Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RF9	19116	2024-06-30	2023-12-12	3.28	3.88	3.54	3.8	0.003	0.70	0.0	0.04	14.24	0.00	2.070	10.54	0.14	9.5	89.4	1.1	-0.95	0.76	0.84	2.02	3.8	0.003	0.65	0.0	0.04	15.51	0.00	2.015	10.22	0.90	8.9	90.3	0.8	-0.52	1.33	0.73	0.83	1.83	20646	2642	1	0	0	0	0	logfile
✔	8RFE	19118	2024-06-30	2023-12-12	3.8	4.63	3.96	4.1	0.003	0.61	0.0	0.04	16.60	0.00	2.148	11.81	0.14	7.6	91.6	0.8	-0.82	0.84	0.80	0.80	4.1	0.003	0.70	0.0	0.04	14.44	0.00	2.035	16.23	0.68	8.7	90.6	0.7	-0.54	0.40	0.85	0.84	0.97	21776	2765	3	0	12	0	0	logfile
✔	8XEJ	38291	2024-06-25	2023-12-12	3.66	3.95	3.64	3.9	0.004	0.84	0.0	0.04	13.95	0.00	2.222	7.98	3.64	4.9	95.1	0.0	0.15	0.66	0.77	1.42	3.9	0.003	0.71	0.0	0.04	16.16	0.00	2.182	7.42	4.81	4.1	95.9	0.0	1.07	2.84	0.70	0.81	1.85	7153	916	5	0	1	0	0	logfile
✔	8RFG	19119	2024-06-30	2023-12-12	3.35	3.85	3.48	3.7	0.004	0.76	0.0	0.04	19.69	0.00	2.000	10.70	0.14	8.9	90.3	0.8	-1.57	0.82	0.82	2.28	3.7	0.003	0.64	0.0	0.04	15.08	0.00	2.108	10.24	1.09	7.7	91.6	0.7	-0.70	0.41	0.79	0.81	1.85	21879	2765	5	0	27	2	0	logfile
✔	8REV	19109	2024-06-25	2023-12-12	3.1	3.56	3.13	3.4	0.008	1.09	0.0	0.08	22.25	0.04	2.065	16.19	5.70	6.1	93.7	0.2	-1.33	0.75	0.79	1.68	3.4	0.005	0.75	0.0	0.04	20.52	0.00	2.016	14.82	3.17	5.7	94.2	0.1	-0.24	1.05	0.77	0.81	1.38	7797	898	5	25	3	0	0	logfile
✘	8RF0	19114	2024-06-30	2023-12-12	3.4	4.01	3.68	3.9	0.004	0.73	1.0	0.05	16.92	0.01	2.171	10.52	0.45	8.8	90.3	0.9	-1.04	0.70	0.59	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21922	2780	4	0	19	0	0	logfile
✔	8RFH	19121	2024-06-27	2023-12-12	3.9	4.24	3.78	4.1	0.003	0.76	1.0	0.05	15.84	0.00	2.201	17.02	1.44	2.7	97.2	0.1	0.66	0.81	0.74	0.73	4.0	0.003	0.77	0.0	0.05	16.04	0.00	2.201	17.23	2.13	3.3	96.7	0.0	0.36	1.00	0.82	0.76	0.99	11802	1460	4	0	2	0	0	logfile
✔	8XE9	38283	2024-06-24	2023-12-11	3.3	4.04	3.24	3.8	0.003	0.56	0.0	0.04	13.28	0.01	2.265	6.71	0.00	7.5	92.5	0.0	-2.10	0.64	0.81	2.76	3.8	0.003	0.69	0.0	0.04	15.79	0.00	2.244	9.83	3.12	8.0	92.0	0.0	-1.34	0.94	0.63	0.88	2.35	3266	420	3	0	0	0	0	logfile
✔	8VAT	43102	2024-06-29	2023-12-11	3.2	3.36	3.19	3.4	0.005	0.72	0.0	0.04	16.28	0.00	1.709	12.31	0.00	4.6	95.3	0.1	0.21	0.70	0.78	1.80	3.4	0.003	0.60	0.0	0.04	17.66	0.00	1.409	12.39	1.85	3.6	96.3	0.1	0.66	1.30	0.70	0.80	1.74	19423	2393	13	31	13	0	0	logfile
✔	8XCT	38254	2024-06-24	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.004	0.54	0.0	0.04	16.84	0.00	2.175	5.27	1.76	3.6	96.1	0.2	1.37	1.56	0.43	0.89	4.05	3358	417	2	0	1	28	0	logfile
✔	8XD1	38262	2024-06-24	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.002	0.52	0.0	0.04	17.14	0.00	2.145	6.23	0.88	2.9	97.1	0.0	1.45	0.47	0.42	0.88	3.19	3307	416	2	0	1	9	0	logfile
✔	8XCS	38253	2024-06-24	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.004	0.55	0.0	0.04	16.47	0.00	2.262	4.36	1.17	2.2	97.8	0.0	1.28	0.88	0.50	0.93	5.61	3360	418	2	0	3	20	0	logfile
✔	8XD6	38267	2024-06-24	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.015	1.12	1.0	0.04	16.59	0.01	0.945	8.37	1.46	1.7	98.3	0.0	1.45	0.41	0.48	0.93	4.61	3402	419	2	0	4	44	0	logfile
✔	8XCV	38256	2024-06-24	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.99	0.00	2.314	5.62	0.29	1.9	98.1	0.0	2.11	0.38	0.48	0.91	4.34	3310	415	2	0	1	7	0	logfile
✔	8XD0	38261	2024-06-24	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.004	0.54	0.0	0.04	17.71	0.00	2.198	5.71	2.35	2.9	96.9	0.2	1.84	0.36	0.46	0.91	3.35	3357	417	2	0	2	14	0	logfile
✔	8XCW	38257	2024-06-24	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.004	0.51	0.0	0.04	16.81	0.00	2.215	6.94	2.95	2.4	97.6	0.0	2.00	0.42	0.49	0.92	3.47	3347	416	2	0	2	17	0	logfile
✔	8XCo	38249	2024-06-24	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.004	0.52	0.0	0.04	17.32	0.00	2.279	5.13	0.59	2.2	97.8	0.0	1.76	0.57	0.50	0.93	4.53	3335	416	2	0	1	14	0	logfile
✔	8XCN	38248	2024-06-25	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.12	0.0	0.06	17.43	0.00	1.605	17.13	3.16	4.2	95.8	0.0	0.23	1.17	0.74	0.82	2.30	8601	1089	5	0	6	0	0	logfile
✔	8XCi	38244	2024-06-25	2023-12-09	3.57	3.94	3.60	3.9	0.017	2.34	11.0	0.11	19.30	0.01	1.529	43.22	14.39	14.1	82.6	3.3	-3.74	0.52	0.82	0.99	3.9	0.003	0.74	0.0	0.04	17.94	0.00	2.153	15.30	5.86	7.3	92.3	0.4	-1.90	0.46	0.50	0.74	1.86	8842	1143	3	0	0	0	0	logfile
✔	8XCJ	38245	2024-06-30	2023-12-09	2.98	3.11	2.98	3.1	0.004	0.69	6.0	0.05	18.49	0.00	2.138	9.20	6.95	3.3	96.1	0.6	-0.54	0.72	0.87	3.86	3.1	0.007	0.67	0.0	0.05	18.36	0.01	2.130	9.62	5.02	4.5	95.1	0.4	-0.60	0.22	0.76	0.89	4.07	19809	2526	6	0	0	0	0	logfile

• ← previous
• Page 10 of 440
• next →