Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8U4B	41877	2024-04-12	2023-09-10	3.9	4.27	3.89	4.0	0.003	0.59	0.0	0.04	16.02	0.00	2.146	10.97	0.07	7.0	92.9	0.1	-0.95	0.87	0.82	2.05	4.0	0.002	0.60	0.0	0.04	16.27	0.00	2.173	10.59	1.75	6.4	93.5	0.1	-0.75	0.32	0.88	0.84	1.92	13212	1634	2	0	0	0	0	logfile
✔	8U4K	41885	2024-04-10	2023-09-10	4.27	4.73	4.32	4.3	0.013	1.64	1.0	0.09	16.02	0.02	2.383	1.03	0.19	3.8	96.2	0.0	-0.65	0.87	0.72	—	4.4	0.004	0.72	0.0	0.04	11.84	0.00	1.961	14.50	0.19	8.3	91.7	0.0	-1.79	3.58	0.87	0.76	—	19063	1228	15	0	35	0	9074	logfile
✔	8U4L	41886	2024-04-10	2023-09-10	3.31	3.91	3.35	3.7	0.013	1.52	2.0	0.09	15.71	0.01	2.364	1.08	0.09	2.0	98.0	0.0	-0.38	0.84	0.83	3.21	3.7	0.003	0.59	0.0	0.04	12.30	0.00	2.030	5.19	1.21	3.6	96.4	0.0	-0.57	1.21	0.81	0.83	3.29	19069	1230	15	0	35	0	9080	logfile
✔	8WBA	37418	2024-04-06	2023-09-09	3.1	3.27	3.07	3.3	0.002	0.54	0.0	0.04	16.65	0.00	2.289	9.38	0.32	1.6	98.4	0.0	1.56	0.62	0.79	2.30	3.3	0.003	0.57	0.0	0.04	16.90	0.00	2.177	9.61	4.38	2.4	97.6	0.0	1.68	0.25	0.62	0.81	2.12	8646	1106	3	0	2	0	0	logfile
✔	8QHP	18415	2024-04-06	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	3.3	0.002	0.46	0.0	0.04	14.74	0.00	2.182	7.06	0.98	1.2	98.8	0.0	2.54	0.85	0.74	0.84	3.33	6788	820	4	0	2	0	0	logfile
✔	8WAW	37407	2024-04-15	2023-09-08	3.02	3.29	3.17	3.3	0.005	0.71	0.0	0.05	15.44	0.00	1.829	10.58	1.25	4.0	95.8	0.2	0.50	0.60	0.58	2.12	3.2	0.008	0.67	0.0	0.04	17.62	0.00	1.718	31.03	3.09	6.0	93.9	0.1	0.35	0.78	0.82	0.87	2.18	35761	4182	24	109	11	0	23	logfile
✔	8WAT	37404	2024-04-15	2023-09-08	2.82	3.23	3.18	3.2	0.006	0.79	2.0	0.05	15.58	0.00	1.579	13.58	1.08	3.7	96.1	0.2	0.59	0.62	0.59	2.38	3.1	0.005	0.68	0.0	0.04	18.23	0.00	1.906	10.95	3.12	4.5	95.3	0.2	0.42	0.81	0.73	0.80	2.21	35676	4182	24	106	11	0	0	logfile
✔	8WAU	37405	2024-04-15	2023-09-08	2.78	3.17	2.87	3.2	0.008	0.81	0.0	0.05	15.38	0.00	1.850	10.31	1.38	3.9	95.9	0.2	0.44	0.52	0.55	2.36	3.1	0.005	0.56	0.0	0.04	17.90	0.00	1.791	27.87	3.25	5.3	94.5	0.2	0.63	1.53	0.74	0.84	2.40	35721	4182	25	107	11	0	23	logfile
✔	8WAY	37409	2024-04-15	2023-09-08	2.85	3.17	2.99	3.2	0.008	0.78	0.0	0.05	15.37	0.00	1.799	10.65	1.17	3.9	95.9	0.2	0.47	0.58	0.57	2.10	3.1	0.005	0.55	0.0	0.04	18.31	0.00	1.802	32.37	3.09	5.4	94.4	0.2	0.76	1.57	0.75	0.83	2.49	35753	4182	24	110	10	0	23	logfile
✔	8WAZ	37410	2024-04-15	2023-09-08	2.76	3.13	2.92	3.1	0.007	0.75	0.0	0.05	15.38	0.00	1.811	10.30	1.25	4.0	95.8	0.2	0.39	0.55	0.57	2.22	3.1	0.004	0.54	0.0	0.04	18.08	0.00	1.736	29.35	3.39	4.5	95.3	0.2	0.77	0.77	0.68	0.79	2.55	35753	4182	24	110	10	0	23	logfile
