Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCS	38253	2024-06-24	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.004	0.55	0.0	0.04	16.47	0.00	2.262	4.36	1.17	2.2	97.8	0.0	1.28	0.88	0.50	0.93	5.61	3360	418	2	0	3	20	0	logfile
✔	8XCX	38258	2024-06-24	2023-12-10	2.83	3.04	1.04	3.0	0.008	0.84	0.0	0.05	16.53	0.01	2.405	6.53	2.96	2.9	97.1	0.0	1.08	0.44	0.88	4.21	3.0	0.003	0.49	0.0	0.04	16.75	0.00	2.260	6.37	1.18	2.7	97.3	0.0	1.68	1.13	0.41	0.89	3.60	3329	416	2	0	2	25	0	logfile
✔	8XD5	38266	2024-06-24	2023-12-10	2.75	2.93	1.08	2.9	0.005	0.73	0.0	0.05	16.88	0.00	2.447	6.29	3.80	3.4	96.6	0.0	0.89	0.49	0.90	5.03	2.8	0.003	0.50	0.0	0.04	16.49	0.00	2.242	5.09	0.88	1.7	98.3	0.0	1.68	1.00	0.48	0.93	4.85	3378	419	2	0	2	31	0	logfile
✔	8XCV	38256	2024-06-24	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.99	0.00	2.314	5.62	0.29	1.9	98.1	0.0	2.11	0.38	0.48	0.91	4.34	3310	415	2	0	1	7	0	logfile
✔	8VA1	43083	2024-06-29	2023-12-10	3.4	2.40	3.58	2.1	0.010	0.67	0.0	0.05	16.59	0.00	2.111	12.42	0.49	5.5	94.5	0.0	-0.47	0.76	0.76	2.31	2.1	0.003	0.61	0.0	0.04	17.10	0.00	2.103	11.93	3.53	5.4	94.6	0.0	-0.19	0.35	0.76	0.76	2.07	18726	2230	8	0	4	0	0	logfile
✔	8XD0	38261	2024-06-24	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.004	0.54	0.0	0.04	17.71	0.00	2.198	5.71	2.35	2.9	96.9	0.2	1.84	0.36	0.46	0.91	3.35	3357	417	2	0	2	14	0	logfile
✔	8XCN	38248	2024-06-25	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.12	0.0	0.06	17.43	0.00	1.605	17.13	3.16	4.2	95.8	0.0	0.23	1.17	0.74	0.82	2.30	8601	1089	5	0	6	0	0	logfile
✔	8XCM	38247	2024-06-25	2023-12-09	3.08	3.84	3.13	3.7	0.030	1.33	0.0	0.46	17.72	0.01	2.118	18.72	0.68	4.8	95.2	0.0	-0.04	0.75	0.83	2.38	3.7	0.004	1.07	0.0	0.06	17.58	0.00	1.788	14.33	3.61	4.6	95.4	0.0	0.20	0.48	0.75	0.83	2.21	8605	1089	5	0	6	0	0	logfile
✔	8XCi	38244	2024-06-25	2023-12-09	3.57	3.94	3.60	3.9	0.017	2.34	11.0	0.11	19.30	0.01	1.529	43.22	14.39	14.1	82.6	3.3	-3.74	0.52	0.82	0.99	3.9	0.003	0.74	0.0	0.04	17.94	0.00	2.153	15.30	5.86	7.3	92.3	0.4	-1.90	0.46	0.50	0.74	1.86	8842	1143	3	0	0	0	0	logfile
✔	8XCJ	38245	2024-06-30	2023-12-09	2.98	3.11	2.98	3.1	0.004	0.69	6.0	0.05	18.49	0.00	2.138	9.20	6.95	3.3	96.1	0.6	-0.54	0.72	0.87	3.86	3.1	0.007	0.67	0.0	0.05	18.36	0.01	2.130	9.62	5.02	4.5	95.1	0.4	-0.60	0.22	0.76	0.89	4.07	19809	2526	6	0	0	0	0	logfile
