Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8R3L	18872	2024-04-15	2023-11-09	3.25	2.90	3.19	3.1	0.002	0.48	0.0	0.04	17.48	0.00	1.945	6.41	0.21	3.0	97.0	0.0	0.70	0.76	0.82	2.43	3.1	0.002	0.48	0.0	0.04	17.82	0.00	1.910	6.72	1.47	3.2	96.8	0.0	0.51	0.39	0.76	0.83	2.32	35425	2149	6	31	0	0	17547	logfile
✔	8X2J	38012	2024-04-10	2023-11-09	2.7	2.99	2.81	3.0	0.021	1.16	0.0	0.32	15.54	0.01	1.902	7.97	0.39	4.9	95.1	0.0	-1.85	0.56	0.75	3.45	3.0	0.003	0.83	0.0	0.05	16.49	0.00	1.802	11.55	1.56	4.2	95.8	0.0	0.31	0.46	0.57	0.77	3.30	19918	2471	12	0	14	0	0	logfile
✔	8UXG	42763	2024-04-13	2023-11-09	3.08	3.56	—	2.1	0.003	0.74	0.0	0.04	15.50	0.01	2.011	10.23	1.27	2.3	97.7	0.0	1.03	0.84	0.82	2.79	1.9	0.004	0.60	0.0	0.04	15.56	0.00	2.166	8.60	0.40	2.7	97.2	0.0	1.59	0.39	0.86	0.86	3.04	138712	17324	12	0	16	0	0	logfile
✔	8UX1	42685	2024-04-09	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.003	0.57	0.0	0.04	26.19	0.00	2.218	5.99	1.63	2.3	97.7	0.0	1.65	1.07	0.86	0.86	3.70	16395	1332	12	291	0	0	0	logfile
✔	8X1C	37990	2024-04-06	2023-11-06	3.2	3.25	3.24	3.2	0.005	0.89	2.0	0.08	18.43	0.01	1.051	10.94	5.29	4.4	95.2	0.4	-2.42	0.67	0.54	0.97	3.2	0.003	0.66	0.0	0.04	19.79	0.00	2.129	11.55	2.28	5.6	94.4	0.1	-0.28	1.64	0.80	0.83	1.35	56519	6347	35	294	10	0	0	logfile
✔	8X19	37988	2024-04-06	2023-11-06	3.2	3.02	3.29	3.2	0.005	0.83	0.0	0.05	20.52	0.01	1.500	20.98	7.61	6.6	92.9	0.5	-2.03	0.59	0.48	1.30	3.1	0.004	0.75	1.0	0.04	20.68	0.00	1.826	13.89	2.85	5.6	94.2	0.2	-0.42	2.12	0.73	0.80	1.27	56704	6372	34	294	11	0	0	logfile
✔	8R2i	18848	2024-04-10	2023-11-06	2.9	3.54	2.94	3.3	0.021	1.63	0.0	0.09	20.78	0.01	2.210	12.01	0.00	3.3	96.7	0.0	1.58	0.75	0.83	3.31	3.3	0.003	0.89	0.0	0.04	15.87	0.00	1.689	9.73	1.03	2.9	97.1	0.0	1.61	0.36	0.73	0.89	3.18	18054	1923	21	0	58	5	0	logfile
✔	8X15	37984	2024-04-06	2023-11-06	3.2	3.28	3.28	3.0	0.004	0.69	0.0	0.05	17.10	0.01	1.169	13.08	4.96	4.6	95.2	0.2	-2.12	0.60	0.44	0.83	3.0	0.007	0.78	0.0	0.05	19.03	0.01	2.098	13.98	2.58	5.7	94.2	0.0	-0.10	0.98	0.76	0.82	1.33	55488	6279	33	274	8	0	0	logfile
✔	8UW3	42637	2024-04-08	2023-11-06	3.2	3.11	3.18	3.2	0.006	0.64	0.0	0.04	17.22	0.00	1.850	8.61	2.51	5.4	94.5	0.1	0.74	0.79	0.79	2.52	3.2	0.003	0.58	0.0	0.04	18.61	0.00	2.158	13.32	2.59	5.3	94.6	0.1	0.82	0.99	0.82	0.84	2.34	12005	1265	4	73	1	0	0	logfile
✔	8UVU	42629	2024-04-08	2023-11-04	3.0	3.23	2.99	3.2	0.003	0.60	0.0	0.04	14.70	0.00	2.246	8.69	0.00	4.3	95.7	0.0	1.70	0.68	0.83	2.96	3.2	0.004	0.65	0.0	0.04	16.24	0.00	2.210	9.67	3.18	5.1	94.9	0.0	1.88	0.26	0.64	0.83	2.95	11976	1516	8	0	8	0	0	logfile
