Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WoS	37697	2024-06-26	2023-10-07	3.37	3.88	3.39	3.8	0.003	0.55	0.0	0.04	18.35	0.00	1.943	39.41	0.35	6.4	93.6	0.0	1.07	0.65	0.80	1.91	3.8	0.004	0.70	0.0	0.05	17.23	0.00	2.091	10.46	4.24	6.0	93.9	0.2	0.37	0.93	0.65	0.80	1.79	10672	1272	8	0	22	0	0	logfile
✔	8QRH	18614	2024-06-27	2023-10-07	3.6	3.69	3.47	3.7	0.003	0.72	0.0	0.05	12.21	0.01	2.255	2.66	0.00	3.6	96.4	0.0	-0.83	0.58	0.81	2.89	3.7	0.003	0.72	0.0	0.04	15.06	0.00	2.178	9.67	2.36	4.1	95.9	0.0	-0.18	0.73	0.60	0.82	2.34	12951	1689	9	0	3	0	0	logfile
✔	8WoM	37692	2024-06-26	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.002	0.63	0.0	0.04	13.91	0.00	2.164	5.39	1.94	7.0	93.0	0.0	-3.03	0.72	0.66	0.82	1.77	9348	1217	2	0	1	0	0	logfile
✔	8WoQ	37695	2024-06-26	2023-10-07	2.85	3.57	2.89	3.4	0.004	0.82	0.0	0.05	15.76	0.01	2.046	7.66	3.96	4.8	95.1	0.1	1.00	0.65	0.84	3.05	3.4	0.003	0.72	0.0	0.04	14.90	0.00	2.025	6.69	1.55	4.5	95.4	0.1	1.14	0.89	0.65	0.84	3.09	11218	1294	10	0	35	4	0	logfile
✔	8WoR	37696	2024-06-26	2023-10-07	2.66	3.15	2.79	3.1	0.004	0.64	0.0	0.04	15.74	0.01	1.928	22.33	5.08	3.5	96.4	0.2	1.60	0.56	0.78	2.67	3.1	0.005	0.93	1.0	0.05	15.14	0.00	1.898	7.18	3.79	4.7	95.1	0.2	0.85	0.90	0.64	0.84	3.02	11218	1294	10	0	35	4	0	logfile
✔	8WoT	37698	2024-06-26	2023-10-07	3.18	3.73	3.22	3.7	0.003	0.52	0.0	0.04	17.95	0.00	2.020	30.44	0.27	5.3	94.7	0.0	1.30	0.67	0.84	2.00	3.7	0.006	0.75	0.0	0.05	16.55	0.00	2.145	11.07	3.71	6.8	93.0	0.2	0.11	0.30	0.67	0.84	2.31	10672	1272	8	0	22	0	0	logfile
✔	8Woi	37690	2024-06-26	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.003	0.66	0.0	0.04	13.82	0.00	2.220	5.88	1.42	8.2	91.8	0.0	-2.70	0.64	0.68	0.85	2.53	9324	1217	1	0	0	0	0	logfile
✔	8WNY	37675	2024-06-25	2023-10-06	3.5	3.74	3.44	3.8	0.003	0.67	0.0	0.06	15.85	0.00	2.225	7.57	0.39	2.8	97.2	0.0	1.28	0.63	0.78	1.63	3.7	0.003	0.57	0.0	0.04	16.34	0.00	2.226	7.09	3.48	3.6	96.4	0.0	2.19	0.33	0.65	0.78	1.47	7233	924	4	0	5	0	0	logfile
✔	8UGY	42241	2024-06-25	2023-10-06	3.31	3.49	3.30	3.5	0.003	0.56	0.0	0.04	14.65	0.00	2.138	7.35	0.00	2.7	97.2	0.1	0.36	0.63	0.79	2.31	3.5	0.003	0.52	0.0	0.04	14.94	0.00	2.158	8.42	2.43	2.9	96.9	0.1	0.77	1.11	0.64	0.82	2.16	6970	864	5	0	6	1	0	logfile
✔	8WNU	37673	2024-06-28	2023-10-06	3.8	4.07	3.82	4.1	0.003	0.58	0.0	0.04	15.01	0.00	1.960	9.85	0.13	8.0	91.8	0.2	-1.09	0.69	0.63	0.95	4.1	0.005	0.97	0.0	0.05	16.83	0.00	2.053	15.60	4.23	9.4	90.4	0.2	-1.55	1.19	0.71	0.72	1.07	14152	1824	10	0	2	0	0	logfile
