Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WMC	37649	2024-06-29	2023-10-03	2.9	3.27	3.05	3.3	0.004	0.68	0.0	0.04	14.80	0.00	2.108	1.47	0.00	2.6	97.4	0.0	-0.05	0.70	0.83	3.00	3.3	0.002	0.51	0.0	0.04	16.98	0.00	2.191	4.03	1.62	2.8	97.2	0.0	0.34	0.39	0.69	0.84	2.61	16929	1983	4	38	4	0	0	logfile
✔	8WMH	37652	2024-06-27	2023-10-03	2.6	2.23	2.67	1.8	0.003	0.54	0.0	0.04	19.42	0.00	2.196	9.02	0.36	4.1	95.9	0.0	-0.02	0.60	0.62	2.31	1.8	0.004	0.62	0.0	0.04	20.35	0.00	2.176	9.96	1.63	4.7	95.3	0.0	-0.21	1.20	0.69	0.69	2.23	12942	1198	4	141	0	0	0	logfile
✔	8WML	37655	2024-06-27	2023-10-03	2.86	3.12	3.00	3.1	0.005	0.86	0.0	0.06	16.12	0.01	2.070	2.65	0.00	4.4	95.6	0.0	-1.13	0.70	0.83	3.08	3.1	0.003	0.58	0.0	0.04	17.39	0.00	2.206	4.96	1.34	3.9	96.1	0.0	-0.24	0.48	0.72	0.85	2.68	13283	1543	4	38	4	0	0	logfile
✔	8WMi	37653	2024-06-26	2023-10-03	3.53	4.01	3.72	3.9	0.003	0.66	0.0	0.04	16.40	0.00	2.226	3.76	0.00	5.3	94.7	0.0	-1.01	0.74	0.77	1.61	3.9	0.003	0.58	0.0	0.04	17.53	0.00	2.184	8.47	1.31	6.3	93.7	0.0	-0.53	0.44	0.76	0.79	2.09	10763	1237	3	39	4	0	0	logfile
✔	8WM8	37645	2024-06-28	2023-10-03	3.54	3.92	3.62	3.9	0.002	0.58	0.0	0.04	14.85	0.00	1.963	8.64	0.00	7.3	92.7	0.0	-2.51	0.59	0.76	1.77	3.9	0.003	0.59	0.0	0.04	16.06	0.00	1.898	9.84	0.89	7.7	92.2	0.1	-2.05	0.37	0.56	0.74	1.67	16776	1055	5	0	1	0	8522	logfile
✔	8UF7	42185	2024-06-24	2023-10-03	3.2	2.40	3.23	2.0	0.005	0.70	0.0	0.05	18.21	0.01	2.204	18.82	0.89	12.8	86.6	0.6	-2.23	0.68	0.67	1.77	2.1	0.005	0.72	0.0	0.04	18.48	0.01	2.183	20.12	8.05	13.6	85.8	0.6	-2.20	1.11	0.68	0.67	1.40	3927	514	3	0	0	0	0	logfile
✔	8WM4	37640	2024-06-27	2023-10-02	2.93	3.34	3.10	3.3	0.004	0.87	0.0	0.05	17.05	0.01	2.291	4.80	0.78	5.9	94.1	0.0	-2.05	0.71	0.73	1.32	3.3	0.002	0.58	0.0	0.04	17.75	0.00	2.143	8.88	2.43	5.3	94.7	0.0	-0.46	0.48	0.71	0.73	1.27	11530	1331	3	38	4	0	0	logfile
✔	8QPE	18548	2024-06-24	2023-10-01	3.1	3.23	3.01	3.0	0.002	0.47	0.0	0.11	15.70	0.00	2.202	8.57	0.00	1.9	98.1	0.0	1.39	0.69	0.83	2.26	2.9	0.002	0.48	0.0	0.04	16.32	0.00	2.124	9.33	0.82	2.0	98.0	0.0	1.30	1.37	0.70	0.86	2.22	54566	6251	21	236	1	0	0	logfile
✔	8QPF	18549	2024-06-26	2023-10-01	2.53	3.55	2.56	3.3	0.005	0.84	0.0	0.05	14.75	0.01	2.257	3.31	0.75	2.3	97.5	0.3	-0.50	0.78	0.84	3.52	3.3	0.003	0.58	0.0	0.04	15.47	0.00	2.207	9.26	2.02	2.8	97.0	0.3	2.94	1.02	0.65	0.84	3.27	9085	1167	6	0	0	202	0	logfile
✔	8WLK	37622	2024-06-24	2023-09-30	3.37	3.55	3.44	3.6	0.006	0.91	0.0	0.05	15.66	0.01	2.227	9.42	0.00	2.6	97.4	0.0	-0.01	0.44	0.72	1.86	3.6	0.004	0.73	0.0	0.04	17.26	0.01	2.214	12.34	4.65	1.8	98.2	0.0	0.79	0.45	0.44	0.74	1.94	2873	383	2	0	1	0	0	logfile
