Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QLo	18486	2024-04-06	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.005	0.69	0.0	0.04	16.79	0.00	2.110	12.10	2.80	3.4	96.6	0.0	0.34	0.88	0.77	0.81	2.88	7282	892	2	0	0	0	0	logfile
✔	8UAF	42062	2024-04-07	2023-09-20	3.18	2.39	3.33	2.1	0.005	0.64	0.0	0.27	18.11	0.00	1.721	4.71	0.00	5.0	95.0	0.0	-0.70	0.75	0.74	2.16	2.1	0.003	0.67	3.0	0.04	16.88	0.00	1.711	6.85	1.96	5.6	94.4	0.0	-1.07	0.43	0.75	0.74	1.78	64015	8033	35	0	22	0	0	logfile
✔	8WG5	37503	2024-04-09	2023-09-20	3.05	3.73	3.03	3.0	0.003	0.59	0.0	0.04	26.06	0.00	2.099	12.21	0.32	2.6	97.4	0.0	1.36	0.83	0.71	0.29	3.0	0.004	0.66	0.0	0.04	26.82	0.00	2.082	13.16	2.42	2.8	97.2	0.0	1.67	1.57	0.91	0.87	1.41	14965	1135	12	294	0	0	0	logfile
✔	8WG8	37505	2024-04-06	2023-09-20	2.71	3.54	2.73	3.3	0.005	0.68	0.0	0.05	13.93	0.00	2.170	7.15	2.13	3.8	96.2	0.0	0.12	0.64	0.79	2.81	3.3	0.004	0.65	0.0	0.04	15.84	0.00	2.099	8.09	2.36	3.8	96.2	0.0	0.89	0.50	0.63	0.80	2.72	8043	1037	6	0	0	0	0	logfile
✔	8UAE	42061	2024-04-07	2023-09-20	3.25	2.38	3.36	2.1	0.004	0.54	0.0	0.13	15.78	0.00	1.383	2.81	0.01	4.4	95.6	0.0	-0.64	0.80	0.81	2.82	2.1	0.002	0.52	0.0	0.04	17.07	0.00	2.033	4.08	1.39	4.3	95.7	0.0	-0.33	1.21	0.79	0.80	2.49	64624	8033	35	0	22	0	0	logfile
✔	8WFL	37495	2024-04-05	2023-09-19	3.03	3.10	3.19	3.5	0.008	0.73	0.0	0.05	17.26	0.00	2.223	11.05	0.21	6.8	93.2	0.0	-0.36	0.54	0.79	2.07	3.5	0.003	0.58	0.0	0.04	17.62	0.00	2.141	8.43	5.57	6.4	93.6	0.0	-0.24	0.28	0.53	0.79	2.31	4414	552	2	0	1	0	0	logfile
✘	8WEY	37480	2024-04-15	2023-09-19	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36163	3113	47	0	238	560	0	logfile
✔	8WFJ	37493	2024-04-05	2023-09-19	3.35	3.52	3.51	3.7	0.003	0.56	0.0	0.04	17.68	0.00	2.248	9.13	0.00	6.8	93.2	0.0	0.04	0.51	0.80	1.28	3.7	0.003	0.57	0.0	0.04	17.87	0.00	2.201	6.57	4.59	5.9	93.9	0.2	0.43	0.88	0.50	0.79	1.27	4148	518	2	0	1	0	0	logfile
✔	8WFi	37492	2024-04-05	2023-09-19	2.58	2.82	2.57	2.8	0.002	0.57	0.0	0.04	12.58	0.00	2.278	2.56	0.00	2.4	97.6	0.0	1.63	0.62	0.81	3.69	2.8	0.003	0.58	0.0	0.04	15.25	0.00	2.194	2.44	2.64	2.8	97.2	0.0	1.87	0.89	0.68	0.85	3.52	4347	543	3	0	3	37	0	logfile
✔	8WFK	37494	2024-04-05	2023-09-19	3.22	3.53	3.37	3.6	0.003	0.61	0.0	0.04	17.00	0.00	2.137	5.06	0.00	5.0	95.0	0.0	-1.97	0.54	0.85	2.36	3.6	0.003	0.55	0.0	0.04	17.09	0.00	2.185	4.95	1.52	5.4	94.6	0.0	-0.38	0.36	0.59	0.87	2.06	4371	546	2	0	4	0	0	logfile