✔	8WAX	37408	2024-04-15	2023-09-08	2.75	3.13	2.90	3.1	0.008	0.78	0.0	0.05	15.32	0.00	1.838	10.51	1.25	4.0	95.8	0.2	0.46	0.55	0.56	2.34	3.1	0.008	0.68	0.0	0.05	18.05	0.00	1.744	28.18	4.04	5.5	94.2	0.2	0.26	1.53	0.68	0.79	2.72	35751	4182	24	110	10	0	23	logfile
✔	8WAV	37406	2024-04-15	2023-09-08	2.72	3.14	2.84	3.1	0.011	0.89	0.0	0.05	15.49	0.01	1.832	10.05	1.33	3.9	95.9	0.2	0.34	0.54	0.56	2.38	3.1	0.003	0.51	0.0	0.04	17.96	0.00	1.842	28.83	2.63	4.4	95.4	0.2	0.82	1.56	0.66	0.78	2.44	35741	4182	24	108	11	0	23	logfile
✔	8WB0	37411	2024-04-15	2023-09-08	2.94	3.19	3.00	3.2	0.007	0.73	0.0	0.05	15.57	0.00	1.845	10.47	1.17	4.0	95.8	0.2	0.50	0.58	0.56	2.46	3.1	0.003	0.52	0.0	0.04	18.17	0.00	1.852	32.13	3.69	4.8	95.0	0.2	0.67	1.55	0.80	0.85	2.28	35751	4182	24	110	10	0	23	logfile
✔	8U3B	41856	2024-04-15	2023-09-07	3.23	3.78	3.32	3.6	0.011	0.96	0.0	0.05	16.99	0.01	1.992	10.95	0.00	5.3	94.5	0.1	-0.98	0.86	0.89	2.37	3.6	0.006	0.65	0.0	0.04	17.88	0.00	1.995	8.03	1.15	5.2	94.7	0.0	0.27	1.32	0.85	0.90	1.94	33286	3858	12	140	4	0	0	logfile
✔	8QHD	18408	2024-04-14	2023-09-07	3.6	3.56	—	3.3	0.004	0.60	2.0	0.04	15.70	0.01	2.212	11.78	0.50	4.3	95.6	0.0	0.70	0.78	0.65	1.59	3.3	0.003	0.61	0.0	0.04	16.37	0.00	2.162	11.15	1.99	4.1	95.9	0.0	0.90	1.99	0.80	0.69	1.40	95348	11804	6	0	0	0	0	logfile
✔	8WAM	37397	2024-04-06	2023-09-07	3.23	3.48	3.24	3.5	0.002	0.45	0.0	0.04	17.90	0.00	2.211	5.64	0.11	1.7	98.3	0.0	1.70	0.60	0.77	1.11	3.5	0.002	0.52	0.0	0.04	17.76	0.00	2.029	5.99	2.25	2.2	97.8	0.0	1.17	0.40	0.59	0.78	1.15	8650	1102	4	0	4	0	0	logfile
✔	8QHC	18407	2024-04-08	2023-09-07	3.1	3.05	2.90	2.9	0.006	0.65	0.0	0.04	19.59	0.02	1.929	10.07	0.00	3.2	96.7	0.1	1.43	0.82	0.85	2.76	2.9	0.003	0.72	0.0	0.04	19.62	0.01	1.930	9.31	2.63	3.2	96.8	0.0	1.54	0.28	0.79	0.78	2.79	14829	1764	5	61	2	0	0	logfile
✔	8WA5	37391	2024-04-10	2023-09-07	2.51	2.71	2.50	2.7	0.004	1.10	0.0	0.04	16.21	0.01	1.926	4.94	0.85	2.3	97.7	0.0	1.17	0.66	0.84	3.96	2.8	0.003	0.78	0.0	0.04	16.61	0.00	2.024	5.09	2.63	2.7	97.3	0.0	1.11	1.21	0.69	0.88	3.99	9929	1249	5	0	12	6	0	logfile
✔	8WA0	37387	2024-04-07	2023-09-06	2.7	3.55	2.95	3.1	0.015	1.73	88.0	0.15	13.64	0.01	1.455	4.86	5.39	2.7	97.3	0.0	0.57	0.82	0.84	3.04	3.1	0.002	0.60	0.0	0.04	14.97	0.00	2.030	6.69	1.79	2.9	97.1	0.0	0.89	1.07	0.83	0.87	2.83	61128	8354	26	19	4	0	0	logfile
✔	8QH3	18397	2024-04-07	2023-09-06	2.81	2.85	2.77	2.8	0.003	0.55	0.0	0.04	17.22	0.01	2.038	7.58	2.16	2.5	97.5	0.0	0.67	0.75	0.81	2.71	2.8	0.003	0.51	0.0	0.04	17.69	0.00	2.038	8.61	3.02	2.5	97.5	0.1	1.27	0.42	0.77	0.85	3.61	10796	1310	3	11	1	0	0	logfile

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