Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WDU	37465	2024-04-12	2023-09-16	2.24	1.99	2.27	2.2	0.019	1.89	0.0	0.06	24.81	0.02	1.765	13.88	1.73	1.7	98.3	0.0	2.02	0.62	0.83	5.33	2.2	0.007	0.96	0.0	0.05	20.08	0.01	1.978	12.89	2.85	2.3	97.7	0.0	1.57	0.29	0.71	0.89	5.35	26274	2575	98	0	113	334	0	logfile
✔	8U89	42018	2024-04-07	2023-09-16	3.3	3.66	3.52	3.7	0.003	0.70	0.0	0.04	16.18	0.01	2.091	8.51	0.54	2.4	97.6	0.0	0.98	0.67	0.79	1.47	3.7	0.004	0.87	0.0	0.04	16.92	0.00	2.078	10.17	2.54	2.4	97.6	0.0	1.48	1.15	0.68	0.80	1.50	9928	1241	4	0	2	0	0	logfile
✔	8U8B	42020	2024-04-12	2023-09-16	3.7	4.26	3.89	4.0	0.004	0.77	0.0	0.05	13.63	0.00	2.238	4.96	0.62	7.3	92.7	0.0	-2.19	0.73	0.63	1.05	4.0	0.003	0.65	0.0	0.04	14.85	0.00	2.116	8.97	1.75	5.3	94.7	0.0	-0.34	0.70	0.82	0.77	0.89	24694	3424	6	2	2	0	0	logfile
✔	8U7V	42012	2024-04-13	2023-09-15	3.3	3.67	3.36	3.7	0.007	1.18	0.0	0.09	20.78	0.00	2.127	7.94	0.85	3.3	96.5	0.2	-0.95	0.64	0.83	2.41	3.7	0.004	0.63	0.0	0.04	18.87	0.00	2.141	5.84	2.77	3.5	96.3	0.2	-0.36	0.51	0.65	0.86	2.63	29680	3768	16	0	40	0	0	logfile
✔	8U81	41996	2024-04-16	2023-09-15	3.82	4.70	3.78	2.8	0.004	0.80	0.0	0.04	17.06	0.01	2.097	15.68	0.60	5.0	94.9	0.1	-1.07	0.88	0.75	0.15	2.9	0.004	0.73	0.0	0.04	17.79	0.00	2.071	25.28	2.88	5.9	94.0	0.1	-0.79	0.57	0.89	0.75	0.04	37890	4770	20	0	0	0	0	logfile
✔	8U84	42008	2024-04-16	2023-09-15	3.88	4.89	3.87	2.9	0.004	0.84	0.0	0.05	16.82	0.01	2.125	14.34	0.62	5.2	94.5	0.3	-0.92	0.90	0.75	0.16	2.8	0.004	0.75	0.0	0.04	17.42	0.00	2.069	25.04	2.83	6.2	93.8	0.1	-0.54	1.21	0.90	0.78	0.04	37885	4770	20	0	0	0	0	logfile
✔	8U7i	41983	2024-04-16	2023-09-15	2.57	3.46	2.74	3.1	0.004	0.62	0.0	0.04	17.45	0.00	2.101	10.01	3.23	2.9	97.1	0.1	0.66	0.79	0.88	2.83	3.1	0.003	0.64	0.0	0.04	17.49	0.00	2.137	10.28	2.79	2.8	97.1	0.1	1.31	0.35	0.79	0.87	2.64	38864	4760	16	0	0	0	0	logfile
✔	8QKK	18464	2024-04-05	2023-09-15	3.23	3.44	3.28	3.6	0.002	0.49	0.0	0.04	14.14	0.00	2.132	9.00	0.00	2.9	97.1	0.0	2.28	0.62	0.79	1.22	3.6	0.005	1.15	1.0	0.05	15.88	0.00	2.253	10.33	1.85	2.3	97.7	0.0	1.66	0.79	0.64	0.80	1.36	5581	730	1	0	0	0	0	logfile
✔	8U7Q	41989	2024-04-14	2023-09-15	3.3	3.62	3.26	3.6	0.006	1.09	0.0	0.06	20.74	0.00	2.325	6.75	0.73	3.3	96.5	0.2	-0.67	0.79	0.83	2.15	3.6	0.002	0.58	0.0	0.04	18.05	0.00	2.138	6.88	4.08	2.9	96.9	0.2	0.21	0.52	0.80	0.86	2.06	30520	3872	16	0	40	0	0	logfile
✔	8U7M	41986	2024-04-13	2023-09-15	3.1	3.40	3.15	3.4	0.007	1.13	0.0	0.09	20.22	0.01	2.203	10.32	0.27	3.8	96.2	0.0	-1.11	0.68	0.69	2.25	3.4	0.003	0.67	0.0	0.04	18.42	0.00	2.121	11.19	3.21	4.5	95.5	0.0	-0.99	0.58	0.69	0.72	1.82	28336	3608	16	0	40	0	0	logfile
