Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XMo	38484	2024-06-27	2023-12-27	3.39	3.66	3.42	3.6	0.015	1.57	13.0	0.09	18.70	0.01	2.039	20.52	2.81	4.9	95.0	0.1	-0.94	0.65	0.80	1.74	3.6	0.003	0.63	0.0	0.04	17.49	0.00	2.139	11.77	2.39	3.5	96.5	0.0	0.17	1.22	0.63	0.81	1.75	13323	1578	7	0	22	0	0	logfile
✔	8VGT	43224	2024-06-24	2023-12-27	2.9	3.22	2.90	3.2	0.011	1.30	1.0	0.07	10.51	0.01	2.374	2.03	0.70	3.9	95.6	0.5	-0.41	0.68	0.77	5.20	3.2	0.003	0.61	0.0	0.05	14.07	0.00	2.233	4.62	2.56	2.9	97.1	0.0	-0.18	1.15	0.62	0.77	4.52	4714	629	4	0	5	0	0	logfile
✔	8XMN	38483	2024-06-27	2023-12-27	3.37	3.70	3.48	3.6	0.012	1.29	4.0	0.08	17.91	0.01	2.202	20.51	2.34	6.6	93.2	0.2	-1.12	0.57	0.80	1.93	3.6	0.003	0.69	0.0	0.04	17.77	0.00	2.212	13.00	2.34	4.8	95.2	0.0	-0.02	0.55	0.58	0.82	1.45	13110	1569	7	0	18	0	0	logfile
✔	8XMM	38482	2024-06-27	2023-12-27	2.89	3.35	2.94	3.2	0.010	1.16	0.0	0.06	21.13	0.01	2.077	12.01	0.34	3.7	96.3	0.0	0.13	0.64	0.83	2.63	3.2	0.005	0.63	0.0	0.04	18.61	0.00	2.289	7.82	2.03	4.2	95.8	0.0	1.03	0.44	0.56	0.80	2.45	11389	1318	6	0	28	0	0	logfile
✔	8XLN	38454	2024-06-27	2023-12-26	3.78	3.92	3.75	3.8	0.004	0.65	0.0	0.04	17.14	0.00	2.162	7.15	0.00	6.2	93.8	0.0	0.46	0.78	0.81	1.72	3.8	0.002	0.58	0.0	0.04	16.39	0.00	2.165	7.23	2.02	6.0	94.0	0.0	0.51	1.07	0.79	0.82	1.15	6593	789	8	0	15	0	0	logfile
✘	8XKL	38419	2024-06-28	2023-12-23	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15357	1280	16	0	176	0	0	logfile
✔	8VFV	43190	2024-06-30	2023-12-22	3.3	3.51	3.33	3.5	0.007	1.20	1.0	0.06	13.91	0.01	1.702	2.86	0.27	2.3	97.7	0.0	1.14	0.69	0.84	3.76	3.5	0.004	0.75	0.0	0.04	13.98	0.00	1.546	10.62	2.71	3.3	96.7	0.1	0.38	0.49	0.71	0.86	3.28	21240	2607	29	0	72	0	0	logfile
✔	8XJL	38400	2024-06-25	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.003	0.53	0.0	0.04	14.80	0.00	2.174	6.91	1.05	1.7	98.3	0.0	1.83	0.59	0.68	0.80	3.27	8846	1140	6	0	1	0	0	logfile
✔	8XJM	38401	2024-06-25	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.55	0.0	0.04	14.72	0.00	2.198	7.31	2.43	1.9	98.1	0.0	2.00	1.19	0.68	0.83	4.09	8849	1140	6	0	1	0	0	logfile
✔	8XJo	38403	2024-06-26	2023-12-21	3.11	3.33	3.18	3.3	0.006	0.62	0.0	0.15	8.84	0.00	2.213	5.30	1.06	1.2	98.8	0.0	1.07	0.65	0.80	3.29	3.3	0.004	0.59	0.0	0.04	14.07	0.00	2.108	7.62	3.70	1.7	98.3	0.0	1.36	0.60	0.65	0.81	2.63	8950	1164	6	0	1	0	0	logfile
