Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V4N	42974	2024-06-24	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.7	0.002	0.48	0.0	0.04	17.48	0.00	2.303	2.19	0.47	1.5	98.5	0.0	0.99	0.99	0.31	0.86	3.13	2067	263	1	0	0	0	0	logfile
✔	8R8D	18999	2024-06-25	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.005	0.73	0.0	0.05	15.12	0.01	2.151	9.07	3.03	5.1	94.9	0.0	0.15	0.31	0.68	0.82	3.22	7062	920	14	0	12	18	0	logfile
✔	8R8T	19009	2024-06-24	2023-11-29	2.9	2.36	2.72	2.8	0.002	0.53	0.0	0.04	15.73	0.00	2.207	5.29	0.00	2.6	97.4	0.0	1.06	0.60	0.83	3.21	2.8	0.003	0.59	0.0	0.04	16.12	0.00	2.261	7.56	2.26	2.4	97.6	0.0	1.88	1.20	0.59	0.83	2.25	3256	418	2	0	1	0	0	logfile
✘	8X91	38159	2024-06-30	2023-11-29	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22269	2691	11	0	29	0	0	logfile
✘	8X93	38160	2024-06-30	2023-11-29	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21976	2659	10	0	28	0	0	logfile
✔	8V4F	42970	2024-06-24	2023-11-29	2.68	2.21	2.74	2.1	0.005	0.99	0.0	0.06	13.78	0.01	2.360	4.27	0.00	4.0	96.0	0.0	-0.42	0.76	0.78	3.91	2.0	0.004	0.61	0.0	0.04	16.37	0.00	2.280	8.22	3.16	5.0	95.0	0.0	-0.28	1.10	0.78	0.79	4.44	3237	412	3	0	0	0	0	logfile
✔	8R8K	19002	2024-06-24	2023-11-29	3.41	3.66	3.37	3.7	0.003	0.49	0.0	0.04	15.09	0.00	2.145	4.83	0.23	2.6	97.4	0.0	-0.18	0.58	0.84	2.55	3.7	0.002	0.47	0.0	0.04	15.58	0.00	2.162	5.46	4.55	4.3	95.7	0.0	-0.22	0.30	0.59	0.85	2.26	4005	515	3	0	0	0	0	logfile
✔	8R8R	19008	2024-06-27	2023-11-29	2.79	3.75	2.74	3.2	0.002	0.50	0.0	0.04	13.00	0.00	2.275	2.10	0.00	3.3	96.7	0.0	-0.27	0.89	0.88	5.08	3.2	0.003	0.55	0.0	0.04	13.96	0.00	2.184	3.38	0.52	3.2	96.8	0.0	0.06	0.32	0.89	0.92	4.66	13089	1683	6	6	3	0	0	logfile
✔	8V3L	42949	2024-06-26	2023-11-28	4.3	3.45	4.78	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	4.2	0.003	0.61	0.0	0.04	13.08	0.00	2.180	12.75	0.00	4.2	95.7	0.1	0.97	1.58	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	8X8Q	38156	2024-06-24	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.002	0.54	0.0	0.04	15.37	0.00	2.221	9.54	0.95	1.0	99.0	0.0	0.68	0.35	0.84	0.87	3.47	4949	622	3	0	1	0	0	logfile
✔	8X8L	38148	2024-06-29	2023-11-27	2.7	2.58	2.91	2.9	0.004	0.60	1.0	0.05	9.65	0.00	2.091	5.91	1.89	2.6	97.4	0.0	2.09	0.57	0.76	3.42	2.6	0.006	0.66	0.0	0.05	15.81	0.01	1.976	8.29	2.94	4.3	95.7	0.0	1.06	1.15	0.60	0.85	3.93	17555	1140	6	0	0	0	8704	logfile
✔	8X82	38133	2024-06-27	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.40	0.0	0.03	16.97	0.00	2.209	5.36	1.45	1.3	98.7	0.0	3.58	0.37	0.62	0.82	2.78	12004	1520	4	0	0	0	0	logfile
✘	8X8N	38150	2024-06-29	2023-11-27	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17358	1133	6	0	2	0	8589	logfile
✔	8V30	42939	2024-06-28	2023-11-25	2.54	3.42	2.59	3.1	0.009	0.94	10.0	0.05	14.96	0.01	1.476	3.02	0.51	3.3	96.7	0.0	-1.20	0.74	0.87	3.73	3.1	0.003	0.57	0.0	0.04	14.24	0.00	2.031	5.76	0.38	2.8	97.2	0.0	1.44	0.25	0.75	0.89	3.69	14910	1890	15	0	15	0	0	logfile
✔	8V2Z	42938	2024-06-28	2023-11-25	2.72	3.50	2.78	3.2	0.005	0.78	0.0	0.05	15.42	0.01	2.186	3.79	0.51	3.1	96.9	0.0	-1.04	0.75	0.88	3.25	3.2	0.002	0.54	0.0	0.04	15.01	0.00	2.130	4.58	0.83	2.7	97.3	0.0	1.45	0.25	0.75	0.88	2.81	14635	1860	10	0	10	0	0	logfile
✔	8X79	38095	2024-06-28	2023-11-23	2.41	1.62	2.61	3.0	0.003	0.56	2.0	0.04	14.62	0.00	2.218	3.41	1.30	1.6	98.4	0.0	-0.03	0.62	0.80	3.50	2.9	0.004	0.58	0.0	0.04	17.18	0.00	2.019	6.44	2.71	2.6	97.4	0.0	1.29	2.53	0.61	0.84	3.70	16148	1055	6	0	1	0	7994	logfile
✔	8V2o	42918	2024-06-28	2023-11-23	2.45	3.28	2.53	3.0	0.004	0.80	0.0	0.05	15.84	0.01	2.253	3.92	0.70	2.8	97.2	0.0	-1.34	0.76	0.89	3.74	3.0	0.004	0.88	1.0	0.05	14.42	0.00	1.672	6.57	0.89	2.8	97.1	0.1	1.07	0.27	0.76	0.89	3.95	14660	1860	10	0	10	0	0	logfile
✔	8R6W	18967	2024-06-28	2023-11-23	3.35	3.41	3.33	2.9	0.005	0.79	0.0	0.04	18.61	0.00	2.217	6.64	9.45	7.9	92.0	0.2	-1.57	0.89	0.81	1.79	3.1	0.003	0.61	0.0	0.04	18.18	0.00	1.082	11.48	3.25	7.6	92.3	0.1	-0.53	1.13	0.90	0.83	1.87	16539	1974	5	40	1	0	0	logfile
✔	8R6U	18963	2024-06-27	2023-11-23	2.98	2.77	3.03	3.0	0.007	0.73	0.0	0.05	17.13	0.01	1.964	4.89	6.46	6.6	93.4	0.0	-1.04	0.74	0.87	3.08	3.0	0.002	0.57	0.0	0.04	17.37	0.00	2.035	6.82	2.39	4.9	95.1	0.0	-0.04	0.91	0.73	0.85	2.34	13408	1566	6	43	1	0	0	logfile
✔	8X7A	38096	2024-06-28	2023-11-23	2.56	3.58	2.64	3.3	0.019	0.99	2.0	0.04	8.42	0.01	2.199	4.74	0.12	2.1	97.9	0.0	-0.63	0.67	0.71	2.35	3.3	0.003	0.62	0.0	0.04	14.06	0.00	2.051	8.51	1.49	2.9	97.1	0.0	1.41	1.44	0.65	0.79	2.77	15628	1044	6	0	1	0	7679	logfile

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