✔	8XCK	38246	2024-06-26	2023-12-09	2.75	2.91	2.75	2.9	0.016	1.66	4.0	0.10	18.70	0.01	2.194	9.21	5.40	11.4	88.1	0.5	-1.67	0.79	0.86	3.52	2.9	0.004	0.73	0.0	0.05	18.74	0.01	2.181	9.86	5.40	10.5	89.4	0.1	-1.49	0.33	0.76	0.83	3.49	10671	1395	6	0	0	0	0	logfile
✔	8RDU	19075	2024-06-26	2023-12-08	2.3	2.53	—	2.6	0.006	0.89	0.0	0.06	19.92	0.01	1.739	3.45	0.77	2.7	97.3	0.0	-1.13	0.69	0.77	4.20	2.6	0.003	0.61	0.0	0.04	21.25	0.00	1.868	8.65	1.86	2.0	98.0	0.0	1.20	0.86	0.68	0.80	3.24	61430	6103	71	526	33	862	0	logfile
✘	8XBX	38232	2024-06-24	2023-12-07	4.36	6.89	4.04	7.5	0.005	0.90	0.0	0.04	18.16	0.01	2.260	13.70	0.00	0.9	99.1	0.0	-0.16	0.65	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5873	663	5	38	0	0	0	logfile
✔	8XBS	38227	2024-06-26	2023-12-07	2.21	2.40	2.28	2.5	0.006	1.17	24.0	0.08	22.13	0.01	2.189	8.39	3.17	3.6	96.4	0.0	1.61	0.70	0.86	4.39	2.5	0.003	0.62	0.0	0.04	17.98	0.00	2.316	5.38	2.55	3.8	96.2	0.0	1.52	1.11	0.70	0.87	4.03	10658	1282	8	0	22	0	0	logfile
✔	8XBW	38231	2024-06-24	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.006	1.32	0.0	0.06	23.79	0.01	2.204	30.68	2.48	2.5	97.5	0.0	-2.45	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile
✔	8XC1	38236	2024-06-27	2023-12-07	2.21	2.60	2.41	2.6	0.004	1.19	21.0	0.09	24.88	0.01	1.869	10.58	2.05	3.9	96.1	0.0	1.19	0.63	0.81	3.49	2.6	0.003	0.60	0.0	0.04	21.00	0.00	2.240	6.52	2.90	3.4	96.6	0.0	1.22	1.58	0.61	0.80	2.99	13542	1320	12	120	22	0	0	logfile
✔	8XBi	38219	2024-06-24	2023-12-06	3.06	2.87	3.01	3.0	0.013	1.26	0.0	0.07	13.63	0.01	2.221	7.35	0.00	1.7	98.3	0.0	1.92	0.37	0.67	0.71	3.0	0.002	0.51	0.0	0.04	16.58	0.00	2.210	9.13	2.18	2.0	98.0	0.0	2.23	0.43	0.48	0.72	0.93	2467	298	2	0	1	0	0	logfile
✔	8XBH	38218	2024-06-26	2023-12-06	2.83	2.95	2.88	3.0	0.004	0.70	0.0	0.04	13.23	0.00	2.151	10.57	0.00	3.8	96.1	0.1	0.30	0.49	0.70	2.33	3.1	0.003	0.68	0.0	0.04	16.57	0.00	2.174	11.87	2.36	3.7	96.2	0.1	0.38	0.51	0.52	0.74	1.75	8947	1137	6	0	1	0	0	logfile
✔	8XBE	38215	2024-06-26	2023-12-06	3.4	3.29	3.29	3.4	0.004	0.72	0.0	0.04	13.78	0.01	2.118	9.23	0.00	5.1	94.8	0.1	-0.41	0.45	0.71	2.50	3.4	0.003	0.62	0.0	0.04	16.12	0.00	2.143	10.53	3.29	3.8	96.1	0.1	0.07	0.44	0.50	0.75	1.94	8937	1137	6	0	1	0	0	logfile
✔	8XBG	38217	2024-06-24	2023-12-06	3.43	3.45	3.44	3.5	0.016	1.58	0.0	0.09	15.25	0.01	2.198	8.55	0.36	5.1	94.9	0.0	0.00	0.37	0.69	1.32	3.5	0.003	0.52	0.0	0.04	16.11	0.00	2.231	10.14	2.91	2.0	98.0	0.0	2.48	1.19	0.41	0.68	0.31	2461	298	2	0	1	0	0	logfile

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