Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VAT	43102	2024-04-10	2023-12-11	3.2	3.36	3.19	3.4	0.005	0.72	0.0	0.04	16.28	0.00	1.709	12.31	0.00	4.6	95.3	0.1	0.21	0.70	0.78	1.80	3.4	0.003	0.60	0.0	0.04	17.65	0.00	1.014	12.44	2.05	3.6	96.3	0.1	0.74	0.97	0.70	0.80	1.67	19423	2393	13	31	13	0	0	logfile
✔	8XCZ	38260	2024-04-05	2023-12-10	2.83	3.03	1.04	3.0	0.007	0.74	0.0	0.05	17.16	0.01	2.428	5.92	3.85	3.6	96.4	0.0	1.41	0.43	0.88	4.78	3.0	0.004	0.51	0.0	0.04	17.29	0.00	2.214	5.16	1.78	2.7	97.3	0.0	1.62	0.35	0.43	0.91	3.87	3324	416	2	0	2	17	0	logfile
✔	8XCY	38259	2024-04-05	2023-12-10	2.91	3.04	1.04	3.0	0.008	0.83	0.0	0.05	17.01	0.00	2.241	6.53	3.56	3.1	96.9	0.0	0.91	0.43	0.86	3.94	3.0	0.003	0.53	0.0	0.04	16.86	0.00	2.254	5.47	1.19	3.6	96.4	0.0	1.35	0.59	0.44	0.90	4.28	3311	416	2	0	2	8	0	logfile
✔	8REA	19080	2024-04-13	2023-12-10	3.4	3.79	3.47	3.4	0.003	0.60	0.0	0.04	18.95	0.01	2.108	8.71	0.23	5.6	94.4	0.0	-0.46	0.79	0.76	1.73	3.4	0.005	0.66	0.0	0.04	19.08	0.00	1.954	10.40	3.56	7.1	92.8	0.0	-0.13	2.03	0.88	0.87	1.64	28821	3668	10	100	3	0	0	logfile
✔	8REB	19081	2024-04-13	2023-12-10	3.4	3.95	3.51	4.1	0.005	0.71	0.0	0.04	19.20	0.01	2.006	10.84	0.38	6.7	93.3	0.0	-0.58	0.63	0.34	0.40	3.5	0.004	0.80	0.0	0.04	19.54	0.00	1.958	18.09	1.92	6.2	93.8	0.0	-0.55	5.23	0.88	0.83	1.09	28681	3638	10	101	3	0	0	logfile
✔	8XD6	38267	2024-04-05	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.015	1.12	1.0	0.04	16.59	0.01	0.945	8.37	1.46	1.7	98.3	0.0	1.45	0.41	0.48	0.93	4.61	3402	419	2	0	4	44	0	logfile
✔	8XCX	38258	2024-04-05	2023-12-10	2.83	3.04	1.04	3.0	0.008	0.84	0.0	0.05	16.53	0.01	2.405	6.53	2.96	2.9	97.1	0.0	1.08	0.44	0.88	4.21	3.0	0.003	0.49	0.0	0.04	16.75	0.00	2.260	6.37	1.18	2.7	97.3	0.0	1.68	1.13	0.41	0.89	3.60	3329	416	2	0	2	25	0	logfile
✔	8VA1	43083	2024-04-10	2023-12-10	3.4	2.40	3.58	2.1	0.010	0.67	0.0	0.05	16.59	0.00	2.111	12.42	0.49	5.5	94.5	0.0	-0.47	0.76	0.76	2.31	2.1	0.003	0.61	0.0	0.04	17.10	0.00	2.103	11.93	3.53	5.4	94.6	0.0	-0.19	0.35	0.76	0.76	2.07	18726	2230	8	0	4	0	0	logfile
✔	8XCU	38255	2024-04-05	2023-12-10	2.83	3.05	1.05	3.0	0.009	1.11	0.0	0.06	16.31	0.01	2.476	4.65	5.00	2.2	97.8	0.0	1.25	0.45	0.87	4.12	3.0	0.003	0.54	0.0	0.04	16.45	0.00	2.242	7.50	0.29	3.9	95.9	0.2	1.64	0.62	0.46	0.91	4.05	3370	417	2	0	3	20	0	logfile
✔	8XCT	38254	2024-04-05	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.004	0.54	0.0	0.04	16.84	0.00	2.175	5.27	1.76	3.6	96.1	0.2	1.37	1.56	0.43	0.89	4.05	3358	417	2	0	1	28	0	logfile