✔	8WNW	37674	2024-06-24	2023-10-06	3.5	3.04	3.38	3.4	0.013	1.77	2.0	0.11	13.59	0.01	2.500	4.92	2.31	1.8	98.2	0.0	2.30	0.43	0.69	2.59	3.3	0.002	0.55	0.0	0.03	15.17	0.00	2.349	8.79	1.54	1.2	98.8	0.0	1.67	0.59	0.48	0.74	2.89	1400	173	2	0	3	1	0	logfile
✔	8WNP	37670	2024-06-28	2023-10-06	3.1	3.37	3.16	3.4	0.024	1.04	0.0	0.04	14.69	0.01	1.951	6.73	0.38	7.1	92.8	0.1	-1.41	0.58	0.65	1.74	3.4	0.006	0.84	0.0	0.05	16.55	0.01	1.986	13.06	5.57	8.5	91.4	0.1	-1.66	0.82	0.61	0.70	1.82	14142	1822	10	0	2	0	0	logfile
✔	8WNT	37672	2024-06-25	2023-10-06	3.42	3.69	3.43	3.7	0.004	0.67	0.0	0.04	16.76	0.00	2.232	8.37	0.77	5.6	94.2	0.2	0.29	0.60	0.76	1.32	3.7	0.003	0.66	0.0	0.04	16.77	0.00	2.160	10.21	3.46	5.8	94.2	0.0	1.26	1.15	0.59	0.77	0.96	7309	933	5	0	5	0	0	logfile
✔	8WNS	37671	2024-06-25	2023-10-06	3.42	3.80	3.55	3.7	0.003	0.65	0.0	0.04	16.66	0.00	2.207	10.68	0.39	4.0	96.0	0.0	1.29	0.64	0.77	1.75	3.7	0.003	0.64	0.0	0.04	16.99	0.00	2.163	10.75	3.61	4.3	95.7	0.0	1.66	0.33	0.62	0.78	1.34	7226	924	3	0	4	0	0	logfile
✔	8QQU	18605	2024-06-26	2023-10-06	2.9	3.10	2.97	3.1	0.004	0.67	0.0	0.05	13.97	0.00	2.111	1.46	0.00	3.5	96.5	0.0	0.03	0.64	0.86	3.91	3.1	0.003	0.61	0.0	0.04	18.25	0.00	2.256	6.80	2.15	2.8	97.2	0.0	0.90	1.39	0.66	0.88	3.32	10715	1273	4	32	0	0	0	logfile
✔	8Wo7	37681	2024-06-25	2023-10-06	2.9	3.17	2.85	3.2	0.007	0.69	0.0	0.04	13.01	0.00	2.107	7.94	0.00	2.7	97.3	0.0	1.23	0.64	0.86	2.77	3.2	0.003	0.57	0.0	0.04	15.01	0.00	2.153	7.63	1.75	3.7	96.3	0.0	2.04	0.35	0.62	0.86	2.20	8118	1080	4	0	4	0	0	logfile
✔	8QR0	18610	2024-06-27	2023-10-06	2.5	2.61	2.54	2.6	0.014	1.67	10.0	0.09	16.28	0.02	2.361	5.64	4.26	1.1	98.9	0.0	-1.18	0.72	0.92	5.12	2.6	0.002	0.58	0.0	0.04	15.24	0.00	2.238	5.90	1.02	1.6	98.4	0.0	2.11	0.34	0.71	0.89	3.46	11598	1360	15	0	41	145	0	logfile
✔	8UH3	42245	2024-06-25	2023-10-06	3.31	3.52	3.29	3.5	0.003	0.57	0.0	0.04	14.49	0.00	2.196	10.84	0.11	2.7	97.3	0.0	0.42	0.68	0.79	2.84	3.5	0.003	0.58	0.0	0.04	15.81	0.00	2.158	11.12	2.54	2.7	97.3	0.0	0.59	2.18	0.68	0.81	2.28	8759	1098	7	0	5	1	0	logfile
✔	8WMQ	37658	2024-06-28	2023-10-04	3.3	2.84	3.57	3.5	0.004	1.07	0.0	0.04	14.04	0.01	2.060	5.60	0.00	3.3	96.7	0.0	0.89	0.62	0.80	1.20	3.5	0.004	1.01	0.0	0.04	14.58	0.01	1.949	6.15	1.28	6.4	93.6	0.0	0.82	0.99	0.63	0.84	1.48	16348	1080	6	0	6	0	8208	logfile
✔	8QQi	18592	2024-06-28	2023-10-04	2.9	3.20	2.96	3.2	0.005	0.66	0.0	0.04	13.26	0.01	2.370	1.17	0.13	4.6	95.4	0.0	-2.86	0.78	0.85	3.64	3.2	0.002	0.52	0.0	0.04	17.04	0.00	2.196	2.95	1.94	3.7	96.3	0.0	-0.18	0.63	0.74	0.84	3.08	15652	1832	10	52	4	0	0	logfile

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