Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RQF	19440	2024-04-06	2024-01-18	3.41	3.69	3.47	3.7	0.004	0.67	0.0	0.04	16.11	0.00	2.216	9.23	0.26	4.7	95.3	0.0	-0.42	0.63	0.83	2.35	3.7	0.003	0.54	0.0	0.04	16.36	0.00	2.209	7.29	2.59	5.4	94.6	0.0	-0.29	0.29	0.63	0.83	2.31	6950	903	7	0	1	1	0	logfile
✘	8RQ4	19433	2024-04-07	2024-01-17	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11210	1402	2	0	3	0	0	logfile
✔	8RQ3	19431	2024-04-07	2024-01-17	3.21	3.47	3.25	3.5	0.009	0.81	0.0	0.05	14.58	0.00	2.149	9.58	0.00	6.2	93.8	0.0	-0.39	0.61	0.85	2.21	3.5	0.003	0.55	0.0	0.04	16.39	0.00	2.225	6.42	1.58	4.2	95.8	0.0	1.78	0.73	0.53	0.80	0.98	11375	1432	1	0	0	0	0	logfile
✔	8XV9	38693	2024-04-05	2024-01-14	3.8	2.50	3.79	2.0	0.008	0.94	0.0	0.05	12.31	0.01	2.402	2.22	0.00	5.5	94.5	0.0	-3.53	0.58	0.61	1.87	2.9	0.003	0.74	0.0	0.04	16.67	0.00	2.238	11.72	3.00	4.7	95.3	0.0	1.29	0.80	0.60	0.64	1.72	3147	388	2	0	1	0	0	logfile
✔	8XV5	38692	2024-04-05	2024-01-14	3.7	2.43	3.72	2.9	0.005	0.90	0.0	0.05	9.70	0.01	2.280	3.19	0.00	4.4	95.6	0.0	-3.67	0.68	0.71	3.33	2.1	0.011	1.40	1.0	0.05	15.38	0.01	2.236	11.49	2.70	2.9	97.1	0.0	1.20	0.65	0.69	0.72	3.08	3122	388	2	0	1	0	0	logfile
✔	8XV2	38691	2024-04-05	2024-01-14	3.7	2.50	3.71	2.8	0.009	0.99	0.0	0.06	9.84	0.01	2.318	2.55	0.00	5.2	94.8	0.0	-3.54	0.65	0.73	3.48	2.1	0.003	0.64	0.0	0.04	15.10	0.00	2.306	11.47	1.80	4.2	95.8	0.0	1.00	1.26	0.65	0.73	2.18	3128	388	2	0	1	0	0	logfile
✔	8VJK	43284	2024-04-16	2024-01-07	2.92	3.34	3.08	3.0	0.003	0.69	0.0	0.04	14.13	0.00	1.955	5.07	0.05	1.9	98.1	0.0	2.22	0.89	0.89	3.55	3.0	0.007	0.62	0.0	0.04	15.40	0.00	2.060	6.04	0.80	2.1	97.9	0.0	1.90	0.35	0.91	0.93	3.60	143248	17920	12	0	28	0	0	logfile
✔	8VJC	43280	2024-04-09	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.006	0.71	0.0	0.05	16.22	0.00	2.147	17.93	2.75	9.5	90.3	0.2	-1.84	0.37	0.85	0.82	1.78	13927	1726	5	0	0	0	0	logfile
✔	8VJB	43279	2024-04-10	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.003	0.61	0.0	0.04	17.28	0.00	2.132	13.67	3.15	8.1	91.7	0.2	-1.53	1.57	0.88	0.84	1.86	14688	1824	6	0	0	0	0	logfile
✔	8ViB	43256	2024-04-05	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.003	0.72	0.0	0.04	5.08	0.00	2.217	11.42	0.00	10.9	88.4	0.7	-0.28	2.87	0.49	0.83	—	4421	888	6	0	7	0	0	logfile
✔	8XoP	38537	2024-04-10	2024-01-02	2.8	3.94	2.89	3.5	0.005	0.69	0.0	0.04	12.47	0.01	2.120	10.63	0.00	2.0	97.9	0.0	1.41	0.85	0.87	2.82	3.5	0.004	0.77	0.0	0.04	16.03	0.00	2.186	13.60	3.47	2.6	97.4	0.0	1.44	0.97	0.86	0.89	2.52	19740	2562	28	0	14	0	0	logfile
