Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8WC3	37429	2024-04-06	2023-09-11	3.0	3.02	2.90	3.0	0.007	0.95	2.0	0.07	13.95	0.01	1.356	8.37	1.40	5.2	94.8	0.0	-1.08	0.66	0.73	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8418	1119	6	0	1	0	0	logfile
✔	8WCC	37438	2024-04-05	2023-09-11	3.04	2.88	1.90	3.2	0.017	2.05	5.0	0.15	16.41	0.02	2.464	8.33	2.87	9.2	90.8	0.0	-3.38	0.84	0.81	2.50	3.3	0.003	0.66	0.0	0.04	16.60	0.01	2.251	6.37	4.31	2.7	97.3	0.0	1.95	1.15	0.81	0.77	1.90	2056	270	2	0	1	0	0	logfile
✔	8WC4	37430	2024-04-06	2023-09-11	3.1	3.34	3.05	3.3	0.006	0.81	2.0	0.06	12.94	0.01	2.216	7.71	0.93	4.4	95.6	0.0	-0.26	0.69	0.85	3.75	3.3	0.003	0.56	0.0	0.04	15.00	0.00	2.198	4.77	1.63	3.0	97.0	0.0	0.61	0.93	0.72	0.88	2.89	8394	1110	6	0	1	0	0	logfile
✔	8WCB	37437	2024-04-06	2023-09-11	3.1	3.38	3.17	3.4	0.019	1.20	4.0	0.07	12.91	0.01	2.246	9.90	1.09	3.2	96.8	0.0	-0.88	0.59	0.67	3.20	3.4	0.004	0.61	0.0	0.04	14.38	0.00	2.083	13.74	2.59	3.8	96.2	0.0	-0.09	1.04	0.55	0.71	2.75	7784	1072	6	0	1	0	0	logfile
✔	8U4R	41892	2024-04-05	2023-09-11	3.1	3.43	3.14	3.4	0.003	0.67	0.0	0.05	14.01	0.01	2.165	4.99	0.00	3.6	96.4	0.0	0.38	0.65	0.85	3.13	3.4	0.003	0.54	0.0	0.04	15.78	0.00	2.242	4.75	1.79	3.4	96.6	0.0	1.05	0.94	0.67	0.88	2.75	4107	513	4	0	1	0	0	logfile
✘	8WC7	37433	2024-04-06	2023-09-11	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8532	1122	6	0	1	0	0	logfile
✔	8WC5	37431	2024-04-06	2023-09-11	3.3	2.84	2.93	3.0	0.006	1.09	3.0	0.08	14.80	0.01	2.206	10.49	1.80	6.6	93.4	0.0	-2.33	0.60	0.68	2.61	2.9	0.004	0.67	0.0	0.05	16.19	0.00	2.154	6.96	2.24	6.6	93.4	0.0	-1.02	1.29	0.62	0.72	2.09	8511	1111	6	0	1	0	0	logfile
✔	8U4P	41890	2024-04-06	2023-09-11	3.15	3.53	3.25	3.5	0.004	0.62	0.0	0.04	17.04	0.00	2.240	4.24	0.00	3.3	96.7	0.0	0.52	0.63	0.84	3.05	3.5	0.002	0.44	0.0	0.04	16.20	0.00	2.227	3.96	1.89	2.9	97.1	0.0	1.26	0.24	0.57	0.83	2.59	7006	892	5	0	2	0	0	logfile
✔	8U4T	41894	2024-04-12	2023-09-11	3.38	3.74	3.44	3.7	0.007	0.96	0.0	0.07	13.85	0.01	2.200	8.61	0.00	4.2	95.8	0.0	0.47	0.65	0.84	2.65	3.7	0.004	0.61	0.0	0.04	14.70	0.00	2.145	6.77	3.57	3.5	96.5	0.0	0.47	0.42	0.66	0.87	2.58	16968	2056	16	0	20	0	0	logfile
✔	8Qi7	18436	2024-04-08	2023-09-11	2.9	3.13	2.98	3.2	0.007	0.60	0.0	0.04	9.92	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.002	0.58	0.0	0.04	13.61	0.00	2.152	2.18	0.20	3.3	96.7	0.0	0.57	0.36	0.69	0.87	4.06	14609	1848	8	0	0	117	0	logfile