✔	8UVT	42628	2024-04-08	2023-11-04	2.9	3.16	2.88	3.1	0.003	0.47	0.0	0.04	15.28	0.00	2.233	8.27	0.00	3.7	96.3	0.0	2.31	0.67	0.83	2.02	3.1	0.003	0.52	0.0	0.04	17.33	0.00	2.233	8.79	2.07	3.9	96.1	0.0	3.47	0.35	0.63	0.82	1.80	12104	1544	4	0	0	0	0	logfile
✔	8UUX	42600	2024-04-08	2023-11-02	2.74	2.87	2.62	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.004	0.89	1.0	0.05	16.25	0.01	2.116	3.89	2.60	6.1	93.8	0.1	-1.17	0.20	0.42	0.85	3.64	12084	1532	9	0	3	310	0	logfile
✔	8UV3	42604	2024-04-08	2023-11-02	2.72	2.82	2.64	2.8	0.010	1.06	0.0	0.06	14.69	0.01	1.851	5.72	0.39	8.0	91.8	0.2	-3.67	0.38	0.84	3.98	2.8	0.003	0.70	0.0	0.05	16.05	0.01	1.919	4.48	2.36	5.6	94.4	0.0	-1.63	0.35	0.37	0.76	3.31	12069	1534	9	0	3	276	0	logfile
✔	8UUZ	42602	2024-04-05	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.5	0.003	0.91	0.0	0.05	16.74	0.01	2.249	38.64	6.52	8.0	92.0	0.0	-1.98	1.31	0.75	0.58	0.64	2258	300	2	0	0	0	0	logfile
✘	8R1D	18808	2024-04-14	2023-11-01	2.37	2.35	2.20	2.4	0.008	0.85	0.0	0.05	14.94	0.01	2.112	5.41	1.11	2.9	97.1	0.0	-0.07	0.70	0.86	5.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30493	3876	18	0	30	43	0	logfile
✔	8UUL	42589	2024-04-12	2023-11-01	3.2	4.04	3.32	3.7	0.009	1.04	0.0	0.07	14.63	0.01	2.247	3.74	0.04	5.0	95.0	0.0	-1.96	0.86	0.85	2.90	3.7	0.003	0.57	0.0	0.04	14.06	0.00	2.158	6.34	0.81	3.9	96.1	0.0	-0.28	0.34	0.85	0.84	2.21	25891	3254	13	0	33	0	0	logfile
✔	8UUM	42590	2024-04-12	2023-11-01	3.9	4.70	4.04	4.0	0.008	1.04	0.0	0.06	14.96	0.01	2.241	5.42	0.14	5.4	94.6	0.0	-1.71	0.88	0.86	1.69	4.0	0.003	0.70	1.0	0.04	14.42	0.00	2.034	9.53	0.74	3.6	96.4	0.0	-0.20	0.38	0.87	0.85	1.45	25786	3247	10	0	30	0	0	logfile
✔	8UUo	42592	2024-04-12	2023-11-01	3.9	4.75	4.09	4.0	0.008	1.10	0.0	0.06	15.13	0.01	2.155	6.64	0.11	5.0	95.0	0.0	-1.81	0.87	0.85	1.54	4.0	0.005	0.66	0.0	0.04	14.90	0.00	2.092	14.64	1.63	6.0	94.0	0.0	-0.70	1.00	0.87	0.85	1.40	25465	3218	9	0	22	0	0	logfile
✔	8R1C	18807	2024-04-14	2023-11-01	2.2	2.38	2.25	2.4	0.008	0.87	2.0	0.05	14.58	0.01	2.093	4.37	1.07	2.9	97.1	0.0	0.17	0.67	0.83	5.11	2.4	0.003	0.53	0.0	0.04	14.93	0.00	2.093	4.22	1.73	2.6	97.4	0.0	0.40	0.76	0.67	0.87	5.06	30426	3867	12	0	30	0	0	logfile
✔	8UUK	42588	2024-04-07	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.002	0.57	0.0	0.04	16.03	0.00	2.213	11.40	2.68	4.9	95.1	0.0	1.50	0.34	0.58	0.83	3.08	10242	1226	4	0	30	0	0	logfile

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