✔	8QK3	18455	2024-04-06	2023-09-14	3.2	4.00	3.10	3.4	0.003	0.60	0.0	0.04	12.49	0.00	1.913	6.28	0.12	3.1	96.9	0.0	-0.49	0.87	0.81	3.51	3.4	0.006	0.76	0.0	0.04	14.56	0.00	2.049	17.02	3.18	4.9	95.1	0.0	-0.45	0.93	0.87	0.87	3.00	7535	955	5	0	0	0	0	logfile
✔	8QJX	18453	2024-04-06	2023-09-14	3.3	3.68	3.02	3.3	0.005	0.59	0.0	0.05	13.62	0.00	1.871	5.41	0.00	3.7	96.3	0.0	-0.83	0.88	0.87	4.13	3.3	0.003	0.62	0.0	0.04	15.00	0.00	2.066	8.57	2.47	3.8	96.2	0.0	-0.40	0.79	0.88	0.88	3.40	7868	997	5	0	0	0	0	logfile
✔	8WD8	37457	2024-04-08	2023-09-14	2.9	3.05	2.88	3.1	0.004	0.70	0.0	0.05	19.79	0.01	1.852	3.54	0.65	3.5	96.5	0.0	-1.91	0.77	0.89	2.83	3.1	0.004	0.56	0.0	0.04	20.03	0.00	1.920	5.31	2.89	2.7	97.3	0.0	0.69	0.94	0.70	0.89	3.33	13667	1500	9	64	7	0	0	logfile
✔	8QJY	18454	2024-04-05	2023-09-14	3.5	4.18	3.43	3.7	0.003	0.61	0.0	0.05	13.67	0.00	1.682	8.80	0.14	2.7	97.3	0.0	-0.59	0.85	0.80	3.37	3.9	0.004	0.73	0.0	0.04	15.63	0.00	2.092	15.25	3.66	3.4	96.6	0.0	-0.51	1.62	0.86	0.84	2.78	6287	798	4	0	0	0	0	logfile
✔	8WD6	37455	2024-04-06	2023-09-14	2.87	3.11	2.89	3.2	0.003	0.56	1.0	0.04	16.49	0.00	2.431	5.56	0.12	2.7	97.3	0.0	1.60	0.57	0.77	1.54	3.2	0.004	0.65	0.0	0.04	17.54	0.00	2.100	6.18	3.35	4.1	95.9	0.0	1.22	1.19	0.57	0.79	1.64	7973	1025	2	0	0	0	0	logfile
✔	8WCN	37444	2024-04-05	2023-09-13	3.2	2.54	2.95	3.1	0.004	0.72	0.0	0.04	16.65	0.00	1.902	13.05	0.50	2.7	97.3	0.0	0.54	0.72	0.71	1.25	3.0	0.003	0.66	0.0	0.04	17.07	0.00	1.886	10.10	4.83	3.2	96.8	0.0	1.19	0.55	0.77	0.74	1.39	6086	757	4	0	6	0	0	logfile
✔	8QJJ	18448	2024-04-06	2023-09-13	3.35	3.35	3.18	3.3	0.012	1.98	0.0	0.10	12.60	0.01	2.538	0.43	0.00	2.3	97.7	0.0	-2.06	0.33	0.77	5.23	3.3	0.003	0.60	0.0	0.05	15.79	0.00	2.195	6.55	2.02	4.6	95.4	0.0	-1.98	2.31	0.33	0.79	4.17	7032	450	6	0	0	0	3588	logfile
✔	8U5Y	41939	2024-04-15	2023-09-13	3.01	3.34	—	3.2	0.003	0.57	0.0	0.04	14.42	0.00	2.027	5.30	0.57	4.0	96.0	0.0	-1.43	0.86	0.83	3.28	3.2	0.003	0.53	0.0	0.04	14.83	0.00	1.969	6.40	0.78	5.1	94.9	0.0	-1.25	0.50	0.86	0.83	3.40	34491	2089	4	16	0	0	17152	logfile
✔	8U66	41946	2024-04-13	2023-09-13	2.21	2.31	2.31	2.3	0.004	0.56	0.0	0.09	16.75	0.00	1.869	2.66	0.28	3.4	96.6	0.0	2.01	0.71	0.83	4.97	2.3	0.002	0.54	0.0	0.04	17.14	0.00	1.939	5.62	2.01	3.2	96.8	0.0	1.41	0.26	0.77	0.87	5.06	29365	3584	24	0	16	981	0	logfile
✘	8WC3	37429	2024-04-06	2023-09-11	3.0	3.02	2.90	3.0	0.007	0.95	2.0	0.07	13.95	0.01	1.356	8.37	1.40	5.2	94.8	0.0	-1.08	0.66	0.73	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8418	1119	6	0	1	0	0	logfile

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