Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCV	38256	2024-04-05	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.99	0.00	2.314	5.62	0.29	1.9	98.1	0.0	2.11	0.38	0.48	0.91	4.34	3310	415	2	0	1	7	0	logfile
✔	8XCS	38253	2024-04-05	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.004	0.55	0.0	0.04	16.47	0.00	2.262	4.36	1.17	2.2	97.8	0.0	1.28	0.88	0.50	0.93	5.61	3360	418	2	0	3	20	0	logfile
✔	8XD4	38265	2024-04-05	2023-12-10	2.87	3.04	—	3.0	0.007	0.82	0.0	0.05	17.18	0.00	2.325	5.57	3.81	3.4	96.6	0.0	1.29	0.44	0.86	4.02	3.0	0.002	0.50	0.0	0.04	17.47	0.00	2.319	6.33	0.59	2.6	97.1	0.2	2.03	1.63	0.43	0.89	3.89	3342	418	2	0	2	11	0	logfile
✔	8XCY	38259	2024-04-05	2023-12-10	2.91	3.04	1.04	3.0	0.008	0.83	0.0	0.05	17.01	0.00	2.241	6.53	3.56	3.1	96.9	0.0	0.91	0.43	0.86	3.94	3.0	0.003	0.53	0.0	0.04	16.86	0.00	2.254	5.47	1.19	3.6	96.4	0.0	1.35	0.59	0.44	0.90	4.28	3311	416	2	0	2	8	0	logfile
✔	8XD2	38263	2024-04-05	2023-12-10	2.64	3.04	—	3.0	0.009	0.88	0.0	0.05	17.62	0.00	2.449	4.72	3.56	3.9	96.1	0.0	0.83	0.45	0.88	4.08	3.0	0.004	0.57	0.0	0.04	17.04	0.00	2.273	5.33	0.89	2.7	97.3	0.0	1.85	0.55	0.43	0.89	3.77	3305	416	2	0	2	9	0	logfile
✔	8REE	19084	2024-04-13	2023-12-10	3.8	4.28	4.01	4.1	0.003	0.64	0.0	0.04	19.58	0.01	1.936	11.03	0.38	5.7	94.3	0.1	-0.72	0.61	0.35	-0.14	3.9	0.004	0.80	0.0	0.04	19.80	0.00	1.996	17.32	3.25	7.3	92.6	0.1	-1.09	1.48	0.88	0.83	0.99	28605	3617	10	103	3	0	0	logfile
✔	8RE4	19079	2024-04-13	2023-12-10	2.8	3.82	2.89	3.0	0.006	0.84	0.0	0.06	18.84	0.01	1.931	14.53	1.66	6.1	93.7	0.2	-0.49	0.86	0.81	2.10	3.1	0.004	0.65	0.0	0.04	18.91	0.00	1.969	8.69	2.55	6.3	93.7	0.0	0.21	2.26	0.92	0.88	2.17	29165	3667	10	102	3	0	0	logfile
✔	8RDV	19076	2024-04-15	2023-12-08	2.6	2.66	2.63	2.6	0.006	0.69	0.0	0.04	23.31	0.01	1.944	7.77	4.14	4.1	95.8	0.1	-0.80	0.81	0.87	4.02	2.7	0.005	0.62	0.0	0.04	22.97	0.01	1.942	7.93	4.90	3.8	96.2	0.1	-0.08	0.22	0.83	0.88	3.94	142063	6097	56	4410	0	0	0	logfile
✔	8RDW	19077	2024-04-15	2023-12-08	2.74	2.76	2.74	2.7	0.004	0.61	0.0	0.04	23.10	0.01	2.002	7.77	2.39	3.8	96.2	0.0	-1.60	0.83	0.87	3.46	2.7	0.005	0.66	0.0	0.04	22.88	0.01	1.948	8.06	4.32	4.2	95.8	0.0	-0.30	0.77	0.83	0.87	3.46	142686	6349	58	4348	1	1	0	logfile
✔	8XBT	38228	2024-04-13	2023-12-07	4.12	5.03	3.94	4.6	0.011	1.50	5.0	0.08	23.16	0.04	1.066	9.06	2.05	4.2	95.8	0.0	-1.25	0.87	0.77	—	4.6	0.007	0.76	0.0	0.04	23.03	0.00	2.070	22.04	0.00	3.9	96.1	0.0	-0.21	1.73	0.87	0.79	—	27776	2770	18	309	0	0	0	logfile
