Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VE3	43163	2024-06-24	2023-12-18	3.3	3.47	3.13	3.4	0.005	0.65	0.0	0.05	11.27	0.00	2.204	11.69	0.00	3.7	96.3	0.0	0.45	0.75	0.78	5.02	3.4	0.003	0.63	0.0	0.05	13.36	0.01	2.299	9.22	5.08	3.9	96.1	0.0	0.23	0.69	0.75	0.79	4.18	3210	466	4	0	0	0	0	logfile
✔	8VE5	43165	2024-06-24	2023-12-18	3.4	3.67	3.31	3.8	0.005	0.58	0.0	0.05	11.51	0.01	2.216	7.40	0.00	2.2	97.8	0.0	0.60	0.72	0.80	4.97	3.8	0.002	0.52	0.0	0.05	14.08	0.00	2.235	5.70	2.97	2.2	97.8	0.0	0.47	0.32	0.71	0.80	4.27	3382	467	5	0	1	0	0	logfile
✔	8RHZ	19179	2024-06-28	2023-12-17	3.37	2.52	3.41	2.2	0.007	0.62	0.0	0.04	12.49	0.00	1.789	4.92	0.12	6.5	93.5	0.0	-1.29	0.76	0.78	2.52	2.2	0.003	0.53	0.0	0.04	13.27	0.00	2.047	3.10	1.31	3.2	96.8	0.0	3.18	0.90	0.76	0.80	2.12	15223	2439	6	0	6	0	0	logfile
✔	8XGR	38330	2024-06-26	2023-12-15	3.2	3.95	3.21	3.7	0.003	0.56	0.0	0.04	13.83	0.00	2.126	7.33	0.22	3.7	96.3	0.0	-2.13	0.69	0.74	2.11	3.8	0.004	0.78	0.0	0.05	16.33	0.00	2.167	16.00	4.12	4.6	95.4	0.0	-0.84	3.07	0.68	0.79	1.00	8206	1049	5	0	0	0	0	logfile
✔	8RH0	19164	2024-06-29	2023-12-14	3.44	3.40	3.32	3.4	0.005	0.62	0.0	0.05	14.04	0.01	2.202	6.74	0.00	1.1	98.9	0.0	0.19	0.79	0.85	3.38	3.4	0.005	0.58	0.0	0.04	15.80	0.00	2.140	7.09	2.49	2.8	97.2	0.0	0.18	0.41	0.79	0.86	3.27	19137	2421	9	0	0	0	0	logfile
✔	8RGQ	19146	2024-06-28	2023-12-14	3.0	3.59	—	3.0	0.006	0.85	0.0	1.03	14.91	0.01	2.151	6.59	0.01	3.7	96.3	0.0	0.03	0.93	0.90	3.06	3.0	0.009	1.61	1.0	0.31	16.18	0.00	2.007	13.40	1.27	3.4	96.6	0.0	1.39	2.16	0.93	0.90	2.87	67118	8151	67	0	43	0	0	logfile
✔	8RGT	19148	2024-06-28	2023-12-14	3.1	3.41	—	3.1	0.006	0.87	0.0	1.03	15.62	0.01	2.192	6.14	0.00	3.8	96.2	0.0	-0.03	0.92	0.90	2.87	3.1	0.008	1.57	0.0	0.31	16.30	0.00	2.067	10.75	1.52	3.4	96.6	0.0	1.37	0.32	0.92	0.90	2.68	67123	8151	67	0	43	0	0	logfile
✔	8RGR	19147	2024-06-28	2023-12-14	2.9	3.44	—	2.9	0.006	0.75	0.0	1.02	14.30	0.01	2.134	5.33	1.62	3.5	96.5	0.0	0.22	0.93	0.91	3.84	2.9	0.008	1.59	1.0	0.31	15.46	0.00	1.992	11.52	1.41	3.3	96.7	0.0	1.44	0.36	0.93	0.90	3.22	68141	8236	69	0	49	0	0	logfile
✔	8VDE	43147	2024-06-29	2023-12-14	3.4	3.79	3.62	3.7	0.006	0.86	0.0	0.05	13.48	0.01	2.235	1.81	0.09	3.4	96.6	0.0	-1.45	0.59	0.79	2.60	3.7	0.005	0.66	0.0	0.04	16.66	0.00	2.122	9.67	2.20	3.5	96.5	0.0	0.70	0.89	0.61	0.85	1.94	70177	8643	27	0	0	0	0	logfile
✔	8RGP	19145	2024-06-28	2023-12-14	3.0	3.32	—	2.9	0.007	0.81	0.0	1.02	14.65	0.01	1.897	6.02	2.76	6.0	94.0	0.0	-0.42	0.93	0.91	3.47	3.0	0.008	1.59	0.0	0.31	15.92	0.00	1.984	11.09	2.32	5.7	94.3	0.0	0.78	0.37	0.93	0.90	3.02	67868	8222	69	0	45	0	0	logfile