✔	8U8Y	42029	2024-04-11	2023-09-18	2.1	2.25	2.12	2.3	0.007	0.74	0.0	0.05	17.23	0.01	2.328	2.24	1.76	2.6	97.4	0.0	0.39	0.74	0.86	5.43	2.3	0.002	0.47	0.0	0.04	17.03	0.00	2.310	3.01	1.80	2.5	97.5	0.0	1.00	0.19	0.72	0.86	5.42	22616	2936	16	0	16	0	0	logfile
✔	8U8o	42026	2024-04-14	2023-09-18	2.4	2.72	2.39	2.3	0.006	0.78	0.0	0.05	18.03	0.00	2.256	3.62	1.24	3.4	96.6	0.0	0.12	0.82	0.79	4.19	2.3	0.004	0.68	0.0	0.04	16.74	0.00	2.121	5.95	1.12	3.1	96.9	0.0	1.07	1.40	0.88	0.91	3.41	30080	3856	16	0	32	0	0	logfile
✔	8WEJ	37477	2024-04-07	2023-09-18	2.79	2.58	2.84	3.0	0.007	0.91	0.0	0.05	14.70	0.01	1.991	3.56	2.33	3.6	96.4	0.0	-0.11	0.72	0.78	4.06	3.0	0.003	0.64	0.0	0.04	16.53	0.00	2.027	12.17	2.43	3.5	96.5	0.0	0.11	1.54	0.72	0.81	3.49	10659	1336	11	0	12	1	0	logfile
✔	8WE7	37473	2024-04-11	2023-09-17	3.2	3.60	3.49	3.6	0.004	0.75	1.0	0.04	18.92	0.01	2.198	12.87	0.74	9.9	89.1	1.0	-2.42	0.53	0.76	2.05	3.6	0.003	0.67	0.0	0.04	17.80	0.00	2.188	10.21	3.45	9.8	89.7	0.5	-1.64	0.41	0.57	0.80	1.80	21014	2583	11	0	20	0	0	logfile
✔	8WE8	37474	2024-04-11	2023-09-17	2.9	3.21	3.10	3.2	0.004	0.76	0.0	0.04	20.19	0.00	2.197	9.57	5.44	6.0	93.6	0.4	-1.07	0.57	0.82	2.08	3.2	0.003	0.64	0.0	0.04	18.28	0.00	2.189	9.01	3.53	5.9	93.9	0.3	-0.97	0.33	0.55	0.81	2.05	21309	2593	12	0	26	0	0	logfile
✔	8U8F	42023	2024-04-08	2023-09-17	3.49	3.84	3.55	3.9	0.003	0.54	0.0	0.04	15.46	0.01	2.124	7.60	0.13	2.5	97.4	0.1	1.41	0.59	0.68	1.19	3.9	0.002	0.54	0.0	0.04	16.14	0.00	2.058	10.40	2.15	3.3	96.7	0.0	0.77	0.44	0.59	0.73	1.43	13891	889	5	0	1	0	6925	logfile
✔	8WEA	37476	2024-04-09	2023-09-17	3.2	3.43	3.24	3.5	0.009	1.29	2.0	0.11	19.61	0.01	1.927	29.12	5.51	9.4	88.9	1.7	-2.74	0.60	0.73	1.67	3.4	0.004	0.90	0.0	0.06	17.77	0.00	2.097	11.38	3.50	6.3	93.7	0.0	-0.58	1.08	0.65	0.82	2.31	17188	2154	9	0	19	0	0	logfile
✔	8WE9	37475	2024-04-10	2023-09-17	3.0	3.48	3.17	3.4	0.006	0.90	1.0	0.05	22.12	0.00	2.195	15.78	8.57	9.2	89.4	1.4	-2.16	0.57	0.78	2.03	3.4	0.005	0.74	0.0	0.04	19.06	0.00	2.060	10.94	4.46	8.2	91.7	0.2	-1.31	0.46	0.58	0.79	2.28	20730	2532	10	0	23	0	0	logfile
✔	8WE6	37472	2024-04-10	2023-09-17	2.9	3.27	3.16	3.3	0.005	0.86	0.0	0.04	21.75	0.01	2.174	11.81	6.34	8.4	91.1	0.5	-2.16	0.53	0.81	2.49	3.3	0.005	0.76	0.0	0.05	19.03	0.01	2.146	10.69	5.18	8.6	91.1	0.3	-1.52	0.37	0.55	0.83	2.41	20758	2532	10	0	24	0	0	logfile
✔	8U89	42018	2024-04-07	2023-09-16	3.3	3.66	3.52	3.7	0.003	0.70	0.0	0.04	16.18	0.01	2.091	8.51	0.54	2.4	97.6	0.0	0.98	0.67	0.79	1.47	3.7	0.004	0.87	0.0	0.04	16.92	0.00	2.078	10.17	2.54	2.4	97.6	0.0	1.48	1.15	0.68	0.80	1.50	9928	1241	4	0	2	0	0	logfile

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