Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EWQ	50022	2024-06-27	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.83	1.0	0.05	15.11	0.00	2.141	6.08	2.11	3.8	96.2	0.0	-1.07	0.24	0.77	0.88	3.27	11904	1540	4	0	0	0	0	logfile
✔	9B8X	44361	2024-06-25	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.50	0.0	0.04	12.12	0.00	2.297	5.20	1.08	2.8	97.2	0.0	2.48	0.97	0.61	0.88	2.91	7564	993	2	0	2	0	0	logfile
✔	9B8Z	44363	2024-06-25	2024-04-01	3.4	4.06	3.36	3.8	0.004	0.48	0.0	0.03	10.45	0.00	2.014	3.84	0.54	4.2	95.8	0.0	2.44	0.70	0.85	2.22	3.8	0.004	0.92	1.0	0.04	14.23	0.00	2.242	7.41	2.16	3.1	96.7	0.2	1.91	0.53	0.69	0.87	1.81	7509	978	2	0	3	0	0	logfile
✔	9B91	44365	2024-06-25	2024-04-01	3.3	4.21	3.19	3.7	0.005	0.50	0.0	0.04	11.38	0.00	2.119	6.47	0.28	3.9	96.1	0.0	1.45	0.60	0.83	2.44	3.8	0.002	0.60	0.0	0.04	13.60	0.00	2.248	8.36	2.48	2.8	97.2	0.0	2.24	0.59	0.59	0.85	2.07	7511	993	2	0	3	0	0	logfile
✔	8YUU	39583	2024-06-26	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.003	0.53	0.0	0.04	14.27	0.00	2.130	5.24	1.64	2.2	97.7	0.1	1.70	0.54	0.65	0.83	3.27	9037	1145	6	0	2	0	0	logfile
✔	9ERN	19927	2024-06-24	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.004	0.64	0.0	0.05	16.29	0.00	2.111	2.99	0.76	0.9	99.1	0.0	-1.61	0.98	0.43	0.91	5.80	3444	450	6	0	0	0	0	logfile
✔	9ERM	19926	2024-06-24	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.003	0.63	0.0	0.05	16.25	0.00	2.361	3.76	1.82	2.5	97.5	0.0	-1.25	0.99	0.43	0.93	6.49	2870	375	5	0	0	0	0	logfile
✔	9ERo	19928	2024-06-24	2024-03-24	2.9	3.15	2.93	3.1	0.010	1.67	0.0	0.09	13.22	0.01	2.427	3.65	5.26	5.5	94.5	0.0	-4.12	0.48	0.85	4.87	3.1	0.006	0.85	0.0	0.05	14.93	0.00	2.196	8.57	2.41	4.1	95.9	0.0	-1.72	2.51	0.44	0.83	5.43	5775	750	10	0	0	0	0	logfile
✔	8YR4	39535	2024-06-26	2024-03-20	3.1	4.30	3.38	3.8	0.004	0.65	0.0	0.04	16.81	0.00	1.330	8.96	0.70	5.1	94.9	0.0	0.34	0.67	0.83	1.56	3.8	0.004	0.65	0.0	0.04	17.73	0.00	2.178	11.31	3.32	3.6	96.4	0.0	1.46	0.97	0.69	0.86	1.29	9323	1180	8	0	3	0	0	logfile
✔	8YR3	39534	2024-06-26	2024-03-20	3.2	4.44	3.46	4.0	0.008	1.03	2.0	0.05	17.69	0.01	2.232	15.64	1.31	6.7	93.2	0.2	0.25	0.72	0.85	1.15	4.0	0.004	0.66	0.0	0.04	17.85	0.00	2.153	12.65	2.53	4.3	95.7	0.0	1.51	2.73	0.72	0.86	1.07	9319	1174	4	0	3	0	0	logfile
