Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UUK	42588	2024-04-07	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.002	0.57	0.0	0.04	16.03	0.00	2.213	11.40	2.68	4.9	95.1	0.0	1.50	0.34	0.58	0.83	3.08	10242	1226	4	0	30	0	0	logfile
✔	8R1C	18807	2024-04-14	2023-11-01	2.2	2.38	2.25	2.4	0.008	0.87	2.0	0.05	14.58	0.01	2.093	4.37	1.07	2.9	97.1	0.0	0.17	0.67	0.83	5.11	2.4	0.003	0.53	0.0	0.04	14.93	0.00	2.093	4.22	1.73	2.6	97.4	0.0	0.40	0.76	0.67	0.87	5.06	30426	3867	12	0	30	0	0	logfile
✔	8UUL	42589	2024-04-12	2023-11-01	3.2	4.04	3.32	3.7	0.009	1.04	0.0	0.07	14.63	0.01	2.247	3.74	0.04	5.0	95.0	0.0	-1.96	0.86	0.85	2.90	3.7	0.003	0.57	0.0	0.04	14.06	0.00	2.158	6.34	0.81	3.9	96.1	0.0	-0.28	0.34	0.85	0.84	2.21	25891	3254	13	0	33	0	0	logfile
✔	8UUo	42592	2024-04-12	2023-11-01	3.9	4.75	4.09	4.0	0.008	1.10	0.0	0.06	15.13	0.01	2.155	6.64	0.11	5.0	95.0	0.0	-1.81	0.87	0.85	1.54	4.0	0.005	0.66	0.0	0.04	14.90	0.00	2.092	14.64	1.63	6.0	94.0	0.0	-0.70	1.00	0.87	0.85	1.40	25465	3218	9	0	22	0	0	logfile
✔	8UU9	42576	2024-04-15	2023-10-31	3.1	3.37	3.07	3.3	0.005	0.62	0.0	0.04	22.65	0.01	1.847	5.82	0.20	6.8	93.0	0.2	-1.81	0.79	0.82	2.89	3.2	0.002	0.57	0.0	0.03	22.56	0.00	1.195	6.86	3.18	4.6	95.3	0.1	-0.83	1.02	0.83	0.89	2.70	142177	5710	90	4610	480	396	0	logfile
✔	8UU4	42554	2024-04-13	2023-10-31	3.0	3.80	3.01	3.2	0.005	0.61	0.0	0.04	22.56	0.01	1.852	5.73	0.00	6.1	93.8	0.1	-1.12	0.88	0.83	2.97	3.2	0.005	0.67	0.0	0.04	22.62	0.00	1.030	10.84	2.35	6.4	93.5	0.1	-0.87	1.75	0.93	0.92	2.08	139761	5407	66	4533	453	133	0	logfile
✘	8UU7	42566	2024-04-16	2023-10-31	3.2	3.53	3.21	3.4	0.004	0.55	0.0	0.03	22.36	0.01	1.860	6.54	0.00	5.3	94.6	0.1	-1.27	0.81	0.87	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	145251	5827	70	4613	397	15	0	logfile
✔	8UUA	42577	2024-04-13	2023-10-31	2.7	3.29	2.67	2.9	0.007	0.72	0.0	0.05	22.61	0.01	1.898	4.16	0.00	4.3	95.6	0.1	-0.37	0.92	0.91	4.13	2.9	0.007	0.63	0.0	0.04	22.41	0.00	1.814	5.36	2.69	4.2	95.8	0.1	-0.01	0.30	0.91	0.93	3.46	91008	3406	48	3008	205	134	0	logfile
✔	8UU5	42557	2024-04-14	2023-10-31	3.0	3.24	3.01	3.2	0.003	0.55	0.0	0.03	22.72	0.01	1.894	6.67	0.02	4.9	95.0	0.1	-1.12	0.82	0.86	3.58	3.2	0.002	0.56	0.0	0.03	22.69	0.00	1.157	6.48	2.61	4.7	95.2	0.1	-0.46	0.22	0.84	0.91	3.13	140861	5298	88	4627	494	323	0	logfile
✔	8UU8	42571	2024-04-15	2023-10-31	3.1	3.43	—	3.3	0.005	0.62	0.0	0.04	22.81	0.01	1.798	6.82	0.00	8.0	91.8	0.2	-1.80	0.78	0.83	3.12	3.3	0.002	0.58	0.0	0.03	22.75	0.00	1.804	7.07	2.91	5.9	94.0	0.1	-1.18	0.91	0.81	0.87	2.57	142031	5929	95	4614	428	364	0	logfile
