Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V88	43030	2024-04-15	2023-12-05	2.3	2.36	2.26	2.3	0.033	0.98	0.0	0.06	18.17	0.01	2.299	3.68	0.00	3.6	96.4	0.0	-0.70	0.73	0.84	4.91	2.3	0.003	0.65	0.0	0.04	18.27	0.00	2.128	5.22	0.34	1.6	98.4	0.0	0.89	0.38	0.73	0.86	4.86	33190	1970	25	0	60	100	15865	logfile
✔	8RBZ	19040	2024-04-11	2023-12-05	3.7	3.61	3.88	3.2	0.004	0.85	0.0	0.05	13.32	0.01	2.184	2.46	0.25	3.5	96.5	0.0	1.71	0.79	0.69	1.36	3.2	0.003	0.65	0.0	0.04	15.01	0.00	2.032	10.07	1.72	3.9	96.1	0.0	1.66	0.62	0.80	0.70	1.27	74102	10096	23	0	13	0	0	logfile
✔	8RC0	19041	2024-04-16	2023-12-05	3.2	3.29	3.19	3.2	0.005	0.74	1.0	0.05	16.76	0.00	2.075	10.30	3.47	3.3	96.6	0.1	-0.35	0.68	0.65	2.60	3.2	0.013	0.87	1.0	0.06	17.00	0.01	1.988	12.19	4.71	4.6	95.4	0.0	0.18	1.09	0.70	0.67	2.54	40648	6394	16	104	1	0	0	logfile
✔	8RBX	19038	2024-04-10	2023-12-05	4.1	4.04	3.99	7.7	0.007	0.91	2.0	0.07	18.74	0.01	2.138	5.09	0.56	4.8	95.2	0.0	-0.02	0.71	0.32	—	3.0	0.010	1.06	1.0	0.05	16.40	0.01	1.822	33.06	0.00	6.7	93.1	0.2	-0.59	1.81	0.77	0.55	—	129226	16906	56	326	76	0	0	logfile
✔	8V8D	43035	2024-04-14	2023-12-05	3.31	2.50	3.43	3.4	0.012	1.07	0.0	0.06	13.25	0.01	2.196	4.47	0.12	3.4	96.6	0.0	-1.57	0.66	0.72	3.33	3.3	0.003	0.55	0.0	0.04	14.04	0.00	2.057	7.36	0.82	3.3	96.7	0.0	0.26	0.69	0.70	0.77	3.02	30774	1886	15	0	33	0	15085	logfile
✔	8V86	43025	2024-04-15	2023-12-04	2.47	2.51	2.39	2.5	0.031	0.95	0.0	0.06	18.45	0.01	2.384	4.87	0.00	3.6	96.4	0.0	-1.05	0.67	0.81	4.37	2.5	0.003	0.64	0.0	0.04	17.80	0.00	2.120	5.63	0.95	1.9	98.1	0.0	0.72	0.34	0.72	0.85	4.25	33020	1970	25	0	50	65	15835	logfile
✘	8V7L	43003	2024-04-12	2023-12-04	2.9	3.39	2.93	3.1	0.010	1.36	0.0	0.08	21.51	0.01	2.316	1.99	2.32	3.6	96.2	0.3	-1.48	0.76	0.57	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25545	1203	12	280	2	0	10096	logfile
✔	8V82	43015	2024-04-15	2023-12-04	2.61	2.68	2.57	2.7	0.012	1.10	0.0	0.06	19.23	0.01	2.199	2.18	0.00	3.1	96.9	0.0	-1.47	0.67	0.79	4.20	2.7	0.003	0.55	0.0	0.04	15.26	0.00	1.995	8.87	0.62	2.3	97.7	0.0	0.16	1.18	0.69	0.81	4.37	33265	1970	25	0	65	45	15825	logfile
✔	8V80	43012	2024-04-15	2023-12-04	2.34	2.34	2.25	2.3	0.014	1.16	0.0	0.07	17.79	0.01	2.331	3.29	0.00	2.8	97.2	0.0	-1.28	0.69	0.79	5.40	2.3	0.003	0.60	0.0	0.04	14.54	0.00	2.127	6.92	0.62	1.7	98.3	0.0	0.73	1.59	0.69	0.80	5.19	33080	1970	25	0	60	55	15835	logfile
✔	8RB5	19026	2024-04-06	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.002	0.55	0.0	0.03	17.49	0.00	2.233	8.44	1.71	2.4	97.6	0.0	2.04	1.43	0.30	0.80	2.10	8772	540	3	0	0	0	4422	logfile
✘	8V6V	43002	2024-04-16	2023-12-03	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37004	1673	14	294	4	0	17362	logfile
✔	8RB7	19027	2024-04-05	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.56	0.0	0.03	17.84	0.01	2.007	8.72	0.96	2.5	97.5	0.0	2.16	2.08	0.28	0.76	1.47	5848	360	2	0	0	0	2948	logfile
✔	8RB4	19025	2024-04-08	2023-12-02	3.2	3.79	3.35	3.7	0.014	1.83	0.0	0.10	14.38	0.02	2.509	0.68	0.51	3.4	96.6	0.0	-1.19	0.47	0.73	1.91	3.7	0.004	0.63	0.0	0.04	17.49	0.00	1.923	12.45	2.95	2.5	97.3	0.2	1.21	2.24	0.49	0.79	1.49	14620	900	5	0	0	0	7370	logfile
✔	8RAS	19023	2024-04-06	2023-12-01	2.62	2.31	—	1.7	0.003	0.51	0.0	0.04	17.48	0.00	1.980	7.95	0.93	3.1	96.9	0.1	0.61	0.78	0.80	3.20	1.5	0.005	0.63	0.0	0.05	18.06	0.00	1.908	9.19	2.11	3.7	96.2	0.0	0.45	0.44	0.81	0.88	3.68	57315	6830	45	81	4	254	0	logfile
✘	8X91	38159	2024-04-11	2023-11-29	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22269	2691	11	0	29	0	0	logfile
✔	8V4Y	42977	2024-04-13	2023-11-29	2.8	3.26	2.84	3.0	0.011	1.33	0.0	0.08	20.03	0.01	1.852	1.67	0.67	3.7	96.2	0.2	-1.09	0.81	0.68	4.37	3.0	0.004	0.62	0.0	0.04	24.13	0.00	1.858	3.09	0.95	4.2	95.7	0.2	1.52	2.11	0.90	0.88	3.39	29426	1219	12	294	3	0	13550	logfile
✘	8X90	38158	2024-04-11	2023-11-29	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22122	2665	10	0	29	0	0	logfile
✘	8X93	38160	2024-04-11	2023-11-29	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21976	2659	10	0	28	0	0	logfile
✔	8R8D	18999	2024-04-06	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.005	0.73	0.0	0.05	15.12	0.01	2.151	9.07	3.03	5.1	94.9	0.0	0.15	0.31	0.68	0.82	3.22	7062	920	14	0	12	18	0	logfile
✔	8X84	38135	2024-04-12	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.41	0.0	0.03	15.07	0.00	2.042	3.38	0.38	0.3	99.7	0.0	3.56	0.49	0.60	0.80	2.63	24534	1524	12	0	6	4	12444	logfile

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