Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RFG	19119	2024-06-30	2023-12-12	3.35	3.85	3.48	3.7	0.004	0.76	0.0	0.04	19.69	0.00	2.000	10.70	0.14	8.9	90.3	0.8	-1.57	0.82	0.82	2.28	3.7	0.003	0.64	0.0	0.04	15.08	0.00	2.108	10.24	1.09	7.7	91.6	0.7	-0.70	0.41	0.79	0.81	1.85	21879	2765	5	0	27	2	0	logfile
✘	8RF0	19114	2024-06-30	2023-12-12	3.4	4.01	3.68	3.9	0.004	0.73	1.0	0.05	16.92	0.01	2.171	10.52	0.45	8.8	90.3	0.9	-1.04	0.70	0.59	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21922	2780	4	0	19	0	0	logfile
✔	8XEJ	38291	2024-06-25	2023-12-12	3.66	3.95	3.64	3.9	0.004	0.84	0.0	0.04	13.95	0.00	2.222	7.98	3.64	4.9	95.1	0.0	0.15	0.66	0.77	1.42	3.9	0.003	0.71	0.0	0.04	16.16	0.00	2.182	7.42	4.81	4.1	95.9	0.0	1.07	2.84	0.70	0.81	1.85	7153	916	5	0	1	0	0	logfile
✔	8RFH	19121	2024-06-27	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.003	0.77	0.0	0.05	16.04	0.00	2.201	17.23	2.13	3.3	96.7	0.0	0.36	1.00	0.82	0.76	0.99	11802	1460	4	0	2	0	0	logfile
✔	8VAT	43102	2024-06-29	2023-12-11	3.2	3.36	3.19	3.4	0.005	0.72	0.0	0.04	16.28	0.00	1.709	12.31	0.00	4.6	95.3	0.1	0.21	0.70	0.78	1.80	3.4	0.003	0.60	0.0	0.04	17.66	0.00	1.409	12.39	1.85	3.6	96.3	0.1	0.66	1.30	0.70	0.80	1.74	19423	2393	13	31	13	0	0	logfile
✔	8XE9	38283	2024-06-24	2023-12-11	3.3	4.04	3.24	3.8	0.003	0.56	0.0	0.04	13.28	0.01	2.265	6.71	0.00	7.5	92.5	0.0	-2.10	0.64	0.81	2.76	3.8	0.003	0.69	0.0	0.04	15.79	0.00	2.244	9.83	3.12	8.0	92.0	0.0	-1.34	0.94	0.63	0.88	2.35	3266	420	3	0	0	0	0	logfile
✔	8XCZ	38260	2024-06-24	2023-12-10	2.83	3.03	1.04	3.0	0.007	0.74	0.0	0.05	17.16	0.01	2.428	5.92	3.85	3.6	96.4	0.0	1.41	0.43	0.88	4.78	3.0	0.004	0.51	0.0	0.04	17.29	0.00	2.214	5.16	1.78	2.7	97.3	0.0	1.62	0.35	0.43	0.91	3.87	3324	416	2	0	2	17	0	logfile
✔	8XD1	38262	2024-06-24	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.002	0.52	0.0	0.04	17.14	0.00	2.145	6.23	0.88	2.9	97.1	0.0	1.45	0.47	0.42	0.88	3.19	3307	416	2	0	1	9	0	logfile
✔	8XD4	38265	2024-06-24	2023-12-10	2.87	3.04	—	3.0	0.007	0.82	0.0	0.05	17.18	0.00	2.325	5.57	3.81	3.4	96.6	0.0	1.29	0.44	0.86	4.02	3.0	0.002	0.50	0.0	0.04	17.47	0.00	2.319	6.33	0.59	2.6	97.1	0.2	2.03	1.63	0.43	0.89	3.89	3342	418	2	0	2	11	0	logfile
✔	8XCX	38258	2024-06-24	2023-12-10	2.83	3.04	1.04	3.0	0.008	0.84	0.0	0.05	16.53	0.01	2.405	6.53	2.96	2.9	97.1	0.0	1.08	0.44	0.88	4.21	3.0	0.003	0.49	0.0	0.04	16.75	0.00	2.260	6.37	1.18	2.7	97.3	0.0	1.68	1.13	0.41	0.89	3.60	3329	416	2	0	2	25	0	logfile
