Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XW2	38728	2024-06-26	2024-01-15	3.59	3.94	3.75	3.9	0.005	0.76	0.0	0.05	13.68	0.01	2.169	11.00	0.00	5.2	94.8	0.0	0.69	0.65	0.81	2.45	3.9	0.003	0.66	0.0	0.04	15.74	0.00	2.186	8.35	1.61	4.6	95.4	0.0	1.30	0.47	0.66	0.81	1.85	10150	1268	2	0	0	0	0	logfile
✔	8XW3	38729	2024-06-26	2024-01-15	3.63	3.91	3.69	3.9	0.005	0.73	0.0	0.04	13.29	0.00	2.085	8.25	0.00	4.6	95.4	0.0	1.53	0.66	0.83	2.11	3.9	0.003	0.65	0.0	0.04	15.24	0.00	2.099	8.15	1.70	3.8	96.2	0.0	1.79	0.46	0.64	0.82	1.80	10150	1268	2	0	0	0	0	logfile
✔	8XW4	38730	2024-06-24	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.77	0.0	0.04	17.09	0.00	2.283	12.53	3.81	8.5	91.5	0.0	0.21	0.52	0.54	0.77	1.13	5027	619	1	0	0	0	0	logfile
✔	8XVY	38723	2024-06-26	2024-01-15	3.71	3.97	3.78	3.9	0.004	0.81	0.0	0.05	14.04	0.01	2.128	15.85	0.17	9.8	90.2	0.0	-0.57	0.64	0.80	1.49	3.9	0.003	0.72	0.0	0.04	16.28	0.00	2.168	13.68	2.54	8.2	91.8	0.0	0.41	0.56	0.64	0.80	1.15	10923	1361	2	0	0	0	0	logfile
✔	8XW1	38727	2024-06-24	2024-01-15	4.49	4.73	4.24	4.6	0.005	0.82	0.0	0.05	14.01	0.01	2.139	20.22	0.19	7.2	92.8	0.0	-0.07	0.59	0.82	—	4.6	0.003	0.66	0.0	0.04	13.95	0.00	2.153	13.05	0.00	5.9	94.1	0.0	1.16	1.07	0.58	0.82	—	5082	634	1	0	0	0	0	logfile
✔	8XVZ	38724	2024-06-25	2024-01-15	3.78	3.95	3.77	3.8	0.011	1.05	0.0	0.05	13.53	0.01	1.969	17.84	0.00	16.2	83.5	0.3	-2.09	0.67	0.81	2.88	3.8	0.003	0.80	0.0	0.04	15.63	0.01	2.150	12.57	2.93	12.4	87.3	0.2	-0.41	1.17	0.63	0.77	1.75	8690	1223	2	0	0	0	0	logfile
✔	8XW0	38725	2024-06-27	2024-01-15	3.11	3.37	2.97	3.4	0.005	0.91	0.0	0.05	19.55	0.01	2.126	10.61	0.83	9.7	90.3	0.0	-0.53	0.60	0.81	2.07	3.4	0.003	0.59	0.0	0.04	17.56	0.00	2.174	8.91	1.08	7.9	92.1	0.0	-0.09	1.13	0.61	0.82	1.03	11320	1392	4	0	4	0	0	logfile
✔	8XVX	38721	2024-06-26	2024-01-15	3.32	3.60	3.32	3.6	0.007	0.76	0.0	0.05	14.52	0.01	2.136	11.14	0.00	10.0	90.0	0.0	-0.50	0.66	0.81	2.26	3.5	0.003	0.61	0.0	0.04	16.39	0.01	2.177	7.86	2.66	7.9	92.1	0.0	0.60	0.36	0.63	0.81	1.36	11110	1392	2	0	0	0	0	logfile
✔	8XV2	38691	2024-06-24	2024-01-14	3.7	2.50	3.71	2.8	0.009	0.99	0.0	0.06	9.84	0.01	2.318	2.55	0.00	5.2	94.8	0.0	-3.54	0.65	0.73	3.48	2.1	0.003	0.64	0.0	0.04	15.10	0.00	2.306	11.47	1.80	4.2	95.8	0.0	1.00	1.26	0.65	0.73	2.18	3128	388	2	0	1	0	0	logfile
✔	8XV9	38693	2024-06-24	2024-01-14	3.8	2.50	3.79	2.0	0.008	0.94	0.0	0.05	12.31	0.01	2.402	2.22	0.00	5.5	94.5	0.0	-3.53	0.58	0.61	1.87	2.9	0.003	0.74	0.0	0.04	16.67	0.00	2.238	11.72	3.00	4.7	95.3	0.0	1.29	0.80	0.60	0.64	1.72	3147	388	2	0	1	0	0	logfile