✘	8XBX	38232	2024-04-05	2023-12-07	4.36	6.89	4.04	7.5	0.005	0.90	0.0	0.04	18.16	0.01	2.260	13.70	0.00	0.9	99.1	0.0	-0.16	0.65	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5873	663	5	38	0	0	0	logfile
✔	8XBU	38229	2024-04-14	2023-12-07	4.24	5.02	4.02	4.6	0.009	0.95	26.0	0.09	20.92	0.02	1.118	17.68	0.15	1.0	99.0	0.0	-0.07	0.87	0.79	—	4.6	0.005	0.70	0.0	0.04	21.18	0.00	2.116	20.07	0.00	2.7	97.3	0.0	0.72	1.42	0.88	0.80	—	32567	3398	20	309	0	0	0	logfile
✔	8XBW	38231	2024-04-05	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.006	1.32	0.0	0.06	23.79	0.01	2.204	30.68	2.48	2.5	97.5	0.0	-2.45	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile
✔	8RD8	19067	2024-04-14	2023-12-07	2.62	2.60	2.60	2.6	0.007	0.74	0.0	0.05	23.49	0.01	1.872	7.58	7.16	4.0	95.8	0.2	-0.73	0.79	0.86	3.72	2.6	0.005	0.63	0.0	0.04	23.01	0.01	1.901	7.38	5.26	4.0	95.9	0.1	-0.08	0.17	0.79	0.83	3.79	141222	6211	56	4323	2	0	0	logfile
✔	8XBi	38219	2024-04-05	2023-12-06	3.06	2.87	3.01	3.0	0.013	1.26	0.0	0.07	13.63	0.01	2.221	7.35	0.00	1.7	98.3	0.0	1.92	0.37	0.67	0.71	3.0	0.002	0.51	0.0	0.04	16.58	0.00	2.210	9.13	2.18	2.0	98.0	0.0	2.23	0.43	0.48	0.72	0.93	2467	298	2	0	1	0	0	logfile
✔	8RC4	19047	2024-04-11	2023-12-06	3.1	4.01	2.99	7.5	0.005	0.80	0.0	0.05	15.58	0.01	2.017	2.88	0.10	3.9	96.0	0.0	0.73	0.69	0.31	-0.03	2.5	0.004	0.80	0.0	0.05	16.44	0.00	1.436	21.80	1.52	4.4	95.6	0.0	-0.06	1.35	0.82	0.64	0.61	78273	11105	18	0	4	0	0	logfile
✔	8XBH	38218	2024-04-06	2023-12-06	2.83	2.95	2.88	3.0	0.004	0.70	0.0	0.04	13.23	0.00	2.151	10.57	0.00	3.8	96.1	0.1	0.30	0.49	0.70	2.33	3.1	0.003	0.68	0.0	0.04	16.57	0.00	2.174	11.87	2.36	3.7	96.2	0.1	0.38	0.51	0.52	0.74	1.75	8947	1137	6	0	1	0	0	logfile
✔	8V8D	43035	2024-04-14	2023-12-05	3.31	2.50	3.43	3.4	0.012	1.07	0.0	0.06	13.25	0.01	2.196	4.47	0.12	3.4	96.6	0.0	-1.57	0.66	0.72	3.33	3.3	0.003	0.55	0.0	0.04	14.04	0.00	2.057	7.36	0.82	3.3	96.7	0.0	0.26	0.69	0.70	0.77	3.02	30774	1886	15	0	33	0	15085	logfile
✔	8V8A	43032	2024-04-15	2023-12-05	2.19	1.99	2.21	2.0	0.012	1.16	0.0	0.06	19.81	0.01	2.220	4.07	0.56	2.1	97.9	0.0	-0.64	0.67	0.80	6.21	2.0	0.003	0.56	0.0	0.04	15.93	0.00	2.035	8.48	0.67	1.5	98.5	0.0	1.10	1.90	0.68	0.82	5.81	33560	1970	25	0	65	155	15935	logfile
✔	8V89	43031	2024-04-15	2023-12-05	2.53	2.23	2.64	2.3	0.008	0.98	0.0	0.06	15.42	0.01	2.287	4.68	0.56	4.1	95.9	0.0	-1.75	0.63	0.80	5.26	2.3	0.004	0.61	0.0	0.04	15.68	0.00	1.974	7.50	1.73	1.6	98.4	0.0	1.14	0.46	0.65	0.83	5.08	32725	1970	25	0	40	70	15855	logfile

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