	12	0	0	logfile
✔	8UQ2	42458	2024-04-13	2023-10-23	2.98	3.53	—	1.8	0.003	0.75	0.0	0.04	14.08	0.01	2.072	11.43	0.50	2.8	97.2	0.1	0.81	0.91	0.85	3.00	1.9	0.004	0.78	0.0	0.04	14.94	0.00	2.122	11.39	0.52	3.2	96.7	0.1	1.20	0.42	0.92	0.89	3.14	138608	17324	12	0	12	0	0	logfile

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