✔	8XCY	38259	2024-06-24	2023-12-10	2.91	3.04	1.04	3.0	0.008	0.83	0.0	0.05	17.01	0.00	2.241	6.53	3.56	3.1	96.9	0.0	0.91	0.43	0.86	3.94	3.0	0.003	0.53	0.0	0.04	16.86	0.00	2.254	5.47	1.19	3.6	96.4	0.0	1.35	0.59	0.44	0.90	4.28	3311	416	2	0	2	8	0	logfile
✔	8XD3	38264	2024-06-24	2023-12-10	2.87	3.06	1.34	3.0	0.007	0.82	0.0	0.05	17.44	0.00	2.325	5.57	3.81	3.4	96.6	0.0	1.29	0.48	0.88	3.57	3.0	0.004	0.55	0.0	0.04	17.41	0.00	2.185	6.48	2.05	2.9	96.9	0.2	1.48	0.44	0.46	0.90	3.34	3342	418	2	0	2	11	0	logfile
✔	8XCT	38254	2024-06-24	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.004	0.54	0.0	0.04	16.84	0.00	2.175	5.27	1.76	3.6	96.1	0.2	1.37	1.56	0.43	0.89	4.05	3358	417	2	0	1	28	0	logfile
✔	8XD2	38263	2024-06-24	2023-12-10	2.64	3.04	—	3.0	0.009	0.88	0.0	0.05	17.62	0.00	2.449	4.72	3.56	3.9	96.1	0.0	0.83	0.45	0.88	4.08	3.0	0.004	0.57	0.0	0.04	17.04	0.00	2.273	5.33	0.89	2.7	97.3	0.0	1.85	0.55	0.43	0.89	3.77	3305	416	2	0	2	9	0	logfile
✔	8XCQ	38251	2024-06-24	2023-12-10	2.6	2.77	—	2.7	0.009	0.92	0.0	0.05	17.87	0.00	2.433	6.08	4.15	4.8	95.2	0.0	0.64	0.48	0.88	4.78	2.7	0.002	0.53	0.0	0.04	17.09	0.00	2.204	5.47	0.30	2.9	97.1	0.0	1.86	1.01	0.50	0.92	4.01	3312	416	2	0	3	6	0	logfile
✔	8VA1	43083	2024-06-29	2023-12-10	3.4	2.40	3.58	2.1	0.010	0.67	0.0	0.05	16.59	0.00	2.111	12.42	0.49	5.5	94.5	0.0	-0.47	0.76	0.76	2.31	2.1	0.003	0.61	0.0	0.04	17.10	0.00	2.103	11.93	3.53	5.4	94.6	0.0	-0.19	0.35	0.76	0.76	2.07	18726	2230	8	0	4	0	0	logfile
✔	8XD6	38267	2024-06-24	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.015	1.12	1.0	0.04	16.59	0.01	0.945	8.37	1.46	1.7	98.3	0.0	1.45	0.41	0.48	0.93	4.61	3402	419	2	0	4	44	0	logfile
✔	8XCU	38255	2024-06-24	2023-12-10	2.83	3.05	1.05	3.0	0.009	1.11	0.0	0.06	16.31	0.01	2.476	4.65	5.00	2.2	97.8	0.0	1.25	0.45	0.87	4.12	3.0	0.003	0.54	0.0	0.04	16.45	0.00	2.242	7.50	0.29	3.9	95.9	0.2	1.64	0.62	0.46	0.91	4.05	3370	417	2	0	3	20	0	logfile
✔	8XCV	38256	2024-06-24	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.99	0.00	2.314	5.62	0.29	1.9	98.1	0.0	2.11	0.38	0.48	0.91	4.34	3310	415	2	0	1	7	0	logfile
✔	8XCS	38253	2024-06-24	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.004	0.55	0.0	0.04	16.47	0.00	2.262	4.36	1.17	2.2	97.8	0.0	1.28	0.88	0.50	0.93	5.61	3360	418	2	0	3	20	0	logfile

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