✔	8WC8	37434	2024-04-06	2023-09-11	2.9	3.26	2.95	3.2	0.013	0.85	5.0	0.06	12.50	0.01	2.252	9.20	0.26	2.5	97.5	0.0	1.02	0.66	0.81	3.77	3.2	0.005	0.62	0.0	0.04	15.66	0.00	2.085	10.56	2.87	3.4	96.6	0.0	0.71	0.90	0.59	0.82	3.38	8062	1101	6	0	1	0	0	logfile
✔	8WCA	37436	2024-04-06	2023-09-11	3.48	3.71	3.50	3.7	0.006	0.87	5.0	0.06	13.52	0.01	2.105	10.04	0.89	4.3	95.7	0.0	-0.41	0.66	0.74	1.96	3.7	0.004	0.61	0.0	0.04	15.00	0.00	2.072	8.64	2.67	4.1	95.9	0.0	0.17	0.36	0.68	0.79	1.22	8160	1110	6	0	1	0	0	logfile
✔	8WC6	37432	2024-04-07	2023-09-11	3.2	3.26	3.10	3.3	0.008	0.99	2.0	0.07	13.34	0.01	2.130	8.47	1.10	5.1	94.9	0.0	-0.22	0.72	0.84	3.41	3.3	0.004	0.58	0.0	0.04	14.94	0.00	2.248	4.46	1.21	4.8	95.2	0.0	0.20	0.96	0.72	0.87	2.97	9183	1241	7	0	1	0	0	logfile
✔	8WC9	37435	2024-04-06	2023-09-11	3.2	3.47	3.29	3.5	0.007	0.91	3.0	0.06	13.76	0.01	2.205	9.72	1.16	5.5	94.5	0.0	-0.70	0.65	0.83	3.84	3.5	0.002	0.54	0.0	0.04	15.32	0.00	2.149	6.54	0.93	3.2	96.8	0.0	0.00	0.95	0.62	0.83	2.46	8394	1107	6	0	1	0	0	logfile
✔	8U4S	41893	2024-04-10	2023-09-11	3.35	3.78	3.50	3.7	0.006	0.91	0.0	0.06	14.90	0.01	2.201	7.10	0.67	2.9	97.1	0.0	0.41	0.66	0.83	2.61	3.8	0.003	0.61	0.0	0.04	15.72	0.00	2.246	9.25	3.62	3.6	96.4	0.0	0.51	0.39	0.62	0.84	2.36	12684	1557	12	0	9	0	0	logfile
✔	8WBX	37426	2024-04-06	2023-09-10	3.23	3.53	3.23	3.5	0.003	0.66	0.0	0.04	16.96	0.00	2.305	10.08	0.38	1.6	98.4	0.0	1.77	0.48	0.63	1.04	3.5	0.003	0.61	0.0	0.04	16.34	0.00	2.228	11.56	5.16	2.7	97.3	0.0	1.44	0.55	0.50	0.66	1.19	7331	934	3	0	1	0	0	logfile
✔	8U4J	41884	2024-04-11	2023-09-10	3.7	4.14	3.77	4.0	0.014	1.54	3.0	0.09	16.95	0.01	2.219	0.90	0.17	2.3	97.7	0.0	-0.45	0.82	0.79	2.05	4.0	0.004	0.63	0.0	0.04	12.37	0.00	1.961	7.65	1.39	5.2	94.8	0.0	-1.22	1.49	0.82	0.78	2.42	20432	1297	20	0	58	0	9582	logfile
✔	8U4K	41885	2024-04-10	2023-09-10	4.27	4.73	4.32	4.3	0.013	1.64	1.0	0.09	16.02	0.02	2.383	1.03	0.19	3.8	96.2	0.0	-0.65	0.87	0.72	—	4.4	0.004	0.72	0.0	0.04	11.84	0.00	1.961	14.50	0.19	8.3	91.7	0.0	-1.79	3.58	0.87	0.76	—	19063	1228	15	0	35	0	9074	logfile
✔	8U4i	41883	2024-04-11	2023-09-10	3.38	3.92	3.46	3.8	0.014	1.56	0.0	0.09	16.96	0.01	2.351	0.62	0.35	2.0	98.0	0.0	-0.39	0.80	0.79	3.08	3.8	0.004	0.88	0.0	0.04	12.16	0.00	2.072	6.85	1.47	5.5	94.5	0.0	-1.43	1.22	0.75	0.75	2.77	20434	1301	20	0	57	0	9593	logfile
✔	8U4L	41886	2024-04-10	2023-09-10	3.31	3.91	3.35	3.7	0.013	1.52	2.0	0.09	15.71	0.01	2.364	1.08	0.09	2.0	98.0	0.0	-0.38	0.84	0.83	3.21	3.7	0.003	0.59	0.0	0.04	12.30	0.00	2.030	5.19	1.21	3.6	96.4	0.0	-0.57	1.21	0.81	0.83	3.29	19069	1230	15	0	35	0	9080	logfile

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