✔	8XJ4	38393	2024-06-24	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.69	0.0	0.04	17.63	0.01	2.278	5.47	1.26	3.8	96.2	0.0	1.68	1.19	0.69	0.79	2.39	5820	693	6	0	12	0	0	logfile
✔	8XJ8	38396	2024-06-28	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.002	0.58	0.0	0.04	17.71	0.00	2.051	6.15	1.77	3.6	96.0	0.4	0.07	2.12	0.75	0.86	2.87	15904	1957	10	6	6	0	0	logfile
✔	8XJ7	38395	2024-06-29	2023-12-20	2.74	3.10	2.92	3.0	0.005	0.73	1.0	0.04	17.62	0.00	2.027	8.63	1.55	5.1	94.6	0.3	-0.64	0.74	0.84	3.38	3.0	0.005	0.87	2.0	0.05	16.89	0.01	1.835	10.84	2.62	5.8	93.9	0.3	-0.71	0.32	0.75	0.85	3.48	19595	2420	13	6	9	0	0	logfile
✔	8VE4	43164	2024-06-24	2023-12-18	3.3	3.35	3.10	3.3	0.003	0.56	0.0	0.05	10.45	0.01	2.302	7.13	0.00	1.3	98.7	0.0	1.77	0.74	0.75	4.32	3.3	0.003	0.62	0.0	0.05	12.96	0.01	2.327	9.17	3.81	2.2	97.8	0.0	0.26	0.42	0.75	0.78	3.76	3148	465	4	0	0	0	0	logfile
✔	8Ri9	19184	2024-06-24	2023-12-18	3.3	3.49	2.64	3.5	0.011	1.88	0.0	0.08	12.25	0.01	2.613	3.55	2.38	3.6	96.4	0.0	-1.61	0.44	0.71	6.15	3.7	0.002	0.48	0.0	0.05	11.26	0.00	2.207	4.50	1.90	11.3	88.7	0.0	-1.22	0.62	0.29	0.63	5.87	4230	295	5	0	0	0	2180	logfile
✔	8VE2	43162	2024-06-24	2023-12-18	3.3	3.54	3.12	3.6	0.002	0.57	0.0	0.05	10.51	0.00	2.295	5.05	0.00	1.1	98.9	0.0	1.60	0.75	0.77	4.10	3.5	0.003	0.59	0.0	0.05	13.04	0.01	2.225	9.06	6.42	2.8	97.2	0.0	0.05	0.71	0.76	0.79	3.89	3105	465	4	0	0	0	0	logfile
✔	8VE6	43166	2024-06-24	2023-12-18	4.1	4.24	3.95	4.2	0.004	0.67	0.0	0.05	11.95	0.01	2.230	9.76	0.00	3.7	96.3	0.0	-0.17	0.80	0.81	—	4.2	0.006	0.68	0.0	0.05	11.38	0.01	2.144	10.45	0.00	5.9	94.1	0.0	-0.75	0.70	0.79	0.81	—	3178	465	5	0	1	0	0	logfile
✔	8VE0	43160	2024-06-24	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.002	0.54	0.0	0.05	14.87	0.00	2.195	7.99	1.71	1.5	98.5	0.0	1.32	0.36	0.74	0.81	3.46	3527	466	6	0	2	0	0	logfile
✔	8VE3	43163	2024-06-24	2023-12-18	3.3	3.47	3.13	3.4	0.005	0.65	0.0	0.05	11.27	0.00	2.204	11.69	0.00	3.7	96.3	0.0	0.45	0.75	0.78	5.02	3.4	0.003	0.63	0.0	0.05	13.36	0.01	2.299	9.22	5.08	3.9	96.1	0.0	0.23	0.69	0.75	0.79	4.18	3210	466	4	0	0	0	0	logfile
✔	8VE7	43167	2024-06-24	2023-12-18	4.0	4.19	3.24	4.1	0.003	0.61	0.0	0.04	11.54	0.00	2.139	11.66	0.00	1.7	98.3	0.0	2.80	0.41	0.79	—	4.1	0.003	0.64	0.0	0.04	14.64	0.00	2.280	10.34	1.69	2.1	97.9	0.0	2.97	1.94	0.42	0.83	—	2264	294	1	0	0	0	0	logfile

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