✔	8XD5	38266	2024-04-05	2023-12-10	2.75	2.93	1.08	2.9	0.005	0.73	0.0	0.05	16.88	0.00	2.447	6.29	3.80	3.4	96.6	0.0	0.89	0.49	0.90	5.03	2.8	0.003	0.50	0.0	0.04	16.49	0.00	2.242	5.09	0.88	1.7	98.3	0.0	1.68	1.00	0.48	0.93	4.85	3378	419	2	0	2	31	0	logfile
✔	8XCo	38249	2024-04-05	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.004	0.52	0.0	0.04	17.32	0.00	2.279	5.13	0.59	2.2	97.8	0.0	1.76	0.57	0.50	0.93	4.53	3335	416	2	0	1	14	0	logfile
✔	8REC	19082	2024-04-13	2023-12-10	3.5	3.87	3.47	3.5	0.005	0.77	0.0	0.04	19.11	0.01	2.010	11.06	0.37	5.8	94.2	0.0	-0.57	0.82	0.76	1.44	3.5	0.003	0.61	0.0	0.04	19.03	0.00	1.993	11.22	2.61	5.7	94.3	0.1	0.11	0.52	0.87	0.84	1.30	28965	3635	10	104	3	0	0	logfile
✔	8XCW	38257	2024-04-05	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.004	0.51	0.0	0.04	16.81	0.00	2.215	6.94	2.95	2.4	97.6	0.0	2.00	0.42	0.49	0.92	3.47	3347	416	2	0	2	17	0	logfile
✔	8REE	19084	2024-04-13	2023-12-10	3.8	4.28	4.01	4.1	0.003	0.64	0.0	0.04	19.58	0.01	1.936	11.03	0.38	5.7	94.3	0.1	-0.72	0.61	0.35	-0.14	3.9	0.004	0.80	0.0	0.04	19.80	0.00	1.996	17.32	3.25	7.3	92.6	0.1	-1.09	1.48	0.88	0.83	0.99	28605	3617	10	103	3	0	0	logfile
✔	8RE4	19079	2024-04-13	2023-12-10	2.8	3.82	2.89	3.0	0.006	0.84	0.0	0.06	18.84	0.01	1.931	14.53	1.66	6.1	93.7	0.2	-0.49	0.86	0.81	2.10	3.1	0.004	0.65	0.0	0.04	18.91	0.00	1.969	8.69	2.55	6.3	93.7	0.0	0.21	2.26	0.92	0.88	2.17	29165	3667	10	102	3	0	0	logfile
✔	8XCQ	38251	2024-04-05	2023-12-10	2.6	2.77	—	2.7	0.009	0.92	0.0	0.05	17.87	0.00	2.433	6.08	4.15	4.8	95.2	0.0	0.64	0.48	0.88	4.78	2.7	0.002	0.53	0.0	0.04	17.09	0.00	2.204	5.47	0.30	2.9	97.1	0.0	1.86	1.01	0.50	0.92	4.01	3312	416	2	0	3	6	0	logfile
✔	8XD2	38263	2024-04-05	2023-12-10	2.64	3.04	—	3.0	0.009	0.88	0.0	0.05	17.62	0.00	2.449	4.72	3.56	3.9	96.1	0.0	0.83	0.45	0.88	4.08	3.0	0.004	0.57	0.0	0.04	17.04	0.00	2.273	5.33	0.89	2.7	97.3	0.0	1.85	0.55	0.43	0.89	3.77	3305	416	2	0	2	9	0	logfile
✔	8XD4	38265	2024-04-05	2023-12-10	2.87	3.04	—	3.0	0.007	0.82	0.0	0.05	17.18	0.00	2.325	5.57	3.81	3.4	96.6	0.0	1.29	0.44	0.86	4.02	3.0	0.002	0.50	0.0	0.04	17.47	0.00	2.319	6.33	0.59	2.6	97.1	0.2	2.03	1.63	0.43	0.89	3.89	3342	418	2	0	2	11	0	logfile
✔	8XCR	38252	2024-04-05	2023-12-10	2.6	2.74	—	2.7	0.006	0.77	0.0	0.05	18.07	0.00	2.405	8.56	6.45	3.6	96.4	0.0	0.58	0.46	0.89	4.47	2.7	0.004	0.56	0.0	0.04	16.21	0.00	2.256	4.21	0.88	1.7	98.3	0.0	1.49	1.16	0.49	0.93	5.30	3360	418	2	0	2	21	0	logfile

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