Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RBZ	19040	2024-06-30	2023-12-05	3.7	3.61	3.88	3.2	0.004	0.85	0.0	0.05	13.32	0.01	2.184	2.46	0.25	3.5	96.5	0.0	1.71	0.79	0.69	1.36	3.2	0.003	0.65	0.0	0.04	15.01	0.00	2.032	10.07	1.72	3.9	96.1	0.0	1.66	0.62	0.80	0.70	1.27	74102	10096	23	0	13	0	0	logfile
✔	8XAJ	38200	2024-06-27	2023-12-04	3.29	3.52	4.38	3.4	0.009	1.09	0.0	0.05	16.78	0.01	1.547	16.03	0.00	11.3	88.7	0.0	-1.52	0.68	0.76	2.25	3.4	0.003	0.70	0.0	0.04	17.32	0.01	2.217	12.76	2.18	9.9	90.1	0.0	-0.71	1.13	0.64	0.74	2.01	11668	1410	3	0	7	0	0	logfile
✔	8V85	43023	2024-06-24	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.91	0.0	0.05	14.10	0.00	2.188	40.22	1.16	5.1	94.9	0.0	-1.38	3.71	0.33	0.26	0.83	1539	197	1	0	0	0	0	logfile
✔	8V6U	42999	2024-06-25	2023-12-03	3.0	2.35	—	3.0	0.011	1.67	3.0	0.09	14.26	0.01	1.999	1.24	1.31	4.1	95.8	0.1	0.40	0.83	0.79	4.50	3.0	0.005	0.69	0.0	0.04	16.32	0.00	2.088	4.66	3.57	3.9	96.1	0.0	-0.28	1.07	0.85	0.82	3.25	8211	1090	6	0	1	0	0	logfile
✔	8RB7	19027	2024-06-24	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.56	0.0	0.03	17.84	0.01	2.007	8.72	0.96	2.5	97.5	0.0	2.16	2.08	0.28	0.76	1.47	5848	360	2	0	0	0	2948	logfile
✔	8RB5	19026	2024-06-25	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.002	0.55	0.0	0.03	17.49	0.00	2.233	8.44	1.71	2.4	97.6	0.0	2.04	1.43	0.30	0.80	2.10	8772	540	3	0	0	0	4422	logfile
✔	8RB4	19025	2024-06-28	2023-12-02	3.2	3.79	3.35	3.7	0.014	1.83	0.0	0.10	14.38	0.02	2.509	0.68	0.51	3.4	96.6	0.0	-1.19	0.47	0.73	1.91	3.7	0.004	0.63	0.0	0.04	17.49	0.00	1.923	12.45	2.95	2.5	97.3	0.2	1.21	2.24	0.49	0.79	1.49	14620	900	5	0	0	0	7370	logfile
✔	8V62	42987	2024-06-28	2023-12-01	3.4	2.29	3.50	2.1	0.002	0.56	0.0	0.04	10.43	0.01	2.363	2.06	0.00	0.9	99.1	0.0	0.61	0.75	0.77	3.19	2.1	0.004	0.58	0.0	0.04	14.47	0.00	2.217	5.89	2.36	1.9	98.1	0.0	0.77	0.46	0.76	0.78	2.71	15234	1980	9	0	0	0	0	logfile
✔	8V6N	42997	2024-06-30	2023-12-01	2.59	2.81	2.72	2.9	0.008	1.22	0.0	0.05	16.90	0.01	2.274	3.79	0.00	5.6	94.4	0.0	-6.02	0.59	0.78	3.84	2.9	0.003	0.62	0.0	0.04	17.65	0.00	1.945	7.90	2.39	4.8	95.2	0.0	0.22	1.13	0.66	0.86	3.49	22185	2544	12	0	33	184	0	logfile
✔	8V6L	42995	2024-06-30	2023-12-01	3.68	3.99	3.86	3.9	0.004	0.63	0.0	0.04	16.49	0.00	2.001	8.76	5.12	13.4	86.6	0.0	-1.18	0.68	0.82	2.42	4.0	0.004	0.92	2.0	0.04	18.42	0.01	1.924	12.58	5.59	13.5	86.4	0.1	-1.48	4.77	0.71	0.84	1.40	22387	2612	8	0	27	0	0	logfile
