Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VJC	43280	2024-06-29	2024-01-06	3.8	4.21	3.77	3.9	0.003	0.65	0.0	0.05	15.46	0.00	2.157	15.56	0.51	8.2	91.6	0.2	-1.46	0.85	0.80	1.76	3.9	0.006	0.71	0.0	0.05	16.22	0.00	2.147	17.93	2.75	9.5	90.3	0.2	-1.84	0.37	0.85	0.82	1.78	13927	1726	5	0	0	0	0	logfile
✔	8VJB	43279	2024-06-29	2024-01-06	3.6	4.22	3.67	3.8	0.002	0.60	0.0	0.04	17.04	0.00	2.190	13.11	0.24	7.1	92.6	0.2	-1.46	0.88	0.83	1.85	3.8	0.003	0.61	0.0	0.04	17.28	0.00	2.132	13.67	3.15	8.1	91.7	0.2	-1.53	1.57	0.88	0.84	1.86	14688	1824	6	0	0	0	0	logfile
✔	8Vi5	43249	2024-06-25	2024-01-03	3.2	3.48	3.25	3.5	0.003	0.49	0.0	0.04	12.93	0.00	1.764	4.66	0.00	1.5	98.5	0.0	2.79	0.63	0.85	3.44	3.5	0.003	0.53	0.0	0.04	13.99	0.00	2.239	6.54	0.78	2.1	97.9	0.0	2.35	0.87	0.59	0.85	3.10	7359	924	3	0	0	0	0	logfile
✔	8Vi3	43247	2024-06-25	2024-01-03	2.9	3.36	3.11	3.3	0.002	0.44	0.0	0.04	12.32	0.00	2.186	4.59	0.00	1.2	98.8	0.0	2.50	0.69	0.87	5.29	3.3	0.004	0.50	0.0	0.04	14.79	0.00	2.218	5.53	1.31	1.5	98.5	0.0	2.39	0.32	0.61	0.89	4.82	7359	924	3	0	0	0	0	logfile
✔	8Vi4	43248	2024-06-25	2024-01-03	3.1	3.45	3.13	3.4	0.003	0.46	0.0	0.04	12.37	0.00	2.132	4.99	0.13	1.7	98.3	0.0	2.48	0.70	0.88	4.44	3.4	0.003	0.47	0.0	0.04	13.56	0.00	2.187	5.26	1.31	1.6	98.4	0.0	2.70	0.29	0.64	0.89	3.71	7359	924	3	0	0	0	0	logfile
✔	8ViB	43256	2024-06-24	2024-01-03	4.6	7.58	4.37	4.4	0.009	1.12	1.0	0.07	5.12	0.00	2.305	5.79	0.00	5.6	93.5	0.9	-0.39	0.40	0.54	—	4.4	0.003	0.72	0.0	0.04	5.08	0.00	2.217	11.42	0.00	10.9	88.4	0.7	-0.28	2.87	0.49	0.83	—	4421	888	6	0	7	0	0	logfile
✔	8Vi2	43246	2024-06-25	2024-01-03	3.1	3.54	3.18	3.5	0.003	0.48	0.0	0.04	12.42	0.00	2.029	6.59	0.00	3.7	96.3	0.0	0.67	0.62	0.86	5.04	3.5	0.003	0.53	0.0	0.04	13.63	0.00	2.202	5.71	0.52	2.3	97.7	0.0	3.43	0.64	0.56	0.85	4.31	7382	924	3	0	0	0	0	logfile
✔	8XoW	38542	2024-06-26	2024-01-02	3.32	4.19	3.43	3.9	0.004	0.78	0.0	0.04	18.34	0.01	2.094	18.47	0.98	8.5	91.0	0.5	-0.27	0.70	0.87	1.38	3.9	0.004	0.86	3.0	0.05	18.62	0.01	1.754	19.70	5.81	8.1	91.4	0.5	-0.25	0.27	0.70	0.87	1.36	62334	7962	36	0	0	0	0	logfile
✔	8XoP	38537	2024-06-30	2024-01-02	2.8	3.94	2.89	3.5	0.005	0.69	0.0	0.04	12.47	0.01	2.120	10.63	0.00	2.0	97.9	0.0	1.41	0.85	0.87	2.82	3.5	0.004	0.77	0.0	0.04	16.03	0.00	2.186	13.60	3.47	2.6	97.4	0.0	1.44	0.97	0.86	0.89	2.52	19740	2562	28	0	14	0	0	logfile
✔	8XoG	38528	2024-06-25	2024-01-01	2.9	3.23	3.04	3.2	0.003	0.56	0.0	0.04	14.84	0.00	2.247	3.53	0.21	2.5	97.5	0.0	0.78	0.47	0.74	3.23	3.2	0.004	0.92	0.0	0.04	16.32	0.00	2.102	7.07	1.92	2.7	97.3	0.1	0.99	0.90	0.52	0.79	2.65	8708	1115	6	0	0	2	0	logfile
