Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XoP	38537	2024-06-30	2024-01-02	2.8	3.94	2.89	3.5	0.005	0.69	0.0	0.04	12.47	0.01	2.120	10.63	0.00	2.0	97.9	0.0	1.41	0.85	0.87	2.82	3.5	0.004	0.77	0.0	0.04	16.03	0.00	2.186	13.60	3.47	2.6	97.4	0.0	1.44	0.97	0.86	0.89	2.52	19740	2562	28	0	14	0	0	logfile
✔	8XoG	38528	2024-06-25	2024-01-01	2.9	3.23	3.04	3.2	0.003	0.56	0.0	0.04	14.84	0.00	2.247	3.53	0.21	2.5	97.5	0.0	0.78	0.47	0.74	3.23	3.2	0.004	0.92	0.0	0.04	16.32	0.00	2.102	7.07	1.92	2.7	97.3	0.1	0.99	0.90	0.52	0.79	2.65	8708	1115	6	0	0	2	0	logfile
✔	8XoH	38529	2024-06-25	2024-01-01	3.2	3.06	3.20	3.2	0.003	0.56	0.0	0.04	15.16	0.00	2.215	4.05	0.21	2.6	97.4	0.0	0.74	0.60	0.81	3.13	3.2	0.002	0.58	0.0	0.04	16.43	0.00	2.181	7.65	2.61	1.6	98.4	0.0	1.13	1.18	0.58	0.81	1.83	8809	1116	5	0	0	0	0	logfile
✔	8Xoi	38530	2024-06-25	2024-01-01	3.2	2.88	2.44	3.1	0.003	0.54	0.0	0.04	15.22	0.00	2.211	4.54	0.32	2.6	97.4	0.0	0.82	0.59	0.80	3.11	3.1	0.004	0.56	0.0	0.04	16.36	0.00	2.193	7.18	2.53	2.8	97.2	0.0	1.35	0.45	0.57	0.81	2.47	8753	1115	5	0	0	0	0	logfile
✔	8XoJ	38531	2024-06-25	2024-01-01	3.1	3.41	3.14	3.3	0.003	0.56	0.0	0.04	15.11	0.00	2.311	3.72	0.32	2.7	97.3	0.0	1.17	0.66	0.81	3.58	3.3	0.003	0.55	0.0	0.04	16.64	0.00	2.191	6.53	2.95	2.5	97.5	0.0	1.44	1.15	0.65	0.81	2.80	8785	1117	5	0	0	0	0	logfile
✔	8XoB	38525	2024-06-24	2023-12-31	3.15	3.40	3.18	3.4	0.005	0.80	0.0	0.04	12.87	0.01	2.358	3.44	0.00	4.2	95.8	0.0	-1.77	0.62	0.83	2.37	3.4	0.004	0.72	0.0	0.04	14.81	0.01	2.356	2.92	1.67	4.4	95.6	0.0	2.11	0.30	0.58	0.83	1.69	2858	387	1	0	0	0	0	logfile
✔	8Xo9	38523	2024-06-24	2023-12-31	3.2	3.60	3.34	3.6	0.004	0.74	0.0	0.04	14.59	0.01	2.284	5.40	0.00	2.6	97.4	0.0	1.96	0.52	0.81	2.01	3.6	0.004	0.72	0.0	0.04	15.18	0.01	2.264	5.23	2.97	3.1	96.9	0.0	2.38	0.43	0.48	0.78	1.87	2908	392	2	0	1	0	0	logfile
✔	8XoA	38524	2024-06-24	2023-12-31	3.03	3.24	3.01	3.3	0.007	1.00	1.0	0.06	11.52	0.01	2.346	6.05	0.00	1.3	98.7	0.0	0.90	0.57	0.77	2.21	3.3	0.003	0.65	0.0	0.04	13.60	0.01	2.198	5.68	1.82	2.4	97.6	0.0	1.90	0.33	0.55	0.78	2.04	2713	376	2	0	1	0	0	logfile
✔	8RKV	19284	2024-06-28	2023-12-30	3.11	3.27	3.12	3.2	0.006	0.95	0.0	0.06	22.22	0.01	2.013	5.40	1.94	6.0	94.0	0.0	-1.75	0.59	0.67	2.07	3.2	0.003	0.67	0.0	0.04	23.28	0.00	1.942	12.02	2.94	3.7	96.3	0.0	0.00	0.92	0.64	0.72	1.72	16466	1600	12	176	2	0	0	logfile
✔	8RKT	19282	2024-06-27	2023-12-30	2.35	2.45	2.50	2.5	0.006	0.96	0.0	0.07	22.00	0.01	2.046	3.02	0.00	1.9	98.1	0.0	-0.24	0.63	0.85	5.74	2.6	0.005	0.68	0.0	0.04	23.30	0.00	1.837	6.96	0.94	1.3	98.7	0.0	1.84	1.08	0.65	0.87	4.78	13794	853	14	312	3	323	0	logfile