✔	8XN4	38497	2024-04-10	2023-12-29	2.34	2.61	2.44	2.2	0.005	0.81	1.0	0.05	18.21	0.01	2.200	11.08	3.23	2.5	97.4	0.1	1.34	0.86	0.87	3.46	2.2	0.003	0.71	0.0	0.04	18.13	0.00	2.168	9.93	3.72	2.1	97.9	0.0	1.93	0.95	0.86	0.87	2.68	19173	2506	14	0	0	0	0	logfile
✔	8VGT	43224	2024-04-05	2023-12-27	2.9	3.22	2.90	3.2	0.011	1.30	1.0	0.07	10.51	0.01	2.374	2.03	0.70	3.9	95.6	0.5	-0.41	0.68	0.77	5.20	3.2	0.003	0.61	0.0	0.05	14.07	0.00	2.233	4.62	2.56	2.9	97.1	0.0	-0.18	1.15	0.62	0.77	4.52	4714	629	4	0	5	0	0	logfile
✔	8XMN	38483	2024-04-08	2023-12-27	3.37	3.70	3.48	3.6	0.012	1.29	4.0	0.08	17.91	0.01	2.202	20.51	2.34	6.6	93.2	0.2	-1.12	0.57	0.80	1.93	3.6	0.003	0.69	0.0	0.04	17.77	0.00	2.212	13.00	2.34	4.8	95.2	0.0	-0.02	0.55	0.58	0.82	1.45	13110	1569	7	0	18	0	0	logfile
✔	8XMo	38484	2024-04-08	2023-12-27	3.39	3.66	3.42	3.6	0.015	1.57	13.0	0.09	18.70	0.01	2.039	20.52	2.81	4.9	95.0	0.1	-0.94	0.65	0.80	1.74	3.6	0.003	0.63	0.0	0.04	17.49	0.00	2.139	11.77	2.39	3.5	96.5	0.0	0.17	1.22	0.63	0.81	1.75	13323	1578	7	0	22	0	0	logfile
✔	8XMM	38482	2024-04-07	2023-12-27	2.89	3.35	2.94	3.2	0.010	1.15	0.0	0.06	21.27	0.01	2.077	12.01	0.34	3.7	96.3	0.0	0.13	0.64	0.83	2.63	3.2	0.005	0.64	0.0	0.04	18.84	0.00	2.166	7.87	1.78	4.1	95.9	0.0	1.00	0.43	0.56	0.80	2.62	11389	1318	6	0	28	0	0	logfile
✔	8XMH	38477	2024-04-12	2023-12-27	2.85	3.05	2.86	3.1	0.004	0.53	0.0	0.04	10.95	0.00	2.290	3.16	1.55	2.7	97.3	0.0	-1.68	0.71	0.81	3.33	3.1	0.003	0.56	0.0	0.04	15.51	0.00	2.213	7.52	2.44	3.1	96.9	0.0	1.26	0.68	0.74	0.87	2.70	26948	3444	24	0	16	0	0	logfile
✔	8XMi	38478	2024-04-12	2023-12-27	3.0	3.24	3.00	3.2	0.004	0.60	0.0	0.04	11.90	0.00	2.262	3.82	1.56	3.0	97.0	0.0	-2.19	0.74	0.83	3.59	3.2	0.003	0.57	0.0	0.04	15.61	0.00	2.157	8.37	2.36	2.6	97.4	0.0	0.77	1.05	0.74	0.87	2.75	26718	3415	24	0	16	0	0	logfile
✔	8XJo	38403	2024-04-06	2023-12-21	3.11	3.33	3.18	3.3	0.006	0.62	0.0	0.15	8.84	0.00	2.213	5.30	1.06	1.2	98.8	0.0	1.07	0.65	0.80	3.29	3.3	0.004	0.59	0.0	0.04	14.07	0.00	2.108	7.62	3.70	1.7	98.3	0.0	1.36	0.60	0.65	0.81	2.63	8950	1164	6	0	1	0	0	logfile
✔	8RJL	19251	2024-04-15	2023-12-21	3.34	3.79	3.44	3.8	0.012	1.32	12.0	0.07	16.84	0.01	1.607	10.76	4.59	12.5	86.4	1.1	-5.23	0.66	0.76	1.32	3.8	0.003	0.79	0.0	0.04	17.00	0.00	2.025	4.52	2.34	4.4	95.6	0.0	0.17	0.64	0.62	0.73	0.77	36300	4575	18	0	0	0	0	logfile

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