Table showing results for June 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9AYG	43991	2024-06-25	2024-03-07	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8822	1055	2	0	12	0	0	logfile
✔	9AYF	43990	2024-06-29	2024-03-07	3.6	2.18	—	2.0	0.004	0.67	0.0	0.05	14.71	0.01	2.191	5.85	0.00	2.5	97.5	0.0	0.19	0.79	0.77	2.69	1.9	0.003	0.54	0.0	0.04	15.38	0.00	2.168	6.08	2.66	3.2	96.8	0.0	0.40	0.32	0.80	0.78	2.96	19630	2441	14	0	27	0	0	logfile
✔	9AXF	43966	2024-06-30	2024-03-06	3.5	2.15	—	2.9	0.005	0.78	0.0	0.06	13.15	0.00	2.162	5.78	0.00	2.4	97.6	0.0	0.13	0.80	0.80	4.05	2.9	0.005	0.58	0.0	0.04	14.19	0.00	2.126	5.38	2.45	3.3	96.7	0.0	0.58	0.33	0.81	0.80	3.70	21342	2607	15	0	40	0	0	logfile
✔	8S86	19798	2024-06-25	2024-03-05	2.8	3.06	2.71	3.0	0.008	1.18	2.0	0.07	13.44	0.01	2.292	8.93	2.24	6.7	93.3	0.0	-2.43	0.56	0.62	3.43	3.0	0.004	0.73	0.0	0.05	15.86	0.00	2.149	19.41	3.29	3.3	96.7	0.0	-0.31	1.20	0.61	0.66	2.36	6177	785	2	0	0	0	0	logfile
✔	8YKX	39375	2024-06-25	2024-03-05	2.69	3.09	2.85	3.0	0.004	0.61	0.0	0.04	14.75	0.00	2.222	4.28	0.43	2.9	97.1	0.0	1.26	0.58	0.82	4.43	3.0	0.004	0.59	0.0	0.04	15.51	0.00	2.144	6.13	1.72	2.3	97.7	0.0	1.47	0.41	0.61	0.85	3.93	8710	1121	6	0	1	0	0	logfile
✔	8YKW	39374	2024-06-25	2024-03-05	2.75	3.17	2.86	3.1	0.004	0.65	0.0	0.04	14.75	0.00	2.239	3.36	0.54	2.9	97.1	0.0	1.10	0.65	0.86	3.50	3.1	0.002	0.55	0.0	0.04	16.02	0.00	2.235	6.31	1.83	2.5	97.5	0.0	1.55	0.94	0.62	0.85	2.62	8718	1124	6	0	1	0	0	logfile
✔	8YJY	39353	2024-06-24	2024-03-03	3.3	3.57	3.37	3.6	0.004	0.74	0.0	0.04	17.28	0.01	2.175	9.73	0.22	3.8	96.2	0.0	1.48	0.66	0.74	2.15	3.6	0.003	0.65	0.0	0.04	17.77	0.00	2.231	8.66	4.18	4.0	96.0	0.0	1.64	0.84	0.66	0.74	1.71	4254	530	2	0	0	0	0	logfile
✔	9AUC	43877	2024-06-26	2024-02-28	2.4	2.09	2.10	2.6	0.003	0.48	3.0	0.04	13.24	0.00	2.239	4.66	0.91	0.9	99.1	0.0	-3.20	0.64	0.80	3.68	2.5	0.004	0.61	0.0	0.04	16.42	0.00	2.198	6.46	1.65	2.5	97.5	0.0	0.93	0.66	0.64	0.83	3.76	10369	1275	11	0	10	16	0	logfile
✔	8YF0	39206	2024-06-26	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.67	0.0	0.04	16.87	0.00	2.195	14.24	2.37	3.0	97.0	0.0	1.01	0.47	0.53	0.65	0.48	9181	1159	2	0	0	0	0	logfile
✔	8S5K	19738	2024-06-26	2024-02-23	3.8	3.96	3.75	3.9	0.004	0.75	0.0	0.04	14.70	0.01	1.967	7.13	0.15	3.0	96.8	0.1	0.58	0.76	0.72	1.58	3.8	0.007	0.68	0.0	0.04	15.24	0.00	1.939	12.72	1.49	6.1	93.9	0.0	-0.08	1.02	0.79	0.79	1.33	63696	4056	16	0	8	0	31792	logfile