✔	8RAS	19023	2024-06-25	2023-12-01	2.62	2.31	—	1.7	0.003	0.51	0.0	0.04	17.48	0.00	1.980	7.95	0.93	3.1	96.9	0.1	0.61	0.78	0.80	3.20	1.5	0.005	0.63	0.0	0.05	18.06	0.00	1.908	9.19	2.11	3.7	96.2	0.0	0.45	0.44	0.81	0.88	3.68	57315	6830	45	81	4	254	0	logfile
✔	8V6o	42998	2024-06-30	2023-12-01	2.83	3.17	2.98	3.2	0.009	1.36	0.0	0.04	20.28	0.01	2.290	4.32	0.35	5.5	94.5	0.0	-6.54	0.61	0.74	3.73	3.1	0.003	0.61	0.0	0.04	18.46	0.00	2.210	8.54	1.90	4.7	95.3	0.0	0.42	1.11	0.66	0.85	3.02	22683	2560	12	0	43	44	0	logfile
✔	8R9X	19015	2024-06-24	2023-11-30	3.1	3.71	3.14	3.5	0.004	0.65	0.0	0.04	16.48	0.00	2.277	5.12	0.00	4.4	95.6	0.0	-0.47	0.72	0.88	3.81	3.5	0.003	0.63	0.0	0.04	14.72	0.00	2.277	7.41	2.24	4.0	96.0	0.0	-0.06	0.52	0.64	0.85	3.87	3782	461	8	0	15	0	0	logfile
✔	8R9Y	19016	2024-06-25	2023-11-30	3.0	3.63	3.03	3.5	0.003	0.59	0.0	0.04	13.51	0.00	2.255	6.05	0.00	5.1	94.9	0.0	0.13	0.84	0.83	3.66	3.4	0.005	0.66	0.0	0.05	15.77	0.00	2.202	9.38	2.87	5.9	94.1	0.0	0.06	2.02	0.86	0.86	3.74	7446	972	7	0	3	0	0	logfile
✔	8V5K	42983	2024-06-30	2023-11-30	2.6	2.12	2.76	1.9	0.007	0.75	0.0	0.05	11.79	0.01	2.217	3.64	0.00	1.2	98.8	0.0	0.72	0.79	0.79	4.83	1.9	0.003	0.61	0.0	0.04	15.17	0.00	2.115	6.80	1.84	1.5	98.5	0.0	1.43	0.41	0.80	0.82	3.64	15336	1980	12	0	3	0	0	logfile
✔	8V5A	42981	2024-06-28	2023-11-30	3.0	2.17	3.05	2.0	0.009	1.05	0.0	0.06	13.03	0.01	2.106	6.89	0.00	3.7	96.3	0.0	-0.64	0.78	0.74	3.21	2.0	0.004	0.68	0.0	0.04	16.02	0.00	2.231	9.55	1.70	2.1	97.9	0.0	0.19	0.95	0.78	0.80	2.53	13056	1701	6	0	0	0	0	logfile
✔	8R9Z	19017	2024-06-25	2023-11-30	2.9	3.45	2.86	3.3	0.003	0.57	0.0	0.04	13.35	0.00	2.272	5.23	0.00	5.6	94.4	0.0	0.16	0.88	0.87	4.35	3.3	0.003	0.64	0.0	0.04	15.28	0.00	2.217	9.38	2.40	5.2	94.8	0.0	0.29	1.09	0.87	0.86	3.94	7441	972	7	0	3	0	0	logfile
✔	8R8T	19009	2024-06-24	2023-11-29	2.9	2.36	2.72	2.8	0.002	0.53	0.0	0.04	15.73	0.00	2.207	5.29	0.00	2.6	97.4	0.0	1.06	0.60	0.83	3.21	2.8	0.003	0.59	0.0	0.04	16.12	0.00	2.261	7.56	2.26	2.4	97.6	0.0	1.88	1.20	0.59	0.83	2.25	3256	418	2	0	1	0	0	logfile
✘	8X90	38158	2024-06-30	2023-11-29	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22122	2665	10	0	29	0	0	logfile
✔	8R8D	18999	2024-06-25	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.005	0.73	0.0	0.05	15.12	0.01	2.151	9.07	3.03	5.1	94.9	0.0	0.15	0.31	0.68	0.82	3.22	7062	920	14	0	12	18	0	logfile

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