✔	8UU6	42561	2024-04-12	2023-10-31	3.3	3.74	—	3.5	0.006	0.66	0.0	0.04	22.99	0.01	1.900	8.58	0.06	7.1	92.8	0.1	-1.52	0.82	0.86	2.68	3.5	0.006	0.70	1.0	0.04	22.81	0.01	1.825	9.04	5.12	7.3	92.6	0.1	-1.18	0.88	0.82	0.88	2.19	136923	5269	62	4614	103	5	0	logfile
✔	8WY5	37916	2024-04-09	2023-10-30	3.12	3.34	3.15	3.4	0.006	1.18	1.0	0.07	18.38	0.01	2.380	2.95	0.18	5.0	94.5	0.5	-4.06	0.61	0.72	1.90	3.4	0.005	1.00	2.0	0.06	19.83	0.01	2.119	14.83	2.15	7.7	91.9	0.5	-1.79	1.05	0.66	0.77	1.96	16038	1770	12	76	4	0	0	logfile
✔	8UTB	42537	2024-04-14	2023-10-30	2.3	2.35	2.26	2.3	0.012	0.91	0.0	0.05	18.53	0.01	2.278	5.81	0.29	2.4	97.6	0.0	-2.18	0.66	0.80	4.74	2.4	0.004	0.61	0.0	0.04	15.59	0.00	1.902	7.10	0.35	2.4	97.6	0.0	0.33	1.19	0.63	0.81	4.93	31440	1875	25	0	50	60	15105	logfile
✔	8WY4	37915	2024-04-09	2023-10-30	2.81	2.99	2.90	3.0	0.006	1.06	0.0	0.06	15.32	0.01	2.368	2.51	0.00	4.3	95.7	0.0	-3.49	0.69	0.76	2.56	3.0	0.003	0.69	0.0	0.04	17.56	0.00	2.176	6.20	1.87	3.9	96.1	0.0	0.03	0.53	0.68	0.79	2.37	14864	1804	8	0	4	0	0	logfile
✔	8UT1	42526	2024-04-15	2023-10-30	2.3	2.36	2.25	2.3	0.011	0.85	0.0	0.05	19.18	0.01	2.264	3.14	0.56	3.3	96.7	0.0	0.14	0.66	0.83	4.99	2.4	0.002	0.49	0.0	0.04	15.79	0.00	2.285	6.89	0.62	0.8	99.2	0.0	1.86	1.60	0.66	0.85	4.78	33140	1970	25	0	60	45	15845	logfile
✔	8WX3	37899	2024-04-06	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.002	0.57	0.0	0.04	15.21	0.00	2.273	7.05	2.17	2.8	97.0	0.2	1.89	1.32	0.55	0.83	2.54	7498	974	2	0	0	0	0	logfile
✔	8WX5	37901	2024-04-05	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.003	0.68	0.0	0.04	17.34	0.00	2.115	16.02	2.24	7.0	93.0	0.0	1.05	1.01	0.51	0.81	0.96	3857	504	2	0	0	0	0	logfile
✔	8WX4	37900	2024-04-06	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	1.335	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.002	0.53	0.0	0.04	15.41	0.00	2.217	6.37	1.40	2.9	97.1	0.0	1.74	1.31	0.58	0.82	2.16	7512	976	6	0	0	0	0	logfile
✔	8WX2	37898	2024-04-06	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.171	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.87	0.0	0.05	16.84	0.01	2.098	14.57	3.56	8.0	92.0	0.0	0.50	0.66	0.60	0.75	0.81	6800	880	2	0	0	0	0	logfile
✘	8QYS	18761	2024-04-06	2023-10-26	3.89	4.28	3.89	4.1	0.003	0.57	2.0	0.04	14.29	0.00	2.222	9.04	0.00	10.1	89.9	0.0	-1.10	0.85	0.85	1.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57862	7588	34	0	0	0	0	logfile

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