✔	9B3P	44148	2024-06-26	2024-03-19	3.0	2.71	3.02	3.0	0.002	0.37	0.0	0.03	24.09	0.00	2.292	3.54	0.16	4.6	94.9	0.6	-5.86	0.70	0.70	1.67	3.0	0.003	0.55	0.0	0.03	27.34	0.00	2.186	7.04	1.48	2.5	97.4	0.1	1.88	0.99	0.80	0.85	3.61	11067	738	10	256	0	0	0	logfile
✔	9B33	44124	2024-06-24	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	0.98	0.0	0.05	12.49	0.01	2.050	23.99	0.00	21.1	78.1	0.9	-4.68	1.21	0.68	0.69	—	3619	474	4	0	4	0	0	logfile
✔	9B35	44128	2024-06-28	2024-03-18	3.4	3.76	3.53	3.7	0.008	1.24	0.0	0.06	10.75	0.01	2.244	5.09	0.65	11.7	87.4	0.9	-5.51	0.68	0.81	3.08	3.7	0.003	0.73	0.0	0.04	14.33	0.00	2.130	12.55	1.94	10.8	89.1	0.1	-1.05	0.81	0.67	0.82	2.14	14132	1780	8	0	0	0	0	logfile
✔	9B34	44125	2024-06-24	2024-03-18	3.58	3.87	3.58	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.004	1.01	0.0	0.05	16.44	0.01	2.048	20.06	2.72	24.0	75.3	0.6	-4.39	2.02	0.71	0.73	0.86	3619	474	4	0	4	0	0	logfile
✔	9EoH	19855	2024-06-24	2024-03-14	2.8	3.08	2.71	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.004	0.82	0.0	0.05	17.08	0.00	2.339	8.04	2.05	3.5	96.5	0.0	-2.62	1.19	0.42	0.88	5.54	3414	444	6	0	0	0	0	logfile
✔	9EoG	19854	2024-06-24	2024-03-14	3.0	3.00	2.79	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.004	0.76	0.0	0.05	15.29	0.00	2.140	9.36	1.49	5.3	94.7	0.0	-1.63	1.09	0.36	0.88	3.18	3522	462	6	0	0	0	0	logfile
✔	9ENQ	19838	2024-06-24	2024-03-13	2.12	2.27	2.15	2.2	0.012	1.40	0.0	0.09	13.43	0.03	2.294	1.41	0.17	1.1	98.9	0.0	-0.45	0.64	0.79	5.90	2.2	0.003	0.82	0.0	0.04	14.83	0.00	2.280	3.52	0.84	0.9	99.1	0.0	0.98	0.35	0.74	0.82	5.53	5743	707	5	4	4	7	0	logfile
✔	9ENP	19837	2024-06-27	2024-03-13	2.12	1.73	—	1.4	0.011	1.43	0.0	0.08	15.61	0.02	1.333	2.51	0.36	2.0	98.0	0.0	-0.53	0.79	0.76	4.58	1.4	0.004	0.73	0.0	0.04	17.71	0.00	1.427	5.25	1.80	1.5	98.5	0.0	0.56	1.28	0.86	0.85	4.39	11552	1338	6	48	4	7	0	logfile
✔	9EMC	19817	2024-06-28	2024-03-11	3.26	3.86	3.07	3.6	0.011	1.34	0.0	0.08	18.59	0.01	2.075	5.04	1.44	2.5	97.5	0.0	-3.73	0.75	0.68	0.35	3.6	0.003	0.56	0.0	0.04	17.73	0.00	1.927	7.53	2.29	2.5	97.5	0.0	1.51	1.16	0.82	0.90	2.04	15489	1977	12	0	12	0	0	logfile
✔	9AYF	43990	2024-06-29	2024-03-07	3.6	2.18	—	2.0	0.004	0.67	0.0	0.05	14.71	0.01	2.191	5.85	0.00	2.5	97.5	0.0	0.19	0.79	0.77	2.69	1.9	0.003	0.54	0.0	0.04	15.38	0.00	2.168	6.08	2.66	3.2	96.8	0.0	0.40	0.32	0.80	0.78	2.96	19630	2441	14	0	27	0	0	logfile

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