✔	8YF1	39207	2024-06-26	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.8	0.005	0.65	0.0	0.04	16.63	0.00	2.053	12.76	2.38	3.7	96.3	0.0	0.59	0.31	0.43	0.64	0.99	9187	1156	4	0	2	0	0	logfile
✔	8S5H	19735	2024-06-26	2024-02-23	3.7	4.00	3.77	3.8	0.004	0.66	0.0	0.04	14.76	0.01	2.035	6.20	0.00	1.6	98.2	0.2	0.92	0.74	0.74	0.97	3.8	0.005	0.69	0.0	0.04	15.21	0.00	1.936	10.55	1.75	3.5	96.4	0.1	0.59	1.26	0.76	0.79	0.97	63696	4056	16	0	8	0	31792	logfile
✔	8W22	43737	2024-06-24	2024-02-19	4.0	4.25	3.95	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.2	0.002	0.65	0.0	0.04	12.29	0.00	2.313	4.27	2.78	2.3	97.7	0.0	0.32	0.76	0.73	0.78	—	3750	629	3	0	0	0	0	logfile
✔	8S32	19687	2024-06-25	2024-02-19	2.45	2.64	2.69	2.8	0.004	0.60	0.0	0.04	16.86	0.00	2.225	7.68	1.61	2.6	97.2	0.2	1.91	0.62	0.81	2.58	2.8	0.004	0.61	0.0	0.04	18.31	0.00	2.225	8.92	4.26	3.3	96.5	0.2	1.23	0.62	0.67	0.86	2.57	55552	7518	28	0	0	0	0	logfile
✔	8W20	43736	2024-06-28	2024-02-19	4.3	4.55	4.30	4.4	0.008	1.34	2.0	0.06	6.79	0.01	2.278	1.60	0.45	2.6	97.2	0.3	1.23	0.68	0.69	—	4.5	0.008	0.88	0.0	0.05	8.66	0.01	2.143	6.84	0.00	6.7	93.3	0.0	0.24	1.85	0.70	0.73	—	15412	2814	11	0	0	0	0	logfile
✔	8YC0	39128	2024-06-24	2024-02-17	4.12	4.24	3.86	4.2	0.004	0.77	0.0	0.04	17.51	0.00	2.114	14.18	0.58	7.6	92.4	0.0	-0.95	0.50	0.65	—	4.2	0.003	0.71	0.0	0.04	13.86	0.00	2.174	12.89	0.00	7.4	92.6	0.0	-0.62	1.31	0.60	0.72	—	4635	583	9	0	1	0	0	logfile
✔	8W15	43715	2024-06-30	2024-02-15	2.72	3.63	3.61	3.3	0.003	0.57	1.0	0.04	16.09	0.00	2.133	6.71	1.36	2.9	97.1	0.0	0.92	0.87	0.89	2.90	3.3	0.002	0.59	0.0	0.04	16.52	0.00	2.191	8.00	1.95	2.8	97.2	0.0	2.28	0.89	0.86	0.87	2.09	21207	2710	2	0	0	0	0	logfile
✔	8YBE	39117	2024-06-24	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.004	0.63	0.0	0.04	16.54	0.00	2.202	12.22	2.01	2.4	97.6	0.0	1.42	0.30	0.67	0.83	5.63	3110	370	3	0	2	197	0	logfile
✔	8RZL	19608	2024-06-25	2024-02-12	2.65	3.69	2.75	3.2	0.012	1.57	0.0	0.10	15.37	0.01	1.332	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.64	0.0	0.04	11.31	0.00	2.247	4.33	2.05	2.1	97.9	0.0	1.65	0.96	0.87	0.90	5.30	8895	915	35	0	155	0	0	logfile
✔	8VZo	43684	2024-06-24	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.003	0.57	0.0	0.04	15.18	0.00	2.240	6.25	2.12	2.0	98.0	0.0	1.58	0.50	0.67	0.88	4.22	4796	615	4	0	1	0	0	logfile

• ← previous
• Page 4 of 496
• next →