✔	8WLR	37629	2024-06-25	2023-09-30	3.12	3.43	3.11	3.3	0.003	0.53	0.0	0.04	16.12	0.00	2.266	4.86	0.14	1.9	98.1	0.0	0.16	0.70	0.88	3.10	3.3	0.003	0.51	0.0	0.04	16.13	0.00	2.279	3.59	2.02	2.0	98.0	0.0	0.92	0.35	0.73	0.90	2.88	6431	792	4	0	2	0	0	logfile
✔	8WLM	37624	2024-06-24	2023-09-30	3.57	3.69	3.72	3.8	0.004	0.80	0.0	0.05	14.40	0.00	2.198	10.34	0.00	3.4	96.6	0.0	0.52	0.43	0.74	1.11	3.7	0.003	0.72	0.0	0.04	16.74	0.00	2.135	12.62	2.38	3.7	96.3	0.0	1.13	0.47	0.44	0.74	1.34	2804	382	2	0	1	0	0	logfile
✔	8WLL	37623	2024-06-24	2023-09-30	3.74	3.82	3.77	3.9	0.024	1.06	0.0	0.10	13.07	0.01	2.238	10.14	0.00	2.9	97.1	0.0	0.58	0.50	0.76	1.39	3.8	0.004	0.98	0.0	0.05	15.85	0.00	2.209	14.77	3.24	4.2	95.8	0.0	0.25	0.50	0.49	0.77	0.00	2815	389	2	0	1	0	0	logfile
✔	8WLJ	37621	2024-06-24	2023-09-30	3.6	3.72	3.64	3.7	0.005	0.82	1.0	0.05	14.05	0.01	2.283	8.82	0.00	2.5	97.5	0.0	0.69	0.50	0.75	2.07	3.7	0.003	0.72	0.0	0.04	16.72	0.00	2.249	10.41	3.94	2.9	97.1	0.0	1.34	1.06	0.49	0.74	1.77	4035	530	2	0	0	0	0	logfile
✔	8QoT	18541	2024-06-25	2023-09-29	3.2	2.66	3.11	2.2	0.004	0.62	0.0	0.04	12.78	0.00	2.219	6.66	0.00	3.7	96.3	0.0	0.08	0.79	0.77	3.11	3.0	0.003	0.65	0.0	0.04	15.09	0.00	2.217	8.88	2.30	3.8	96.2	0.0	0.91	1.15	0.79	0.81	2.98	7493	968	5	0	0	0	0	logfile
✔	8WKN	37603	2024-06-30	2023-09-28	3.4	3.81	3.44	3.6	0.014	0.67	0.0	0.04	16.08	0.01	2.214	6.49	0.30	4.5	95.4	0.1	0.67	0.88	0.89	1.92	3.6	0.002	0.51	0.0	0.04	16.43	0.00	2.180	5.88	1.52	4.0	95.9	0.0	1.22	0.33	0.88	0.89	1.73	21526	2607	5	0	0	0	0	logfile
✔	8WKX	37610	2024-06-28	2023-09-28	4.15	4.52	4.17	4.2	0.003	0.58	0.0	0.04	14.27	0.00	1.594	11.38	0.05	4.7	95.3	0.0	-0.59	0.83	0.80	—	4.2	0.002	0.58	0.0	0.04	14.46	0.00	2.171	10.61	0.00	4.7	95.3	0.0	-0.10	0.49	0.83	0.80	—	16555	1988	2	0	0	0	0	logfile
✔	8UD4	42146	2024-06-29	2023-09-28	3.25	3.46	3.27	3.5	0.003	0.56	0.0	0.05	17.65	0.00	2.204	7.62	0.43	1.6	98.4	0.0	0.49	0.69	0.80	3.51	3.5	0.003	0.54	0.0	0.04	17.42	0.00	2.208	6.70	1.29	2.2	97.8	0.0	0.58	0.99	0.71	0.84	3.40	17498	2076	8	46	0	0	0	logfile
✔	8UDG	42149	2024-06-29	2023-09-28	4.98	6.27	5.10	5.0	0.004	0.65	0.0	0.04	11.43	0.00	2.089	3.07	0.00	2.8	97.1	0.2	-0.18	0.86	0.74	—	5.0	0.003	0.54	0.0	0.04	11.75	0.00	1.953	12.44	0.00	4.9	94.9	0.2	0.67	1.04	0.87	0.76	—	19524	1317	7	0	0	0	9627	logfile
✔	8UDL	42150	2024-06-28	2023-09-28	2.37	1.99	2.45	1.7	0.003	0.74	0.0	0.05	15.49	0.01	2.257	2.17	0.39	3.8	96.1	0.1	-0.77	0.66	0.76	3.31	1.7	0.003	0.73	0.0	0.04	19.08	0.01	2.195	7.06	2.32	4.0	96.0	0.1	0.44	2.69	0.67	0.77	2.17	15245	1783	5	46	0	0	0	logfile

• ← previous
• Page 23 of 440
• next →