✔	8XNG	38503	2024-06-26	2023-12-29	3.56	3.95	3.59	3.8	0.008	0.89	0.0	0.05	14.28	0.01	2.146	17.51	0.00	10.2	89.8	0.0	-1.58	0.60	0.75	1.94	3.8	0.003	0.72	0.0	0.04	16.52	0.00	2.228	12.81	2.09	6.2	93.8	0.0	0.32	1.18	0.59	0.73	1.78	10922	1366	2	0	0	0	0	logfile
✔	8XN4	38497	2024-06-29	2023-12-29	2.34	2.61	2.44	2.2	0.005	0.81	1.0	0.05	18.21	0.01	2.200	11.08	3.23	2.5	97.4	0.1	1.34	0.86	0.87	3.46	2.2	0.003	0.71	0.0	0.04	18.13	0.00	2.168	9.93	3.72	2.1	97.9	0.0	1.93	0.95	0.86	0.87	2.68	19173	2506	14	0	0	0	0	logfile
✔	8VGT	43224	2024-06-24	2023-12-27	2.9	3.22	2.90	3.2	0.011	1.30	1.0	0.07	10.51	0.01	2.374	2.03	0.70	3.9	95.6	0.5	-0.41	0.68	0.77	5.20	3.2	0.003	0.61	0.0	0.05	14.07	0.00	2.233	4.62	2.56	2.9	97.1	0.0	-0.18	1.15	0.62	0.77	4.52	4714	629	4	0	5	0	0	logfile
✔	8XLN	38454	2024-06-27	2023-12-26	3.78	3.92	3.75	3.8	0.004	0.65	0.0	0.04	17.14	0.00	2.162	7.15	0.00	6.2	93.8	0.0	0.46	0.78	0.81	1.72	3.8	0.002	0.58	0.0	0.04	16.39	0.00	2.165	7.23	2.02	6.0	94.0	0.0	0.51	1.07	0.79	0.82	1.15	6593	789	8	0	15	0	0	logfile
✔	8VFV	43190	2024-06-30	2023-12-22	3.3	3.51	3.33	3.5	0.007	1.20	1.0	0.06	13.91	0.01	1.702	2.86	0.27	2.3	97.7	0.0	1.14	0.69	0.84	3.76	3.5	0.004	0.75	0.0	0.04	13.98	0.00	1.546	10.62	2.71	3.3	96.7	0.1	0.38	0.49	0.71	0.86	3.28	21240	2607	29	0	72	0	0	logfile
✔	8XJL	38400	2024-06-25	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.003	0.53	0.0	0.04	14.80	0.00	2.174	6.91	1.05	1.7	98.3	0.0	1.83	0.59	0.68	0.80	3.27	8846	1140	6	0	1	0	0	logfile
✔	8XJM	38401	2024-06-25	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.55	0.0	0.04	14.72	0.00	2.198	7.31	2.43	1.9	98.1	0.0	2.00	1.19	0.68	0.83	4.09	8849	1140	6	0	1	0	0	logfile
✔	8XJ7	38395	2024-06-29	2023-12-20	2.74	3.10	2.92	3.0	0.005	0.73	1.0	0.04	17.62	0.00	2.027	8.63	1.55	5.1	94.6	0.3	-0.64	0.74	0.84	3.38	3.0	0.005	0.87	2.0	0.05	16.89	0.01	1.835	10.84	2.62	5.8	93.9	0.3	-0.71	0.32	0.75	0.85	3.48	19595	2420	13	6	9	0	0	logfile
✔	8XJ8	38396	2024-06-28	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.002	0.58	0.0	0.04	17.71	0.00	2.051	6.15	1.77	3.6	96.0	0.4	0.07	2.12	0.75	0.86	2.87	15904	1957	10	6	6	0	0	logfile
✔	8XJ4	38393	2024-06-24	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.69	0.0	0.04	17.63	0.01	2.278	5.47	1.26	3.8	96.2	0.0	1.68	1.19	0.69	0.79	2.39	5820	693	6	0	12	0	0	logfile

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