✔	8Xoi	38530	2024-06-25	2024-01-01	3.2	2.88	2.44	3.1	0.003	0.54	0.0	0.04	15.22	0.00	2.211	4.54	0.32	2.6	97.4	0.0	0.82	0.59	0.80	3.11	3.1	0.004	0.56	0.0	0.04	16.36	0.00	2.193	7.18	2.53	2.8	97.2	0.0	1.35	0.45	0.57	0.81	2.47	8753	1115	5	0	0	0	0	logfile
✔	8XoJ	38531	2024-06-25	2024-01-01	3.1	3.41	3.14	3.3	0.003	0.56	0.0	0.04	15.11	0.00	2.311	3.72	0.32	2.7	97.3	0.0	1.17	0.66	0.81	3.58	3.3	0.003	0.55	0.0	0.04	16.64	0.00	2.191	6.53	2.95	2.5	97.5	0.0	1.44	1.15	0.65	0.81	2.80	8785	1117	5	0	0	0	0	logfile
✔	8XoH	38529	2024-06-25	2024-01-01	3.2	3.06	3.20	3.2	0.003	0.56	0.0	0.04	15.16	0.00	2.215	4.05	0.21	2.6	97.4	0.0	0.74	0.60	0.81	3.13	3.2	0.002	0.58	0.0	0.04	16.43	0.00	2.181	7.65	2.61	1.6	98.4	0.0	1.13	1.18	0.58	0.81	1.83	8809	1116	5	0	0	0	0	logfile
✔	8Xo9	38523	2024-06-24	2023-12-31	3.2	3.60	3.34	3.6	0.004	0.74	0.0	0.04	14.59	0.01	2.284	5.40	0.00	2.6	97.4	0.0	1.96	0.52	0.81	2.01	3.6	0.004	0.72	0.0	0.04	15.18	0.01	2.264	5.23	2.97	3.1	96.9	0.0	2.38	0.43	0.48	0.78	1.87	2908	392	2	0	1	0	0	logfile
✔	8XoB	38525	2024-06-24	2023-12-31	3.15	3.40	3.18	3.4	0.005	0.80	0.0	0.04	12.87	0.01	2.358	3.44	0.00	4.2	95.8	0.0	-1.77	0.62	0.83	2.37	3.4	0.004	0.72	0.0	0.04	14.81	0.01	2.356	2.92	1.67	4.4	95.6	0.0	2.11	0.30	0.58	0.83	1.69	2858	387	1	0	0	0	0	logfile
✔	8XoA	38524	2024-06-24	2023-12-31	3.03	3.24	3.01	3.3	0.007	1.00	1.0	0.06	11.52	0.01	2.346	6.05	0.00	1.3	98.7	0.0	0.90	0.57	0.77	2.21	3.3	0.003	0.65	0.0	0.04	13.60	0.01	2.198	5.68	1.82	2.4	97.6	0.0	1.90	0.33	0.55	0.78	2.04	2713	376	2	0	1	0	0	logfile
✔	8RKT	19282	2024-06-27	2023-12-30	2.35	2.45	2.50	2.5	0.006	0.96	0.0	0.07	22.00	0.01	2.046	3.02	0.00	1.9	98.1	0.0	-0.24	0.63	0.85	5.74	2.6	0.005	0.68	0.0	0.04	23.30	0.00	1.837	6.96	0.94	1.3	98.7	0.0	1.84	1.08	0.65	0.87	4.78	13794	853	14	312	3	323	0	logfile
✔	8RKV	19284	2024-06-28	2023-12-30	3.11	3.27	3.12	3.2	0.006	0.95	0.0	0.06	22.22	0.01	2.013	5.40	1.94	6.0	94.0	0.0	-1.75	0.59	0.67	2.07	3.2	0.003	0.67	0.0	0.04	23.28	0.00	1.942	12.02	2.94	3.7	96.3	0.0	0.00	0.92	0.64	0.72	1.72	16466	1600	12	176	2	0	0	logfile
✔	8XN4	38497	2024-06-29	2023-12-29	2.34	2.61	2.44	2.2	0.005	0.81	1.0	0.05	18.21	0.01	2.200	11.08	3.23	2.5	97.4	0.1	1.34	0.86	0.87	3.46	2.2	0.003	0.71	0.0	0.04	18.13	0.00	2.168	9.93	3.72	2.1	97.9	0.0	1.93	0.95	0.86	0.87	2.68	19173	2506	14	0	0	0	0	logfile
✔	8XNG	38503	2024-06-26	2023-12-29	3.56	3.95	3.59	3.8	0.008	0.89	0.0	0.05	14.28	0.01	2.146	17.51	0.00	10.2	89.8	0.0	-1.58	0.60	0.75	1.94	3.8	0.003	0.72	0.0	0.04	16.52	0.00	2.228	12.81	2.09	6.2	93.8	0.0	0.32	1.18	0.59	0.73	1.78	10922	1366	2	0	0	0	0	logfile

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