✔	8RH2	19166	2024-06-29	2023-12-14	3.12	3.16	3.04	3.2	0.005	0.58	0.0	0.05	14.37	0.01	2.205	7.05	0.05	1.9	98.1	0.0	0.07	0.78	0.86	3.67	3.2	0.004	0.50	0.0	0.04	15.61	0.00	2.118	7.29	2.29	1.8	98.2	0.0	0.35	0.30	0.81	0.88	3.38	19152	2421	9	0	0	0	0	logfile
✔	8RH1	19165	2024-06-29	2023-12-14	3.45	3.21	3.42	3.4	0.008	0.85	0.0	0.06	13.62	0.01	2.230	10.64	0.00	2.4	97.6	0.0	-0.79	0.76	0.79	2.71	3.3	0.004	0.59	0.0	0.04	15.61	0.00	2.130	9.74	2.68	2.2	97.8	0.0	-0.04	1.42	0.81	0.83	2.49	19560	2442	9	0	0	0	0	logfile
✔	8RGZ	19163	2024-06-29	2023-12-14	3.27	3.29	3.12	3.3	0.011	1.10	0.0	0.07	13.47	0.01	2.198	12.25	0.19	2.6	97.4	0.0	-0.38	0.72	0.82	3.39	3.3	0.004	0.60	0.0	0.04	15.57	0.00	2.127	11.03	2.49	2.9	97.1	0.0	-0.24	0.47	0.75	0.83	3.04	19545	2442	9	0	0	0	0	logfile
✔	8VC1	43129	2024-06-27	2023-12-13	2.85	3.23	2.92	3.2	0.012	1.46	0.0	0.06	17.03	0.01	2.196	4.03	0.30	2.1	97.9	0.0	-1.02	0.59	0.82	3.63	3.2	0.003	0.51	0.0	0.03	16.24	0.00	2.232	8.98	1.34	1.4	98.6	0.0	4.06	0.45	0.56	0.80	2.26	13128	1564	8	0	32	0	0	logfile
✔	8RGG	19132	2024-06-25	2023-12-13	4.0	4.37	3.92	4.0	0.012	1.85	5.0	0.10	13.18	0.01	2.531	0.14	0.00	4.1	95.9	0.0	-0.27	0.70	0.46	—	4.0	0.003	0.75	0.0	0.04	15.49	0.00	2.134	16.50	3.42	7.0	93.0	0.0	0.34	2.93	0.75	0.59	—	7679	1156	7	0	0	0	0	logfile
✔	8RGH	19133	2024-06-26	2023-12-13	3.9	4.34	3.89	4.0	0.012	1.88	4.0	0.10	14.04	0.02	2.504	0.53	0.00	4.7	95.3	0.0	-1.05	0.82	0.66	1.27	4.0	0.003	0.67	0.0	0.04	15.90	0.00	2.129	12.82	1.05	3.4	96.6	0.0	0.82	1.22	0.84	0.69	1.02	9682	1287	6	0	0	0	0	logfile
✔	8VC2	43130	2024-06-27	2023-12-13	3.98	4.39	3.99	4.4	0.006	0.84	0.0	0.04	14.09	0.01	2.353	2.91	0.31	2.4	97.6	0.0	-0.98	0.57	0.71	1.08	4.4	0.004	0.96	1.0	0.04	16.35	0.01	2.236	10.63	4.64	2.7	97.3	0.0	1.52	2.23	0.56	0.73	1.08	11796	1516	8	0	4	0	0	logfile
✘	8RF0	19114	2024-06-30	2023-12-12	3.4	4.01	3.68	3.9	0.004	0.73	1.0	0.05	16.92	0.01	2.171	10.52	0.45	8.8	90.3	0.9	-1.04	0.70	0.59	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21922	2780	4	0	19	0	0	logfile
✔	8REV	19109	2024-06-25	2023-12-12	3.1	3.56	3.13	3.4	0.008	1.09	0.0	0.08	22.25	0.04	2.065	16.19	5.70	6.1	93.7	0.2	-1.33	0.75	0.79	1.68	3.4	0.005	0.75	0.0	0.04	20.52	0.00	2.016	14.82	3.17	5.7	94.2	0.1	-0.24	1.05	0.77	0.81	1.38	7797	898	5	25	3	0	0	logfile
✔	8RF9	19116	2024-06-30	2023-12-12	3.28	3.88	3.54	3.8	0.003	0.70	0.0	0.04	14.24	0.00	2.070	10.54	0.14	9.5	89.4	1.1	-0.95	0.76	0.84	2.02	3.8	0.003	0.65	0.0	0.04	15.51	0.00	2.015	10.22	0.90	8.9	90.3	0.8	-0.52	1.33	0.73	0.83	1.83	20646	2642	1	0	0	0	0	logfile

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