✔	8XV5	38692	2024-06-24	2024-01-14	3.7	2.43	3.72	2.9	0.005	0.90	0.0	0.05	9.70	0.01	2.280	3.19	0.00	4.4	95.6	0.0	-3.67	0.68	0.71	3.33	2.1	0.011	1.40	1.0	0.05	15.38	0.01	2.236	11.49	2.70	2.9	97.1	0.0	1.20	0.65	0.69	0.72	3.08	3122	388	2	0	1	0	0	logfile
✔	8XUo	38679	2024-06-27	2024-01-13	2.84	3.39	2.97	3.3	0.004	0.83	0.0	0.30	20.56	0.00	1.970	8.77	2.71	2.8	97.1	0.1	0.14	0.64	0.71	1.90	3.3	0.003	0.69	0.0	0.04	19.01	0.00	2.121	8.65	2.35	3.4	96.6	0.0	0.05	1.43	0.65	0.74	2.01	12254	1504	4	0	4	0	0	logfile
✔	8RoZ	19408	2024-06-25	2024-01-12	2.7	2.95	2.73	3.0	0.005	0.56	0.0	0.04	17.46	0.00	1.656	5.09	1.06	1.9	98.1	0.0	1.04	0.64	0.85	2.73	3.0	0.002	0.44	0.0	0.04	17.90	0.00	2.190	4.60	2.87	1.6	98.4	0.0	1.57	0.90	0.70	0.87	2.67	6079	751	3	0	0	0	0	logfile
✔	8RNU	19395	2024-06-26	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.77	0.0	0.05	18.14	0.01	2.136	29.74	4.17	10.8	89.2	0.0	-2.45	0.71	0.64	0.32	0.56	10848	1320	12	0	0	0	0	logfile
✔	8XS0	38612	2024-06-26	2024-01-08	3.89	4.15	4.00	4.1	0.004	0.84	0.0	0.05	12.99	0.01	2.158	13.17	0.00	13.6	86.3	0.1	-0.93	0.67	0.80	2.30	4.0	0.003	0.75	0.0	0.04	15.31	0.00	2.113	10.72	3.25	11.4	88.4	0.1	-0.10	0.50	0.67	0.79	1.53	10353	1388	2	0	0	0	0	logfile
✔	8RMN	19365	2024-06-25	2024-01-08	3.8	3.72	3.66	3.7	0.004	0.71	0.0	0.04	13.55	0.01	2.133	13.63	1.16	4.4	95.6	0.0	2.54	0.63	0.77	1.15	3.7	0.003	0.63	0.0	0.04	15.56	0.00	2.162	12.90	3.39	4.7	95.3	0.0	1.85	0.94	0.63	0.75	1.24	55440	7100	40	0	0	0	0	logfile
✔	8XRY	38611	2024-06-26	2024-01-08	3.84	3.84	3.74	3.8	0.004	0.74	0.0	0.04	12.99	0.00	2.253	10.68	0.00	9.3	90.5	0.1	-0.26	0.68	0.81	2.38	3.8	0.004	0.71	0.0	0.04	15.27	0.00	2.159	9.97	2.14	7.7	92.2	0.1	0.41	0.39	0.68	0.82	1.29	10616	1392	2	0	0	0	0	logfile
✔	8XS4	38614	2024-06-26	2024-01-08	3.23	3.36	3.21	3.3	0.004	0.80	0.0	0.05	13.90	0.01	2.149	11.69	0.00	7.1	92.9	0.0	-0.41	0.68	0.79	2.51	3.3	0.003	0.70	0.0	0.04	16.10	0.00	2.202	7.70	1.19	6.5	93.5	0.0	0.65	1.56	0.68	0.82	2.17	11132	1392	2	0	0	0	0	logfile
✔	8XS3	38613	2024-06-24	2024-01-08	3.46	4.59	3.46	3.9	0.005	0.77	0.0	0.05	13.19	0.02	2.090	16.27	0.00	5.0	95.0	0.0	-3.00	0.91	0.83	2.30	3.9	0.003	0.67	0.0	0.04	14.68	0.00	2.214	15.16	3.20	4.8	95.2	0.0	-0.63	1.10	0.91	0.84	2.41	4118	535	5	0	3	0	0	logfile
✔	8XS5	38615	2024-06-25	2024-01-08	3.33	3.40	3.21	3.3	0.011	0.88	0.0	0.05	13.49	0.01	2.081	9.41	0.00	6.7	93.2	0.1	-0.34	0.70	0.85	2.61	3.4	0.002	0.60	0.0	0.04	15.13	0.00	2.262	5.51	0.44	4.7	95.2	0.1	1.52	0.41	0.68	0.84	1.74	8705	1088	2	0	0	0	0	logfile

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